data_1RKP # _model_server_result.job_id cb95CPLhThV-yHht-g0oNQ _model_server_result.datetime_utc '2024-11-05 21:07:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rkp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 1RKP # _exptl.entry_id 1RKP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 222.244 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-ISOBUTYL-1-METHYLXANTHINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1RKP _cell.length_a 74.456 _cell.length_b 74.456 _cell.length_c 130.132 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RKP _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E O HOH . A HOH 1 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc2 E O HOH . A HOH 2 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc3 E O HOH . A HOH 2 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc4 E O HOH . A HOH 3 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc5 E O HOH . A HOH 4 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc6 E O HOH . A HOH 5 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc7 E O HOH . A HOH 6 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc8 B ZN ZN . A ZN 501 1_555 A NE2 HIS 83 A HIS 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc9 B ZN ZN . A ZN 501 1_555 A NE2 HIS 119 A HIS 653 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc10 B ZN ZN . A ZN 501 1_555 A OD2 ASP 120 A ASP 654 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc11 B ZN ZN . A ZN 501 1_555 A OD1 ASP 230 A ASP 764 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc12 C MG MG . A MG 502 1_555 A OD1 ASP 120 A ASP 654 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? # _chem_comp.formula 'C10 H14 N4 O2' _chem_comp.formula_weight 222.244 _chem_comp.id IBM _chem_comp.mon_nstd_flag . _chem_comp.name 3-ISOBUTYL-1-METHYLXANTHINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C8 IBM sing 152 n y N9 C4 IBM sing 153 n y N9 HN9 IBM sing 154 n n C8 N7 IBM doub 155 n y C8 H8 IBM sing 156 n n N7 C5 IBM sing 157 n y C5 C4 IBM doub 158 n y C5 C6 IBM sing 159 n y C4 N3 IBM sing 160 n y N3 C2 IBM sing 161 n y N3 C11 IBM sing 162 n n C2 N1 IBM sing 163 n y C2 O2 IBM doub 164 n n N1 C6 IBM sing 165 n y N1 C10 IBM sing 166 n n C6 O6 IBM doub 167 n n C10 H101 IBM sing 168 n n C10 H102 IBM sing 169 n n C10 H103 IBM sing 170 n n C11 C12 IBM sing 171 n n C11 H111 IBM sing 172 n n C11 H112 IBM sing 173 n n C12 C13 IBM sing 174 n n C12 C14 IBM sing 175 n n C12 H12 IBM sing 176 n n C13 H131 IBM sing 177 n n C13 H132 IBM sing 178 n n C13 H133 IBM sing 179 n n C14 H141 IBM sing 180 n n C14 H142 IBM sing 181 n n C14 H143 IBM sing 182 n n # _atom_sites.entry_id 1RKP _atom_sites.fract_transf_matrix[1][1] 0.013431 _atom_sites.fract_transf_matrix[1][2] 