data_1RKW
#
_model_server_result.job_id            Yb5J-vuQJZzb0owg3OQpEg 
_model_server_result.datetime_utc      '2024-10-18 15:30:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1rkw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":225}' 
#
_entry.id    1RKW 
#
_exptl.entry_id    1RKW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              340.419 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,5-BIS(4-AMIDINOPHENOXY)PENTANE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1RKW 
_cell.length_a            172.05 
_cell.length_b            172.05 
_cell.length_c            94.43 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1RKW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        94 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 42 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,P,Q,R,S,T,U,BA,DA 1 1 
B,D,H,I,J,K,L,M,N,O,V,W,X,Y,Z,AA,CA,EA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             P 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C19 H24 N4 O2' 
_chem_comp.formula_weight    340.419 
_chem_comp.id                PNT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,5-BIS(4-AMIDINOPHENOXY)PENTANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PNT doub 260 n y 
C1 C6 PNT sing 261 n y 
C1 O1 PNT sing 262 n n 
C2 C3 PNT sing 263 n y 
C2 H2 PNT sing 264 n n 
C3 C4 PNT doub 265 n y 
C3 H3 PNT sing 266 n n 
C4 C5 PNT sing 267 n y 
C4 C9 PNT sing 268 n n 
C5 C6 PNT doub 269 n y 
C5 H5 PNT sing 270 n n 
C6 H6 PNT sing 271 n n 
C7 C8 PNT sing 272 n n 
C7 O1 PNT sing 273 n n 
C7 H71 PNT sing 274 n n 
C7 H72 PNT sing 275 n n 
C8 C10 PNT sing 276 n n 
C8 H81 PNT sing 277 n n 
C8 H82 PNT sing 278 n n 
C9 N1 PNT doub 279 n n 
C9 N2 PNT sing 280 n n 
C10 C8' PNT sing 281 n n 
C10 H101 PNT sing 282 n n 
C10 H102 PNT sing 283 n n 
C1' C2' PNT doub 284 n y 
C1' C6' PNT sing 285 n y 
C1' O1' PNT sing 286 n n 
C2' C3' PNT sing 287 n y 
C2' H2' PNT sing 288 n n 
C3' C4' PNT doub 289 n y 
C3' H3' PNT sing 290 n n 
C4' C5' PNT sing 291 n y 
C4' C9' PNT sing 292 n n 
C5' C6' PNT doub 293 n y 
C5' H5' PNT sing 294 n n 
C6' H6' PNT sing 295 n n 
C7' C8' PNT sing 296 n n 
C7' O1' PNT sing 297 n n 
C7' "H7'1" PNT sing 298 n n 
C7' "H7'2" PNT sing 299 n n 
C8' "H8'1" PNT sing 300 n n 
C8' "H8'2" PNT sing 301 n n 
C9' N1' PNT doub 302 n n 
C9' N2' PNT sing 303 n n 
N1 HN1 PNT sing 304 n n 
N2 HN2 PNT sing 305 n n 
N2 HN3 PNT sing 306 n n 
N1' "HN'1" PNT sing 307 n n 
N2' "HN'2" PNT sing 308 n n 
N2' "HN'3" PNT sing 309 n n 
#
_atom_sites.entry_id                     1RKW 
_atom_sites.fract_transf_matrix[1][1]    0.005812 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005812 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01059 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SO4 B 1 299 599 SO4 SO4 . 
F 2 SO4 B 1 259 199 SO4 SO4 . 
G 2 SO4 B 1 269 999 SO4 SO4 . 
H 2 SO4 D 1 499 899 SO4 SO4 . 
I 2 SO4 D 1 219 69 SO4 SO4 . 
J 2 SO4 D 1 229 69 SO4 SO4 . 
K 2 SO4 D 1 799 999 SO4 SO4 . 
L 2 SO4 D 1 289 79 SO4 SO4 . 
M 2 SO4 D 1 779 779 SO4 SO4 . 
N 2 SO4 D 1 539 599 SO4 SO4 . 
O 2 SO4 D 1 639 639 SO4 SO4 . 
P 3 PNT A 1 225 25 PNT PNT . 
Q 2 SO4 A 1 199 599 SO4 SO4 . 
R 2 SO4 A 1 399 299 SO4 SO4 . 
S 2 SO4 A 1 699 699 SO4 SO4 . 
T 2 SO4 A 1 279 79 SO4 SO4 . 
U 2 SO4 A 1 579 579 SO4 SO4 . 
V 2 SO4 E 1 599 899 SO4 SO4 . 
