data_1RLC # _model_server_result.job_id lap4zzvyH--i2R1Qnbt0QQ _model_server_result.datetime_utc '2024-12-26 15:37:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rlc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":490}' # _entry.id 1RLC # _exptl.entry_id 1RLC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.115 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RLC _cell.length_a 149 _cell.length_b 149 _cell.length_c 136.8 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RLC _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 149 149 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 149 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 149 0 5 'crystal symmetry operation' 5_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 149 0 136.8 6 'crystal symmetry operation' 6_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 149 136.8 7 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 136.8 8 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+1 0 -1 0 -1 0 0 0 0 -1 149 149 136.8 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 172 L CYS 172 1_555 A SG CYS 192 L CYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? disulf ? disulf2 A SG CYS 247 L CYS 247 1_555 A SG CYS 247 L CYS 247 7_556 ? ? ? ? ? ? ? ? ? ? ? ? 1.678 ? # _chem_comp.formula 'C6 H14 O13 P2' _chem_comp.formula_weight 356.115 _chem_comp.id CAP _chem_comp.mon_nstd_flag . _chem_comp.name 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE _chem_comp.type saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CAP sing 70 n n C1 O1 CAP sing 71 n n C1 H11 CAP sing 72 n n C1 H12 CAP sing 73 n n C2 C3 CAP sing 74 n n C2 C CAP sing 75 n n C2 O2 CAP sing 76 n n C3 C4 CAP sing 77 n n C3 O3 CAP sing 78 n n C3 H3 CAP sing 79 n n C4 C5 CAP sing 80 n n C4 O4 CAP sing 81 n n C4 H4 CAP sing 82 n n C5 O5 CAP sing 83 n n C5 H51 CAP sing 84 n n C5 H52 CAP sing 85 n n C O6 CAP doub 86 n n C O7 CAP sing 87 n n O1 P1 CAP sing 88 n n O2 HO2 CAP sing 89 n n O3 HO3 CAP sing 90 n n O4 HO4 CAP sing 91 n n O5 P2 CAP sing 92 n n O7 HO7 CAP sing 93 n n P1 O1P CAP doub 94 n n P1 O2P CAP sing 95 n n P1 O3P CAP sing 96 n n P2 O4P CAP doub 97 n n P2 O5P CAP sing 98 n n P2 O6P CAP sing 99 n n O2P HOP2 CAP sing 100 n n O3P HOP3 CAP sing 101 n n O5P HOP5 CAP sing 102 n n O6P HOP6 CAP sing 103 n n # _atom_sites.entry_id 1RLC _atom_sites.fract_transf_matrix[1][1] 0.006711 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006711 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00731 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id CAP _pdbx_nonpoly_scheme.pdb_strand_id L _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 490 _pdbx_nonpoly_scheme.auth_seq_num 490 _pdbx_nonpoly_scheme.pdb_mon_id CAP _pdbx_nonpoly_scheme.auth_mon_id CAP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CAP . . . C 3 102.909 100.481 85.861 1 16.44 ? C1 CAP 490 L 1 HETATM 2 C C2 CAP . . . C 3 103.264 99.041 86.363 1 18.32 ? C2 CAP 490 L 1 HETATM 3 C C3 CAP . . . C 3 104.043 98.862 87.726 1 18.64 ? C3 CAP 490 L 1 HETATM 4 C C4 CAP . . . C 3 104.936 97.699 88.335 1 17.91 ? C4 CAP 490 L 1 HETATM 5 C C5 CAP . . . C 3 104.657 97.875 89.843 1 14.82 ? C5 CAP 490 L 1 HETATM 6 C C CAP . . . C 3 101.94 98.442 86.872 1 18.65 ? C CAP 490 L 1 HETATM 7 O O1 CAP . . . C 3 102.813 100.605 84.418 1 15.58 ? O1 CAP 490 L 1 HETATM 8 O O2 CAP . . . C 3 103.803 98.048 85.518 1 17.25 ? O2 CAP 490 L 1 HETATM 9 O O3 CAP . . . C 3 104.866 99.976 87.866 1 20 ? O3 CAP 490 L 1 HETATM 10 O O4 CAP . . . C 3 104.697 96.393 87.748 1 19.14 ? O4 CAP 490 L 1 HETATM 11 O O5 CAP . . . C 3 105.451 99.035 90.471 1 13.72 ? O5 CAP 490 L 1 HETATM 12 O O6 CAP . . . C 3 101.303 98.221 87.922 1 20.15 ? O6 CAP 490 L 1 HETATM 13 O O7 CAP . . . C 3 101.331 98.053 85.858 1 17.17 ? O7 CAP 490 L 1 HETATM 14 P P1 CAP . . . C 3 102.374 101.862 83.425 1 13.39 ? P1 CAP 490 L 1 HETATM 15 P P2 CAP . . . C 3 105.81 98.994 92.053 1 11.1 ? P2 CAP 490 L 1 HETATM 16 O O1P CAP . . . C 3 101.996 100.966 82.07 1 16.72 ? O1P CAP 490 L 1 HETATM 17 O O2P CAP . . . C 3 103.521 102.583 82.721 1 16.47 ? O2P CAP 490 L 1 HETATM 18 O O3P CAP . . . C 3 101.154 102.747 83.825 1 16.17 ? O3P CAP 490 L 1 HETATM 19 O O4P CAP . . . C 3 106.42 97.755 92.602 1 13.6 ? O4P CAP 490 L 1 HETATM 20 O O5P CAP . . . C 3 104.756 99.399 93.089 1 13.91 ? O5P CAP 490 L 1 HETATM 21 O O6P CAP . . . C 3 106.807 100.277 92.304 1 12.51 ? O6P CAP 490 L 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 21 #