data_1RL3 # _model_server_result.job_id TXc8rEo0BNkDouLsdfEbcA _model_server_result.datetime_utc '2024-10-14 00:25:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rl3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 1RL3 # _exptl.entry_id 1RL3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 345.205 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CYCLIC GUANOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1RL3 _cell.length_a 90.3 _cell.length_b 90.3 _cell.length_c 177.6 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RL3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C10 H12 N5 O7 P' _chem_comp.formula_weight 345.205 _chem_comp.id PCG _chem_comp.mon_nstd_flag . _chem_comp.name 'CYCLIC GUANOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A PCG sing 250 n n PA O2A PCG doub 251 n n PA O5' PCG sing 252 n n PA O3' PCG sing 253 n n O1A HO1A PCG sing 254 n n O5' C5' PCG sing 255 n n C5' C4' PCG sing 256 n n C5' "H5'1" PCG sing 257 n n C5' "H5'2" PCG sing 258 n n C4' O4' PCG sing 259 n n C4' C3' PCG sing 260 n n C4' H4' PCG sing 261 n n O4' C1' PCG sing 262 n n C3' O3' PCG sing 263 n n C3' C2' PCG sing 264 n n C3' H3' PCG sing 265 n n C2' O2' PCG sing 266 n n C2' C1' PCG sing 267 n n C2' H2' PCG sing 268 n n O2' HO2' PCG sing 269 n n C1' N9 PCG sing 270 n n C1' H1' PCG sing 271 n n N9 C8 PCG sing 272 n y N9 C4 PCG sing 273 n y C8 N7 PCG doub 274 n y C8 H8 PCG sing 275 n n N7 C5 PCG sing 276 n y C5 C6 PCG sing 277 n n C5 C4 PCG doub 278 n y C6 O6 PCG doub 279 n n C6 N1 PCG sing 280 n n N1 C2 PCG sing 281 n n N1 HN1 PCG sing 282 n n C2 N2 PCG sing 283 n n C2 N3 PCG doub 284 n n N2 HN21 PCG sing 285 n n N2 HN22 PCG sing 286 n n N3 C4 PCG sing 287 n n # _atom_sites.entry_id 1RL3 _atom_sites.fract_transf_matrix[1][1] 0.011074 _atom_sites.fract_transf_matrix[1][2] 0.006394 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012787 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005631 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PCG A 1 401 401 PCG PCG . D 3 GOL A 1 402 402 GOL GOL . E 2 PCG B 1 801 801 PCG PCG . F 3 GOL B 1 802 802 GOL GOL . G 3 GOL B 1 901 901 GOL GOL . H 4 HOH A 1 902 902 HOH WAT . H 4 HOH A 2 903 903 HOH WAT . H 4 HOH A 3 904 904 HOH WAT . H 4 HOH A 4 905 905 HOH WAT . H 4 HOH A 5 906 906 HOH WAT . H 4 HOH A 6 907 907 HOH WAT . H 4 HOH A 7 908 908 HOH WAT . H 4 HOH A 8 909 909 HOH WAT . H 4 HOH A 9 910 910 HOH WAT . H 4 HOH A 10 911 911 HOH WAT . H 4 HOH A 11 912 912 HOH WAT . H 4 HOH A 12 913 913 HOH WAT . I 4 HOH B 1 914 914 HOH WAT . I 4 HOH B 2 915 915 HOH WAT . I 4 HOH B 3 916 916 HOH WAT . I 4 HOH B 4 918 918 HOH WAT . I 4 HOH B 5 919 919 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA PCG . . . C 2 21.35 63.858 -3.442 1 39.85 ? PA PCG 401 A 1 HETATM 2 O O1A PCG . . . C 2 22.304 64.874 -2.85 1 44.09 ? O1A PCG 401 A 1 HETATM 3 O O2A PCG . . . C 2 20.915 64.507 -4.75 1 42.53 ? O2A PCG 401 A 1 HETATM 4 O O5' PCG . . . C 2 20.252 63.736 -2.431 1 34.6 ? O5' PCG 401 A 1 HETATM 5 C C5' PCG . . . C 2 20.433 63.276 -1.064 1 31.19 ? C5' PCG 401 A 1 HETATM 6 C C4' PCG . . . C 2 21.567 62.29 -1.016 1 33.43 ? C4' PCG 401 A 1 HETATM 7 O O4' PCG . . . C 2 21.636 61.304 0.064 1 34.98 ? O4' PCG 401 A 1 HETATM 8 C C3' PCG . . . C 2 21.615 61.517 -2.294 1 34.87 ? C3' PCG 401 A 1 HETATM 9 O O3' PCG . . . C 2 21.537 62.373 -3.524 1 37.86 ? O3' PCG 401 A 1 HETATM 10 C C2' PCG . . . C 2 22.845 60.664 -1.856 1 34.7 ? C2' PCG 401 A 1 HETATM 11 O O2' PCG . . . C 2 24.16 61.169 -1.993 1 32.59 ? O2' PCG 401 A 1 HETATM 12 C C1' PCG . . . C 2 22.63 60.384 -0.362 1 34.08 ? C1' PCG 401 A 1 HETATM 13 N N9 PCG . . . C 2 22.171 58.998 -0.032 1 35.96 ? N9 PCG 401 A 1 HETATM 14 C C8 PCG . . . C 2 22.509 58.067 0.949 1 37.64 ? C8 PCG 401 A 1 HETATM 15 N N7 PCG . . . C 2 21.814 56.942 0.843 1 35.5 ? N7 PCG 401 A 1 HETATM 16 C C5 PCG . . . C 2 20.939 57.083 -0.268 1 33.55 ? C5 PCG 401 A 1 HETATM 17 C C6 PCG . . . C 2 19.947 56.198 -0.87 1 33.66 ? C6 PCG 401 A 1 HETATM 18 O O6 PCG . . . C 2 19.608 55.034 -0.52 1 33.59 ? O6 PCG 401 A 1 HETATM 19 N N1 PCG . . . C 2 19.306 56.78 -2 1 33.95 ? N1 PCG 401 A 1 HETATM 20 C C2 PCG . . . C 2 19.55 58.068 -2.532 1 35.7 ? C2 PCG 401 A 1 HETATM 21 N N2 PCG . . . C 2 18.832 58.43 -3.619 1 35.34 ? N2 PCG 401 A 1 HETATM 22 N N3 PCG . . . C 2 20.462 58.931 -1.996 1 33.74 ? N3 PCG 401 A 1 HETATM 23 C C4 PCG . . . C 2 21.139 58.391 -0.859 1 34.68 ? C4 PCG 401 A 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 61 _model_server_stats.create_model_time_ms 57 _model_server_stats.query_time_ms 368 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 23 #