W 2 SO4 E 1 239 49 SO4 SO4 . 
X 2 SO4 E 1 899 399 SO4 SO4 . 
Y 2 SO4 E 1 999 799 SO4 SO4 . 
Z 2 SO4 E 1 249 89 SO4 SO4 . 
AA 2 SO4 E 1 209 39 SO4 SO4 . 
BA 4 HOH B 1 300 18 HOH WAT . 
BA 4 HOH B 2 301 34 HOH WAT . 
BA 4 HOH B 3 302 35 HOH WAT . 
BA 4 HOH B 4 303 38 HOH WAT . 
BA 4 HOH B 5 304 41 HOH WAT . 
BA 4 HOH B 6 305 79 HOH WAT . 
BA 4 HOH B 7 306 98 HOH WAT . 
BA 4 HOH B 8 307 117 HOH WAT . 
BA 4 HOH B 9 308 129 HOH WAT . 
BA 4 HOH B 10 309 131 HOH WAT . 
CA 4 HOH D 1 800 59 HOH WAT . 
CA 4 HOH D 2 801 60 HOH WAT . 
CA 4 HOH D 3 802 62 HOH WAT . 
CA 4 HOH D 4 803 70 HOH WAT . 
CA 4 HOH D 5 804 78 HOH WAT . 
CA 4 HOH D 6 805 88 HOH WAT . 
CA 4 HOH D 7 806 93 HOH WAT . 
CA 4 HOH D 8 807 94 HOH WAT . 
CA 4 HOH D 9 808 96 HOH WAT . 
CA 4 HOH D 10 809 100 HOH WAT . 
CA 4 HOH D 11 810 127 HOH WAT . 
CA 4 HOH D 12 811 145 HOH WAT . 
DA 4 HOH A 1 700 5 HOH WAT . 
DA 4 HOH A 2 701 10 HOH WAT . 
DA 4 HOH A 3 702 11 HOH WAT . 
DA 4 HOH A 4 703 14 HOH WAT . 
DA 4 HOH A 5 704 16 HOH WAT . 
DA 4 HOH A 6 705 21 HOH WAT . 
DA 4 HOH A 7 706 24 HOH WAT . 
DA 4 HOH A 8 707 25 HOH WAT . 
DA 4 HOH A 9 708 26 HOH WAT . 
DA 4 HOH A 10 709 28 HOH WAT . 
DA 4 HOH A 11 710 29 HOH WAT . 
DA 4 HOH A 12 711 30 HOH WAT . 
DA 4 HOH A 13 712 39 HOH WAT . 
DA 4 HOH A 14 713 40 HOH WAT . 
DA 4 HOH A 15 714 51 HOH WAT . 
DA 4 HOH A 16 715 53 HOH WAT . 
DA 4 HOH A 17 716 54 HOH WAT . 
DA 4 HOH A 18 717 55 HOH WAT . 
DA 4 HOH A 19 718 56 HOH WAT . 
DA 4 HOH A 20 719 57 HOH WAT . 
DA 4 HOH A 21 720 66 HOH WAT . 
DA 4 HOH A 22 721 82 HOH WAT . 
DA 4 HOH A 23 722 84 HOH WAT . 
DA 4 HOH A 24 723 87 HOH WAT . 
DA 4 HOH A 25 724 90 HOH WAT . 
DA 4 HOH A 26 725 92 HOH WAT . 
DA 4 HOH A 27 726 102 HOH WAT . 
DA 4 HOH A 28 727 103 HOH WAT . 
DA 4 HOH A 29 728 104 HOH WAT . 
DA 4 HOH A 30 729 106 HOH WAT . 
DA 4 HOH A 31 730 107 HOH WAT . 
DA 4 HOH A 32 731 112 HOH WAT . 
DA 4 HOH A 33 732 114 HOH WAT . 
DA 4 HOH A 34 733 116 HOH WAT . 
DA 4 HOH A 35 734 124 HOH WAT . 
EA 4 HOH E 1 1000 2 HOH WAT . 
EA 4 HOH E 2 1001 3 HOH WAT . 
EA 4 HOH E 3 1002 4 HOH WAT . 
EA 4 HOH E 4 1003 6 HOH WAT . 
EA 4 HOH E 5 1004 9 HOH WAT . 
EA 4 HOH E 6 1005 13 HOH WAT . 
EA 4 HOH E 7 1006 17 HOH WAT . 
EA 4 HOH E 8 1007 32 HOH WAT . 
