data_1RKS # _model_server_result.job_id P0mwRrOLfrArm0ds5zbIHQ _model_server_result.datetime_utc '2024-11-24 14:46:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rks # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":313}' # _entry.id 1RKS # _exptl.entry_id 1RKS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1RKS _cell.length_a 95.21 _cell.length_b 95.21 _cell.length_c 154.46 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RKS _symmetry.cell_setting hexagonal _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 9_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 102.973333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 1RKS _atom_sites.fract_transf_matrix[1][1] 0.010503 _atom_sites.fract_transf_matrix[1][2] 0.006064 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012128 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006474 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RIB A 1 311 311 RIB RIB . C 3 PO4 A 1 312 312 PO4 PO4 . D 3 PO4 A 1 313 313 PO4 PO4 . E 4 HOH A 1 314 314 HOH HOH . E 4 HOH A 2 315 315 HOH HOH . E 4 HOH A 3 316 316 HOH HOH . E 4 HOH A 4 317 317 HOH HOH . E 4 HOH A 5 318 318 HOH HOH . E 4 HOH A 6 319 319 HOH HOH . E 4 HOH A 7 320 320 HOH HOH . E 4 HOH A 8 321 321 HOH HOH . E 4 HOH A 9 322 322 HOH HOH . E 4 HOH A 10 323 323 HOH HOH . E 4 HOH A 11 324 324 HOH HOH . E 4 HOH A 12 325 325 HOH HOH . E 4 HOH A 13 326 326 HOH HOH . E 4 HOH A 14 327 327 HOH HOH . E 4 HOH A 15 328 328 HOH HOH . E 4 HOH A 16 329 329 HOH HOH . E 4 HOH A 17 330 330 HOH HOH . E 4 HOH A 18 331 331 HOH HOH . E 4 HOH A 19 332 332 HOH HOH . E 4 HOH A 20 333 333 HOH HOH . E 4 HOH A 21 334 334 HOH HOH . E 4 HOH A 22 335 335 HOH HOH . E 4 HOH A 23 336 336 HOH HOH . E 4 HOH A 24 337 337 HOH HOH . E 4 HOH A 25 338 338 HOH HOH . E 4 HOH A 26 339 339 HOH HOH . E 4 HOH A 27 340 340 HOH HOH . E 4 HOH A 28 341 341 HOH HOH . E 4 HOH A 29 342 342 HOH HOH . E 4 HOH A 30 343 343 HOH HOH . E 4 HOH A 31 344 344 HOH HOH . E 4 HOH A 32 345 345 HOH HOH . E 4 HOH A 33 346 346 HOH HOH . E 4 HOH A 34 347 347 HOH HOH . E 4 HOH A 35 348 348 HOH HOH . E 4 HOH A 36 349 349 HOH HOH . E 4 HOH A 37 350 350 HOH HOH . E 4 HOH A 38 351 351 HOH HOH . E 4 HOH A 39 352 352 HOH HOH . E 4 HOH A 40 353 353 HOH HOH . E 4 HOH A 41 354 354 HOH HOH . E 4 HOH A 42 355 355 HOH HOH . E 4 HOH A 43 356 356 HOH HOH . E 4 HOH A 44 357 357 HOH HOH . E 4 HOH A 45 358 358 HOH HOH . E 4 HOH A 46 359 359 HOH HOH . E 4 HOH A 47 360 360 HOH HOH . E 4 HOH A 48 361 361 HOH HOH . E 4 HOH A 49 362 362 HOH HOH . E 4 HOH A 50 363 363 HOH HOH . E 4 HOH A 51 364 364 HOH HOH . E 4 HOH A 52 365 365 HOH HOH . E 4 HOH A 53 366 366 HOH HOH . E 4 HOH A 54 367 367 HOH HOH . E 4 HOH A 55 368 368 HOH HOH . E 4 HOH A 56 369 369 HOH HOH . E 4 HOH A 57 370 370 HOH HOH . E 4 HOH A 58 371 371 HOH HOH . E 4 HOH A 59 372 372 HOH HOH . E 4 HOH A 60 373 373 HOH HOH . E 4 HOH A 61 374 374 HOH HOH . E 4 HOH A 62 375 375 HOH HOH . E 4 HOH A 63 376 376 HOH HOH . E 4 HOH A 64 377 377 HOH HOH . E 4 HOH A 65 378 378 HOH HOH . E 4 HOH A 66 379 379 HOH HOH . E 4 HOH A 67 380 380 HOH HOH . E 4 HOH A 68 381 381 HOH HOH . E 4 HOH A 69 382 382 HOH HOH . E 4 HOH A 70 383 383 HOH HOH . E 4 HOH A 71 384 384 HOH HOH . E 4 HOH A 72 385 385 HOH HOH . E 4 HOH A 73 386 386 HOH HOH . E 4 HOH A 74 387 387 HOH HOH . E 4 HOH A 75 388 388 HOH HOH . E 4 HOH A 76 389 389 HOH HOH . E 4 HOH A 77 390 390 HOH HOH . E 4 HOH A 78 391 391 HOH HOH . E 4 HOH A 79 392 392 HOH HOH . E 4 HOH A 80 393 393 HOH HOH . E 4 HOH A 81 394 394 HOH HOH . E 4 HOH A 82 395 395 HOH HOH . E 4 HOH A 83 396 396 HOH HOH . E 4 HOH A 84 397 397 HOH HOH . E 4 HOH A 85 398 398 HOH HOH . E 4 HOH A 86 399 399 HOH HOH . E 4 HOH A 87 400 400 HOH HOH . E 4 HOH A 88 401 401 HOH HOH . E 4 HOH A 89 402 402 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 3 -5.774 9.721 51.583 0.5 56.03 ? P PO4 313 A 1 HETATM 2 O O1 PO4 . . . D 3 -6.752 9.317 52.644 0.5 56.09 ? O1 PO4 313 A 1 HETATM 3 O O2 PO4 . . . D 3 -6.431 10.531 50.516 0.5 55.95 ? O2 PO4 313 A 1 HETATM 4 O O3 PO4 . . . D 3 -4.665 10.531 52.176 0.5 56.14 ? O3 PO4 313 A 1 HETATM 5 O O4 PO4 . . . D 3 -5.221 8.462 50.965 0.5 56.19 ? O4 PO4 313 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 427 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #