data_1RL3 # _model_server_result.job_id AvBQuNLBt-6suMEwDbmMpw _model_server_result.datetime_utc '2024-11-23 04:37:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rl3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":801}' # _entry.id 1RL3 # _exptl.entry_id 1RL3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 345.205 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CYCLIC GUANOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1RL3 _cell.length_a 90.3 _cell.length_b 90.3 _cell.length_c 177.6 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RL3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C10 H12 N5 O7 P' _chem_comp.formula_weight 345.205 _chem_comp.id PCG _chem_comp.mon_nstd_flag . _chem_comp.name 'CYCLIC GUANOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A PCG sing 250 n n PA O2A PCG doub 251 n n PA O5' PCG sing 252 n n PA O3' PCG sing 253 n n O1A HO1A PCG sing 254 n n O5' C5' PCG sing 255 n n C5' C4' PCG sing 256 n n C5' "H5'1" PCG sing 257 n n C5' "H5'2" PCG sing 258 n n C4' O4' PCG sing 259 n n C4' C3' PCG sing 260 n n C4' H4' PCG sing 261 n n O4' C1' PCG sing 262 n n C3' O3' PCG sing 263 n n C3' C2' PCG sing 264 n n C3' H3' PCG sing 265 n n C2' O2' PCG sing 266 n n C2' C1' PCG sing 267 n n C2' H2' PCG sing 268 n n O2' HO2' PCG sing 269 n n C1' N9 PCG sing 270 n n C1' H1' PCG sing 271 n n N9 C8 PCG sing 272 n y N9 C4 PCG sing 273 n y C8 N7 PCG doub 274 n y C8 H8 PCG sing 275 n n N7 C5 PCG sing 276 n y C5 C6 PCG sing 277 n n C5 C4 PCG doub 278 n y C6 O6 PCG doub 279 n n C6 N1 PCG sing 280 n n N1 C2 PCG sing 281 n n N1 HN1 PCG sing 282 n n C2 N2 PCG sing 283 n n C2 N3 PCG doub 284 n n N2 HN21 PCG sing 285 n n N2 HN22 PCG sing 286 n n N3 C4 PCG sing 287 n n # _atom_sites.entry_id 1RL3 _atom_sites.fract_transf_matrix[1][1] 0.011074 _atom_sites.fract_transf_matrix[1][2] 0.006394 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012787 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005631 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PCG A 1 401 401 PCG PCG . D 3 GOL A 1 402 402 GOL GOL . E 2 PCG B 1 801 801 PCG PCG . F 3 GOL B 1 802 802 GOL GOL . G 3 GOL B 1 901 901 GOL GOL . H 4 HOH A 1 902 902 HOH WAT . H 4 HOH A 2 903 903 HOH WAT . H 4 HOH A 3 904 904 HOH WAT . H 4 HOH A 4 905 905 HOH WAT . H 4 HOH A 5 906 906 HOH WAT . H 4 HOH A 6 907 907 HOH WAT . H 4 HOH A 7 908 908 HOH WAT . H 4 HOH A 8 909 909 HOH WAT . H 4 HOH A 9 910 910 HOH WAT . H 4 HOH A 10 911 911 HOH WAT . H 4 HOH A 11 912 912 HOH WAT . H 4 HOH A 12 913 913 HOH WAT . I 4 HOH B 1 914 914 HOH WAT . I 4 HOH B 2 915 915 HOH WAT . I 4 HOH B 3 916 916 HOH WAT . I 4 HOH B 4 918 918 HOH WAT . I 4 HOH B 5 919 919 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA PCG . . . E 2 64.926 98.509 10.112 1 30.11 ? PA PCG 801 B 1 HETATM 2 O O1A PCG . . . E 2 63.632 97.765 10.417 1 33.81 ? O1A PCG 801 B 1 HETATM 3 O O2A PCG . . . E 2 64.815 99.75 10.973 1 33.8 ? O2A PCG 801 B 1 HETATM 4 O O5' PCG . . . E 2 64.873 98.855 8.662 1 28.39 ? O5' PCG 801 B 1 HETATM 5 C C5' PCG . . . E 2 65.994 99.199 7.842 1 29.63 ? C5' PCG 801 B 1 HETATM 6 C C4' PCG . . . E 2 66.656 97.904 7.707 1 29.36 ? C4' PCG 801 B 1 HETATM 7 O O4' PCG . . . E 2 67.667 97.657 6.696 1 30.86 ? O4' PCG 801 B 1 HETATM 8 C C3' PCG . . . E 2 67.251 97.595 9.02 1 30.8 ? C3' PCG 801 B 1 HETATM 9 O O3' PCG . . . E 2 66.319 97.87 10.189 1 32.63 ? O3' PCG 801 B 1 HETATM 10 C C2' PCG . . . E 2 67.795 96.222 8.554 1 29.65 ? C2' PCG 801 B 1 HETATM 11 O O2' PCG . . . E 2 66.936 95.113 8.569 1 28.74 ? O2' PCG 801 B 1 HETATM 12 C C1' PCG . . . E 2 68.216 96.416 7.083 1 31.86 ? C1' PCG 801 B 1 HETATM 13 N N9 PCG . . . E 2 69.709 96.414 6.807 1 32.33 ? N9 PCG 801 B 1 HETATM 14 C C8 PCG . . . E 2 70.51 95.822 5.835 1 32.31 ? C8 PCG 801 B 1 HETATM 15 N N7 PCG . . . E 2 71.796 96.099 5.993 1 32.28 ? N7 PCG 801 B 1 HETATM 16 C C5 PCG . . . E 2 71.914 96.94 7.141 1 32.63 ? C5 PCG 801 B 1 HETATM 17 C C6 PCG . . . E 2 73.063 97.578 7.815 1 34.02 ? C6 PCG 801 B 1 HETATM 18 O O6 PCG . . . E 2 74.296 97.536 7.512 1 36.28 ? O6 PCG 801 B 1 HETATM 19 N N1 PCG . . . E 2 72.68 98.35 8.959 1 32.93 ? N1 PCG 801 B 1 HETATM 20 C C2 PCG . . . E 2 71.374 98.531 9.452 1 32.07 ? C2 PCG 801 B 1 HETATM 21 N N2 PCG . . . E 2 71.247 99.314 10.55 1 28.53 ? N2 PCG 801 B 1 HETATM 22 N N3 PCG . . . E 2 70.27 97.962 8.86 1 33.18 ? N3 PCG 801 B 1 HETATM 23 C C4 PCG . . . E 2 70.591 97.166 7.695 1 32.85 ? C4 PCG 801 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #