data_1RK8 # _model_server_result.job_id Mk7PziLR64I2TeFaMLHv0Q _model_server_result.datetime_utc '2025-02-05 18:07:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rk8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":9003}' # _entry.id 1RK8 # _exptl.entry_id 1RK8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RK8 _cell.length_a 106.357 _cell.length_b 106.357 _cell.length_c 58.139 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RK8 _symmetry.cell_setting tetragonal _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 87 A ASP 87 1_555 E CA CA . A CA 9002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc2 A OD2 ASP 87 A ASP 87 1_555 F CA CA . A CA 9003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc3 A OD1 ASP 87 A ASP 87 1_555 F CA CA . A CA 9003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? metalc ? metalc4 A OE1 GLU 88 A GLU 88 1_555 F CA CA . A CA 9003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc5 A OE2 GLU 88 A GLU 88 1_555 F CA CA . A CA 9003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc6 A OE1 GLU 91 A GLU 91 1_555 E CA CA . A CA 9002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.869 ? metalc ? metalc7 A OE2 GLU 91 A GLU 91 1_555 E CA CA . A CA 9002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc8 A OE2 GLU 138 A GLU 138 1_555 D CA CA . A CA 9001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc9 A OE1 GLN 145 A GLN 145 3_644 F CA CA . A CA 9003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc10 A OD1 ASP 147 A ASP 147 3_644 E CA CA . A CA 9002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc11 D CA CA . A CA 9001 1_555 G O HOH . A HOH 9027 4_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc12 D CA CA . A CA 9001 1_555 G O HOH . A HOH 9028 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc13 D CA CA . A CA 9001 1_555 G O HOH . A HOH 9029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.811 ? metalc ? metalc14 D CA CA . A CA 9001 1_555 G O HOH . A HOH 9071 4_565 ? ? ? ? ? ? ? ? ? ? ? ? 3.067 ? metalc ? metalc15 D CA CA . A CA 9001 1_555 C O SER 8 C SER 8 2_765 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc16 E CA CA . A CA 9002 1_555 G O HOH . A HOH 9018 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.802 ? metalc ? metalc17 E CA CA . A CA 9002 1_555 G O HOH . A HOH 9019 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? metalc ? metalc18 E CA CA . A CA 9002 1_555 G O HOH . A HOH 9020 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? metalc ? metalc19 F CA CA . A CA 9003 1_555 G O HOH . A HOH 9017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? metalc ? metalc20 F CA CA . A CA 9003 1_555 G O HOH . A HOH 9018 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? metalc ? metalc21 F CA CA . A CA 9003 1_555 G O HOH . A HOH 9077 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1RK8 _atom_sites.fract_transf_matrix[1][1] 0.009402 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009402 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0172 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA A 1 9001 9001 CA CA . E 4 CA A 1 9002 9002 CA CA . F 4 CA A 1 9003 9003 CA CA . G 5 HOH A 1 9004 2 HOH HOH . G 5 HOH A 2 9005 3 HOH HOH . G 5 HOH A 3 9006 4 HOH HOH . G 5 HOH A 4 9007 5 HOH HOH . G 5 HOH A 5 9008 7 HOH HOH . G 5 HOH A 6 9009 8 HOH HOH . G 5 HOH A 7 9010 9 HOH HOH . G 5 HOH A 8 9011 10 HOH HOH . G 5 HOH A 9 9012 11 HOH HOH . G 5 HOH A 10 9013 12 HOH HOH . G 5 HOH A 11 9014 18 HOH HOH . G 5 HOH A 12 9015 19 HOH HOH . G 5 HOH A 13 9016 20 HOH HOH . G 5 HOH A 14 9017 21 HOH HOH . G 5 HOH A 15 9018 22 HOH HOH . G 5 HOH A 16 9019 23 HOH HOH . G 5 HOH A 17 9020 24 HOH HOH . G 5 HOH A 18 9021 26 HOH HOH . G 5 HOH A 19 9022 27 HOH HOH . G 5 HOH A 20 9023 28 HOH HOH . G 5 HOH A 21 9024 30 HOH HOH . G 5 HOH A 22 9025 31 HOH HOH . G 5 HOH A 23 9026 33 HOH HOH . G 5 HOH A 24 9027 35 HOH