EA 4 HOH E 9 1008 33 HOH WAT . 
EA 4 HOH E 10 1009 50 HOH WAT . 
EA 4 HOH E 11 1010 52 HOH WAT . 
EA 4 HOH E 12 1011 61 HOH WAT . 
EA 4 HOH E 13 1012 71 HOH WAT . 
EA 4 HOH E 14 1013 73 HOH WAT . 
EA 4 HOH E 15 1014 83 HOH WAT . 
EA 4 HOH E 16 1015 86 HOH WAT . 
EA 4 HOH E 17 1016 95 HOH WAT . 
EA 4 HOH E 18 1017 109 HOH WAT . 
EA 4 HOH E 19 1018 133 HOH WAT . 
EA 4 HOH E 20 1019 140 HOH WAT . 
EA 4 HOH E 21 1020 141 HOH WAT . 
EA 4 HOH E 22 1021 143 HOH WAT . 
EA 4 HOH E 23 1022 144 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PNT . . . P 3 -67.781 -44.6 1.505 1 61.35 ? C1 PNT 225 A 1 
HETATM 2 C C2 PNT . . . P 3 -67.303 -43.269 1.603 1 59.02 ? C2 PNT 225 A 1 
HETATM 3 C C3 PNT . . . P 3 -68.241 -42.227 1.707 1 62.13 ? C3 PNT 225 A 1 
HETATM 4 C C4 PNT . . . P 3 -69.673 -42.472 1.725 1 65.19 ? C4 PNT 225 A 1 
HETATM 5 C C5 PNT . . . P 3 -70.098 -43.812 1.636 1 61.9 ? C5 PNT 225 A 1 
HETATM 6 C C6 PNT . . . P 3 -69.2 -44.843 1.524 1 58.24 ? C6 PNT 225 A 1 
HETATM 7 C C7 PNT . . . P 3 -65.619 -45.321 0.843 1 60.52 ? C7 PNT 225 A 1 
HETATM 8 C C8 PNT . . . P 3 -65.167 -46.753 0.975 1 70.33 ? C8 PNT 225 A 1 
HETATM 9 C C9 PNT . . . P 3 -70.591 -41.473 1.827 1 59.44 ? C9 PNT 225 A 1 
HETATM 10 C C10 PNT . . . P 3 -63.721 -46.461 0.834 1 68.29 ? C10 PNT 225 A 1 
HETATM 11 C C1' PNT . . . P 3 -59.413 -45.626 2.3 1 77.29 ? C1' PNT 225 A 1 
HETATM 12 C C2' PNT . . . P 3 -59.097 -44.687 1.319 1 79.79 ? C2' PNT 225 A 1 
HETATM 13 C C3' PNT . . . P 3 -57.758 -44.574 0.907 1 78.45 ? C3' PNT 225 A 1 
HETATM 14 C C4' PNT . . . P 3 -56.711 -45.386 1.465 1 84.81 ? C4' PNT 225 A 1 
HETATM 15 C C5' PNT . . . P 3 -57.042 -46.307 2.429 1 77.65 ? C5' PNT 225 A 1 
HETATM 16 C C6' PNT . . . P 3 -58.375 -46.433 2.852 1 81.1 ? C6' PNT 225 A 1 
HETATM 17 C C7' PNT . . . P 3 -61.549 -46.034 1.625 1 68.56 ? C7' PNT 225 A 1 
HETATM 18 C C8' PNT . . . P 3 -62.946 -46.282 2.107 1 62.56 ? C8' PNT 225 A 1 
HETATM 19 C C9' PNT . . . P 3 -55.395 -45.263 1.049 1 91.35 ? C9' PNT 225 A 1 
HETATM 20 O O1 PNT . . . P 3 -66.958 -45.64 1.411 1 61.71 ? O1 PNT 225 A 1 
HETATM 21 O O1' PNT . . . P 3 -60.662 -45.805 2.739 1 73.49 ? O1' PNT 225 A 1 
HETATM 22 N N1 PNT . . . P 3 -70.172 -40.215 1.882 1 65.64 ? N1 PNT 225 A 1 
HETATM 23 N N2 PNT . . . P 3 -71.933 -41.726 1.876 1 70.95 ? N2 PNT 225 A 1 
HETATM 24 N N1' PNT . . . P 3 -55.094 -44.339 0.092 1 98.32 ? N1' PNT 225 A 1 
HETATM 25 N N2' PNT . . . P 3 -54.356 -46.054 1.579 1 85.15 ? N2' PNT 225 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           25 
#