0.007754 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015508 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007685 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 501 501 ZN ZN . C 3 MG A 1 502 502 MG MG . D 4 IBM A 1 201 201 IBM IBM . E 5 HOH A 1 1 1 HOH TIP . E 5 HOH A 2 2 2 HOH TIP . E 5 HOH A 3 3 3 HOH TIP . E 5 HOH A 4 4 4 HOH TIP . E 5 HOH A 5 5 5 HOH TIP . E 5 HOH A 6 6 6 HOH TIP . E 5 HOH A 7 7 7 HOH TIP . E 5 HOH A 8 8 8 HOH TIP . E 5 HOH A 9 9 9 HOH TIP . E 5 HOH A 10 10 10 HOH TIP . E 5 HOH A 11 11 11 HOH TIP . E 5 HOH A 12 12 12 HOH TIP . E 5 HOH A 13 13 13 HOH TIP . E 5 HOH A 14 14 14 HOH TIP . E 5 HOH A 15 15 15 HOH TIP . E 5 HOH A 16 16 16 HOH TIP . E 5 HOH A 17 17 17 HOH TIP . E 5 HOH A 18 18 18 HOH TIP . E 5 HOH A 19 19 19 HOH TIP . E 5 HOH A 20 20 20 HOH TIP . E 5 HOH A 21 21 21 HOH TIP . E 5 HOH A 22 22 22 HOH TIP . E 5 HOH A 23 23 23 HOH TIP . E 5 HOH A 24 24 24 HOH TIP . E 5 HOH A 25 25 25 HOH TIP . E 5 HOH A 26 26 26 HOH TIP . E 5 HOH A 27 27 27 HOH TIP . E 5 HOH A 28 28 28 HOH TIP . E 5 HOH A 29 29 29 HOH TIP . E 5 HOH A 30 30 30 HOH TIP . E 5 HOH A 31 31 31 HOH TIP . E 5 HOH A 32 32 32 HOH TIP . E 5 HOH A 33 33 33 HOH TIP . E 5 HOH A 34 34 34 HOH TIP . E 5 HOH A 35 35 35 HOH TIP . E 5 HOH A 36 36 36 HOH TIP . E 5 HOH A 37 37 37 HOH TIP . E 5 HOH A 38 38 38 HOH TIP . E 5 HOH A 39 39 39 HOH TIP . E 5 HOH A 40 40 40 HOH TIP . E 5 HOH A 41 41 41 HOH TIP . E 5 HOH A 42 42 42 HOH TIP . E 5 HOH A 43 43 43 HOH TIP . E 5 HOH A 44 44 44 HOH TIP . E 5 HOH A 45 45 45 HOH TIP . E 5 HOH A 46 46 46 HOH TIP . E 5 HOH A 47 47 47 HOH TIP . E 5 HOH A 48 48 48 HOH TIP . E 5 HOH A 49 49 49 HOH TIP . E 5 HOH A 50 50 50 HOH TIP . E 5 HOH A 51 51 51 HOH TIP . E 5 HOH A 52 52 52 HOH TIP . E 5 HOH A 53 53 53 HOH TIP . E 5 HOH A 54 54 54 HOH TIP . E 5 HOH A 55 55 55 HOH TIP . E 5 HOH A 56 56 56 HOH TIP . E 5 HOH A 57 57 57 HOH TIP . E 5 HOH A 58 58 58 HOH TIP . E 5 HOH A 59 59 59 HOH TIP . E 5 HOH A 60 60 60 HOH TIP . E 5 HOH A 61 61 61 HOH TIP . E 5 HOH A 62 62 62 HOH TIP . E 5 HOH A 63 63 63 HOH TIP . E 5 HOH A 64 64 64 HOH TIP . E 5 HOH A 65 65 65 HOH TIP . E 5 HOH A 66 66 66 HOH TIP . E 5 HOH A 67 67 67 HOH TIP . E 5 HOH A 68 68 68 HOH TIP . E 5 HOH A 69 69 69 HOH TIP . E 5 HOH A 70 70 70 HOH TIP . E 5 HOH A 71 71 71 HOH TIP . E 5 HOH A 72 72 72 HOH TIP . E 5 HOH A 73 73 73 HOH TIP . E 5 HOH A 74 74 74 HOH TIP . E 5 HOH A 75 75 75 HOH TIP . E 5 HOH A 76 76 76 HOH TIP . E 5 HOH A 77 77 77 HOH TIP . E 5 HOH A 78 78 78 HOH TIP . E 5 HOH A 79 79 79 HOH TIP . E 5 HOH A 80 80 80 HOH TIP . E 5 HOH A 81 81 81 HOH TIP . E 5 HOH A 82 82 82 HOH TIP . E 5 HOH A 83 83 83 HOH TIP . E 5 HOH A 84 84 84 HOH TIP . E 5 HOH A 85 85 85 HOH TIP . E 5 HOH A 86 86 86 HOH TIP . E 5 HOH A 87 87 87 HOH TIP . E 5 HOH A 88 88 88 HOH TIP . E 5 HOH A 89 89 89 HOH TIP . E 5 HOH A 90 90 90 HOH TIP . E 5 HOH A 91 91 91 HOH TIP . E 5 HOH A 92 92 92 HOH TIP . E 5 HOH A 93 93 93 HOH TIP . E 5 HOH A 94 94 94 HOH TIP . E 5 HOH A 95 95 95 HOH TIP . E 5 HOH A 96 96 96 HOH TIP . E 5 HOH A 97 97 97 HOH TIP . E 5 HOH A 98 98 98 HOH TIP . E 5 HOH A 99 99 99 HOH TIP . E 5 HOH A 100 100 100 HOH TIP . E 5 HOH A 101 101 101 HOH TIP . E 5 HOH A 102 102 102 HOH TIP . E 5 HOH A 103 103 103 HOH TIP . E 5 HOH A 104 104 104 HOH TIP . E 5 HOH A 105 105 105 HOH TIP . E 5 HOH A 106 106 106 HOH TIP . E 5 HOH A 107 107 107 HOH TIP . E 5 HOH A 108 108 108 HOH TIP . E 5 HOH A 109 109 109 HOH TIP . E 5 HOH A 110 110 110 HOH TIP . E 5 HOH A 111 111 111 HOH TIP . E 5 HOH A 112 112 112 HOH TIP . E 5 HOH A 113 113 113 HOH TIP . E 5 HOH A 114 114 114 HOH TIP . E 5 HOH A 115 115 115 HOH TIP . E 5 HOH A 116 116 116 HOH TIP . E 5 HOH A 117 117 117 HOH TIP . E 5 HOH A 118 118 118 HOH TIP . E 5 HOH A 119 119 119 HOH TIP . E 5 HOH A 120 120 120 HOH TIP . E 5 HOH A 121 121 121 HOH TIP . E 5 HOH A 122 122 122 HOH TIP . E 5 HOH A 123 123 123 HOH TIP . E 5 HOH A 124 124 124 HOH TIP . E 5 HOH A 125 125 125 HOH TIP . E 5 HOH A 126 126 126 HOH TIP . E 5 HOH A 127 127 127 HOH TIP . E 5 HOH A 128 128 128 HOH TIP . E 5 HOH A 129 129 129 HOH TIP . E 5 HOH A 130 130 130 HOH TIP . E 5 HOH A 131 131 131 HOH TIP . E 5 HOH A 132 132 132 HOH TIP . E 5 HOH A 133 133 133 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 IBM . . . D 4 44.028 15.049 46.236 1 28.15 ? N9 IBM 201 A 1 HETATM 2 C C8 IBM . . . D 4 44.543 16.078 45.487 1 28.08 ? C8 IBM 201 A 1 HETATM 3 N N7 IBM . . . D 4 44.595 17.219 46.13 1 27.72 ? N7 IBM 201 A 1 HETATM 4 C C5 IBM . . . D 4 44.086 16.918 47.383 1 27.69 ? C5 IBM 201 A 1 HETATM 5 C C4 IBM . . . D 4 43.733 15.588 47.465 1 27.89 ? C4 IBM 201 A 1 HETATM 6 N N3 IBM . . . D 4 43.211 14.942 48.529 1 27.45 ? N3 IBM 201 A 1 HETATM 7 C C2 IBM . . . D 4 43.014 15.73 49.631 1 27.1 ? C2 IBM 201 A 1 HETATM 8 N N1 IBM . . . D 4 43.359 17.082 49.644 1 26.85 ? N1 IBM 201 A 1 HETATM 9 C C6 IBM . . . D 4 43.892 17.679 48.527 1 27.2 ? C6 IBM 201 A 1 HETATM 10 O O6 IBM . . . D 4 44.188 18.869 48.533 1 25.42 ? O6 IBM 201 A 1 HETATM 11 O O2 IBM . . . D 4 42.52 15.233 50.637 1 26.07 ? O2 IBM 201 A 1 HETATM 12 C C10 IBM . . . D 4 43.191 17.857 50.865 1 25.87 ? C10 IBM 201 A 1 HETATM 13 C C11 IBM . . . D 4 42.888 13.523 48.498 1 26.89 ? C11 IBM 201 A 1 HETATM 14 C C12 IBM . . . D 4 44.172 12.707 48.654 1 28.56 ? C12 IBM 201 A 1 HETATM 15 C C13 IBM . . . D 4 44.985 13.165 49.866 1 29.32 ? C13 IBM 201 A 1 HETATM 16 C C14 IBM . . . D 4 43.85 11.222 48.752 1 29 ? C14 IBM 201 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 16 #