HOH . G 5 HOH A 25 9028 36 HOH HOH . G 5 HOH A 26 9029 37 HOH HOH . G 5 HOH A 27 9030 38 HOH HOH . G 5 HOH A 28 9031 39 HOH HOH . G 5 HOH A 29 9032 40 HOH HOH . G 5 HOH A 30 9033 50 HOH HOH . G 5 HOH A 31 9034 51 HOH HOH . G 5 HOH A 32 9035 53 HOH HOH . G 5 HOH A 33 9036 54 HOH HOH . G 5 HOH A 34 9037 55 HOH HOH . G 5 HOH A 35 9038 56 HOH HOH . G 5 HOH A 36 9039 57 HOH HOH . G 5 HOH A 37 9040 58 HOH HOH . G 5 HOH A 38 9041 59 HOH HOH . G 5 HOH A 39 9042 60 HOH HOH . G 5 HOH A 40 9043 61 HOH HOH . G 5 HOH A 41 9044 63 HOH HOH . G 5 HOH A 42 9045 64 HOH HOH . G 5 HOH A 43 9046 65 HOH HOH . G 5 HOH A 44 9047 66 HOH HOH . G 5 HOH A 45 9048 68 HOH HOH . G 5 HOH A 46 9049 69 HOH HOH . G 5 HOH A 47 9050 71 HOH HOH . G 5 HOH A 48 9051 72 HOH HOH . G 5 HOH A 49 9052 74 HOH HOH . G 5 HOH A 50 9053 83 HOH HOH . G 5 HOH A 51 9054 91 HOH HOH . G 5 HOH A 52 9055 92 HOH HOH . G 5 HOH A 53 9056 93 HOH HOH . G 5 HOH A 54 9057 94 HOH HOH . G 5 HOH A 55 9058 95 HOH HOH . G 5 HOH A 56 9059 96 HOH HOH . G 5 HOH A 57 9060 97 HOH HOH . G 5 HOH A 58 9061 98 HOH HOH . G 5 HOH A 59 9062 99 HOH HOH . G 5 HOH A 60 9063 100 HOH HOH . G 5 HOH A 61 9064 101 HOH HOH . G 5 HOH A 62 9065 103 HOH HOH . G 5 HOH A 63 9066 104 HOH HOH . G 5 HOH A 64 9067 105 HOH HOH . G 5 HOH A 65 9068 110 HOH HOH . G 5 HOH A 66 9069 114 HOH HOH . G 5 HOH A 67 9070 115 HOH HOH . G 5 HOH A 68 9071 120 HOH HOH . G 5 HOH A 69 9072 121 HOH HOH . G 5 HOH A 70 9073 126 HOH HOH . G 5 HOH A 71 9074 127 HOH HOH . G 5 HOH A 72 9075 129 HOH HOH . G 5 HOH A 73 9076 130 HOH HOH . G 5 HOH A 74 9077 131 HOH HOH . G 5 HOH A 75 9078 136 HOH HOH . G 5 HOH A 76 9079 137 HOH HOH . G 5 HOH A 77 9080 139 HOH HOH . G 5 HOH A 78 9081 141 HOH HOH . H 5 HOH B 1 148 6 HOH HOH . H 5 HOH B 2 149 13 HOH HOH . H 5 HOH B 3 150 14 HOH HOH . H 5 HOH B 4 151 15 HOH HOH . H 5 HOH B 5 152 16 HOH HOH . H 5 HOH B 6 153 17 HOH HOH . H 5 HOH B 7 154 25 HOH HOH . H 5 HOH B 8 155 29 HOH HOH . H 5 HOH B 9 156 32 HOH HOH . H 5 HOH B 10 157 34 HOH HOH . H 5 HOH B 11 158 41 HOH HOH . H 5 HOH B 12 159 45 HOH HOH . H 5 HOH B 13 160 46 HOH HOH . H 5 HOH B 14 161 47 HOH HOH . H 5 HOH B 15 162 48 HOH HOH . H 5 HOH B 16 163 49 HOH HOH . H 5 HOH B 17 164 52 HOH HOH . H 5 HOH B 18 165 73 HOH HOH . H 5 HOH B 19 166 75 HOH HOH . H 5 HOH B 20 167 76 HOH HOH . H 5 HOH B 21 168 77 HOH HOH . H 5 HOH B 22 169 78 HOH HOH . H 5 HOH B 23 170 79 HOH HOH . H 5 HOH B 24 171 80 HOH HOH . H 5 HOH B 25 172 81 HOH HOH . H 5 HOH B 26 173 82 HOH HOH . H 5 HOH B 27 174 84 HOH HOH . H 5 HOH B 28 175 87 HOH HOH . H 5 HOH B 29 176 88 HOH HOH . H 5 HOH B 30 177 89 HOH HOH . H 5 HOH B 31 178 90 HOH HOH . H 5 HOH B 32 179 106 HOH HOH . H 5 HOH B 33 180 107 HOH HOH . H 5 HOH B 34 181 108 HOH HOH . H 5 HOH B 35 182 109 HOH HOH . H 5 HOH B 36 183 112 HOH HOH . H 5 HOH B 37 184 113 HOH HOH . H 5 HOH B 38 185 117 HOH HOH . H 5 HOH B 39 186 119 HOH HOH . H 5 HOH B 40 187 122 HOH HOH . H 5 HOH B 41 188 123 HOH HOH . H 5 HOH B 42 189 124 HOH HOH . H 5 HOH B 43 190 125 HOH HOH . H 5 HOH B 44 191 128 HOH HOH . H 5 HOH B 45 192 132 HOH HOH . H 5 HOH B 46 193 133 HOH HOH . H 5 HOH B 47 194 134 HOH HOH . H 5 HOH B 48 195 135 HOH HOH . H 5 HOH B 49 196 140 HOH HOH . H 5 HOH B 50 197 142 HOH HOH . I 5 HOH C 1 59 1 HOH HOH . I 5 HOH C 2 60 42 HOH HOH . I 5 HOH C 3 61 43 HOH HOH . I 5 HOH C 4 62 44 HOH HOH . I 5 HOH C 5 63 62 HOH HOH . I 5 HOH C 6 64 67 HOH HOH . I 5 HOH C 7 65 70 HOH HOH . I 5 HOH C 8 66 85 HOH HOH . I 5 HOH C 9 67 86 HOH HOH . I 5 HOH C 10 68 102 HOH HOH . I 5 HOH C 11 69 111 HOH HOH . I 5 HOH C 12 70 116 HOH HOH . I 5 HOH C 13 71 118 HOH HOH . I 5 HOH C 14 72 138 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x 97.795 _atom_site.Cartn_y 42.568 _atom_site.Cartn_z 19.161 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 17.46 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 9003 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #