data_1RKR # _model_server_result.job_id 4lGWzjYrkMdTbPP9JsfRhA _model_server_result.datetime_utc '2024-10-13 02:28:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rkr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 1RKR # _exptl.entry_id 1RKR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.99 _cell.angle_gamma 90 _cell.entry_id 1RKR _cell.length_a 130.67 _cell.length_b 54.26 _cell.length_c 74.55 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RKR _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 PISA dimeric 2 software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 A,E,I 5 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 26 A CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 B SG CYS 3 B CYS 3 1_555 B SG CYS 26 B CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf3 C SG CYS 3 C CYS 3 1_555 C SG CYS 26 C CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf4 D SG CYS 3 D CYS 3 1_555 D SG CYS 26 D CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc1 A O GLY 45 A GLY 45 1_555 E CU CU . A CU 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc2 A ND1 HIS 46 A HIS 46 1_555 E CU CU . A CU 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc3 A SG CYS 112 A CYS 112 1_555 E CU CU . A CU 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc4 A ND1 HIS 117 A HIS 117 1_555 E CU CU . A CU 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? metalc ? metalc5 B O GLY 45 B GLY 45 1_555 F CU CU . B CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc6 B ND1 HIS 46 B HIS 46 1_555 F CU CU . B CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc7 B SG CYS 112 B CYS 112 1_555 F CU CU . B CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc8 B ND1 HIS 117 B HIS 117 1_555 F CU CU . B CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc9 C O GLY 45 C GLY 45 1_555 G CU CU . C CU 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc10 C ND1 HIS 46 C HIS 46 1_555 G CU CU . C CU 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.877 ? metalc ? metalc11 C SG CYS 112 C CYS 112 1_555 G CU CU . C CU 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc12 C ND1 HIS 117 C HIS 117 1_555 G CU CU . C CU 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.869 ? metalc ? metalc13 D O GLY 45 D GLY 45 1_555 H CU CU . D CU 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc14 D ND1 HIS 46 D HIS 46 1_555 H CU CU . D CU 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc15 D SG CYS 112 D CYS 112 1_555 H CU CU . D CU 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc16 D ND1 HIS 117 D HIS 117 1_555 H CU CU . D CU 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1RKR _atom_sites.fract_transf_matrix[1][1] 0.007653 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000803 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01843 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013487 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CU A 1 200 200 CU CU . F 2 CU B 1 201 201 CU CU . G 2 CU C 1 202 202 CU CU . H 2 CU D 1 203 203 CU CU . I 3 HOH A 1 501 501 HOH HOH . I 3 HOH A 2 503 503 HOH HOH . I 3 HOH A 3 506 506 HOH HOH . I 3 HOH A 4 507 507 HOH HOH . I 3 HOH A 5 509 509 HOH HOH . I 3 HOH A 6 515 515 HOH HOH . I 3 HOH A 7 519 519 HOH HOH . I 3 HOH A 8 520 520 HOH HOH . I 3 HOH A 9 526 526 HOH HOH . I 3 HOH A 10 527 527 HOH HOH . I 3 HOH A 11 528 528 HOH HOH . I 3 HOH A 12 529 529 HOH HOH . I 3 HOH A 13 530 530 HOH HOH . I 3 HOH A 14 531 531 HOH HOH . I 3 HOH A 15 532 532 HOH HOH . I 3 HOH A 16 533 533 HOH HOH . I 3 HOH A 17 534 534 HOH HOH . I 3 HOH A 18 535 535 HOH HOH . I 3 HOH A 19 536 536 HOH HOH . I 3 HOH A 20 537 537 HOH HOH . I 3 HOH A 21 538 538 HOH HOH . I 3 HOH A 22 539 539 HOH HOH . I 3 HOH A 23 575 575 HOH HOH . I 3 HOH A 24 576 576 HOH HOH . I 3 HOH A 25 577 577 HOH HOH . I 3 HOH A 26 578 578 HOH HOH . J 3 HOH B 1 508 508 HOH HOH . J 3 HOH B 2 510 510 HOH HOH . J 3 HOH B 3 516 516 HOH HOH . J 3 HOH B 4 518 518 HOH HOH . J 3 HOH B 5 521 521 HOH HOH . J 3 HOH B 6 540 540 HOH HOH . J 3 HOH B 7 541 541 HOH HOH . J 3 HOH B 8 542 542 HOH HOH . J 3 HOH B 9 543 543 HOH HOH . J 3 HOH B 10 544 544 HOH HOH . J 3 HOH B 11 545 545 HOH HOH . J 3 HOH B 12 546 546 HOH HOH . J 3 HOH B 13 547 547 HOH HOH . J 3 HOH B 14 548 548 HOH HOH . J 3 HOH B 15 549 549 HOH HOH . J 3 HOH B 16 550 550 HOH HOH . J 3 HOH B 17 551 551 HOH HOH . J 3 HOH B 18 552 552 HOH HOH . J 3 HOH B 19 553 553 HOH HOH . J 3 HOH B 20 554 554 HOH HOH . J 3 HOH B 21 555 555 HOH HOH . J 3 HOH B 22 556 556 HOH HOH . J 3 HOH B 23 557 557 HOH HOH . J 3 HOH B 24 558 558 HOH HOH . J 3 HOH B 25 559 559 HOH HOH . J 3 HOH B 26 560 560 HOH HOH . J 3 HOH B 27 561 561 HOH HOH . J 3 HOH B 28 579 579 HOH HOH . J 3 HOH B 29 580 580 HOH HOH . J 3 HOH B 30 581 581 HOH HOH . K 3 HOH C 1 504 504 HOH HOH . K 3 HOH C 2 511 511 HOH HOH . K 3 HOH C 3 512 512 HOH HOH . K 3 HOH C 4 513 513 HOH HOH . K 3 HOH C 5 517 517 HOH HOH . K 3 HOH C 6 522 522 HOH HOH . K 3 HOH C 7 523 523 HOH HOH . K 3 HOH C 8 524 524 HOH HOH . K 3 HOH C 9 525 525 HOH HOH . K 3 HOH C 10 562 562 HOH HOH . K 3 HOH C 11 563 563 HOH HOH . K 3 HOH C 12 564 564 HOH HOH . K 3 HOH C 13 565 565 HOH HOH . K 3 HOH C 14 566 566 HOH HOH . K 3 HOH C 15 574 574 HOH HOH . L 3 HOH D 1 502 502 HOH HOH . L 3 HOH D 2 505 505 HOH HOH . L 3 HOH D 3 514 514 HOH HOH . L 3 HOH D 4 567 567 HOH HOH . L 3 HOH D 5 568 568 HOH HOH . L 3 HOH D 6 569 569 HOH HOH . L 3 HOH D 7 570 570 HOH HOH . L 3 HOH D 8 571 571 HOH HOH . L 3 HOH D 9 572 572 HOH HOH . L 3 HOH D 10 573 573 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x 54.735 _atom_site.Cartn_y 5.365 _atom_site.Cartn_z 40.964 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 17.1 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 201 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #