data_1RLU # _model_server_result.job_id LihOYlKsf2_jeHd5oymGSw _model_server_result.datetime_utc '2024-11-26 16:02:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rlu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":404}' # _entry.id 1RLU # _exptl.entry_id 1RLU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1RLU _cell.length_a 88.413 _cell.length_b 88.413 _cell.length_c 178.522 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RLU _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 1RLU _atom_sites.fract_transf_matrix[1][1] 0.011311 _atom_sites.fract_transf_matrix[1][2] 0.00653 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01306 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005602 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GSP A 1 401 401 GSP GSP . D 3 GOL B 1 404 404 GOL GOL . E 4 HOH A 1 402 101 HOH HOH . E 4 HOH A 2 403 102 HOH HOH . E 4 HOH A 3 404 103 HOH HOH . E 4 HOH A 4 405 104 HOH HOH . E 4 HOH A 5 406 105 HOH HOH . E 4 HOH A 6 407 107 HOH HOH . E 4 HOH A 7 408 108 HOH HOH . E 4 HOH A 8 409 109 HOH HOH . E 4 HOH A 9 410 111 HOH HOH . E 4 HOH A 10 411 113 HOH HOH . E 4 HOH A 11 412 115 HOH HOH . E 4 HOH A 12 413 117 HOH HOH . E 4 HOH A 13 414 121 HOH HOH . E 4 HOH A 14 415 122 HOH HOH . E 4 HOH A 15 416 123 HOH HOH . E 4 HOH A 16 417 124 HOH HOH . E 4 HOH A 17 418 126 HOH HOH . E 4 HOH A 18 419 128 HOH HOH . E 4 HOH A 19 420 129 HOH HOH . E 4 HOH A 20 421 136 HOH HOH . E 4 HOH A 21 422 137 HOH HOH . E 4 HOH A 22 423 138 HOH HOH . E 4 HOH A 23 424 139 HOH HOH . E 4 HOH A 24 425 140 HOH HOH . E 4 HOH A 25 426 141 HOH HOH . E 4 HOH A 26 427 144 HOH HOH . E 4 HOH A 27 428 147 HOH HOH . E 4 HOH A 28 429 150 HOH HOH . E 4 HOH A 29 430 151 HOH HOH . E 4 HOH A 30 431 152 HOH HOH . E 4 HOH A 31 432 154 HOH HOH . E 4 HOH A 32 433 156 HOH HOH . E 4 HOH A 33 434 158 HOH HOH . E 4 HOH A 34 435 160 HOH HOH . E 4 HOH A 35 436 162 HOH HOH . E 4 HOH A 36 437 164 HOH HOH . E 4 HOH A 37 438 170 HOH HOH . E 4 HOH A 38 439 171 HOH HOH . E 4 HOH A 39 440 174 HOH HOH . E 4 HOH A 40 441 175 HOH HOH . E 4 HOH A 41 442 176 HOH HOH . E 4 HOH A 42 443 178 HOH HOH . E 4 HOH A 43 444 179 HOH HOH . E 4 HOH A 44 445 183 HOH HOH . E 4 HOH A 45 446 184 HOH HOH . E 4 HOH A 46 447 186 HOH HOH . E 4 HOH A 47 448 187 HOH HOH . E 4 HOH A 48 449 188 HOH HOH . E 4 HOH A 49 450 189 HOH HOH . E 4 HOH A 50 451 191 HOH HOH . E 4 HOH A 51 452 192 HOH HOH . E 4 HOH A 52 453 193 HOH HOH . E 4 HOH A 53 454 195 HOH HOH . E 4 HOH A 54 455 197 HOH HOH . E 4 HOH A 55 456 200 HOH HOH . E 4 HOH A 56 457 203 HOH HOH . E 4 HOH A 57 458 207 HOH HOH . E 4 HOH A 58 459 209 HOH HOH . E 4 HOH A 59 460 211 HOH HOH . E 4 HOH A 60 461 212 HOH HOH . E 4 HOH A 61 462 214 HOH HOH . E 4 HOH A 62 463 219 HOH HOH . E 4 HOH A 63 464 220 HOH HOH . E 4 HOH A 64 465 223 HOH HOH . E 4 HOH A 65 466 224 HOH HOH . E 4 HOH A 66 467 225 HOH HOH . E 4 HOH A 67 468 227 HOH HOH . E 4 HOH A 68 469 228 HOH HOH . E 4 HOH A 69 470 230 HOH HOH . E 4 HOH A 70 471 231 HOH HOH . E 4 HOH A 71 472 234 HOH HOH . E 4 HOH A 72 473 235 HOH HOH . E 4 HOH A 73 474 236 HOH HOH . E 4 HOH A 74 475 237 HOH HOH . E 4 HOH A 75 476 239 HOH HOH . E 4 HOH A 76 477 243 HOH HOH . E 4 HOH A 77 478 244 HOH HOH . E 4 HOH A 78 479 245 HOH HOH . E 4 HOH A 79 480 246 HOH HOH . E 4 HOH A 80 481 248 HOH HOH . E 4 HOH A 81 482 251 HOH HOH . E 4 HOH A 82 483 252 HOH HOH . E 4 HOH A 83 484 254 HOH HOH . E 4 HOH A 84 485 257 HOH HOH . E 4 HOH A 85 486 260 HOH HOH . E 4 HOH A 86 487 261 HOH HOH . E 4 HOH A 87 488 264 HOH HOH . E 4 HOH A 88 489 266 HOH HOH . E 4 HOH A 89 490 268 HOH HOH . E 4 HOH A 90 491 269 HOH HOH . E 4 HOH A 91 492 270 HOH HOH . E 4 HOH A 92 493 271 HOH HOH . E 4 HOH A 93 494 273 HOH HOH . E 4 HOH A 94 495 275 HOH HOH . E 4 HOH A 95 496 276 HOH HOH . E 4 HOH A 96 497 277 HOH HOH . E 4 HOH A 97 498 278 HOH HOH . E 4 HOH A 98 499 281 HOH HOH . E 4 HOH A 99 500 282 HOH HOH . E 4 HOH A 100 501 287 HOH HOH . E 4 HOH A 101 502 289 HOH HOH . E 4 HOH A 102 503 290 HOH HOH . E 4 HOH A 103 504 292 HOH HOH . E 4 HOH A 104 505 293 HOH HOH . E 4 HOH A 105 506 294 HOH HOH . E 4 HOH A 106 507 296 HOH HOH . E 4 HOH A 107 508 297 HOH HOH . E 4 HOH A 108 509 298 HOH HOH . E 4 HOH A 109 510 300 HOH HOH . E 4 HOH A 110 511 301 HOH HOH . E 4 HOH A 111 512 302 HOH HOH . E 4 HOH A 112 513 304 HOH HOH . E 4 HOH A 113 514 305 HOH HOH . E 4 HOH A 114 515 306 HOH HOH . E 4 HOH A 115 516 308 HOH HOH . E 4 HOH A 116 517 309 HOH HOH . E 4 HOH A 117 518 313 HOH HOH . E 4 HOH A 118 519 316 HOH HOH . E 4 HOH A 119 520 317 HOH HOH . E 4 HOH A 120 521 318 HOH HOH . E 4 HOH A 121 522 319 HOH HOH . E 4 HOH A 122 523 320 HOH HOH . E 4 HOH A 123 524 322 HOH HOH . E 4 HOH A 124 525 324 HOH HOH . E 4 HOH A 125 526 326 HOH HOH . E 4 HOH A 126 527 333 HOH HOH . E 4 HOH A 127 528 334 HOH HOH . E 4 HOH A 128 529 335 HOH HOH . E 4 HOH A 129 530 336 HOH HOH . E 4 HOH A 130 531 337 HOH HOH . E 4 HOH A 131 532 338 HOH HOH . E 4 HOH A 132 533 339 HOH HOH . E 4 HOH A 133 534 341 HOH HOH . E 4 HOH A 134 535 343 HOH HOH . E 4 HOH A 135 536 345 HOH HOH . E 4 HOH A 136 537 346 HOH HOH . E 4 HOH A 137 538 347 HOH HOH . E 4 HOH A 138 539 351 HOH HOH . E 4 HOH A 139 540 354 HOH HOH . E 4 HOH A 140 541 356 HOH HOH . E 4 HOH A 141 542 357 HOH HOH . E 4 HOH A 142 543 362 HOH HOH . E 4 HOH A 143 544 366 HOH HOH . E 4 HOH A 144 545 368 HOH HOH . F 4 HOH B 1 405 106 HOH HOH . F 4 HOH B 2 406 110 HOH HOH . F 4 HOH B 3 407 112 HOH HOH . F 4 HOH B 4 408 114 HOH HOH . F 4 HOH B 5 409 116 HOH HOH . F 4 HOH B 6 410 118 HOH HOH . F 4 HOH B 7 411 119 HOH HOH . F 4 HOH B 8 412 120 HOH HOH . F 4 HOH B 9 413 125 HOH HOH . F 4 HOH B 10 414 127 HOH HOH . F 4 HOH B 11 415 130 HOH HOH . F 4 HOH B 12 416 131 HOH HOH . F 4 HOH B 13 417 132 HOH HOH . F 4 HOH B 14 418 133 HOH HOH . F 4 HOH B 15 419 134 HOH HOH . F 4 HOH B 16 420 135 HOH HOH . F 4 HOH B 17 421 142 HOH HOH . F 4 HOH B 18 422 143 HOH HOH . F 4 HOH B 19 423 145 HOH HOH . F 4 HOH B 20 424 146 HOH HOH . F 4 HOH B 21 425 148 HOH HOH . F 4 HOH B 22 426 149 HOH HOH . F 4 HOH B 23 427 153 HOH HOH . F 4 HOH B 24 428 155 HOH HOH . F 4 HOH B 25 429 157 HOH HOH . F 4 HOH B 26 430 159 HOH HOH . F 4 HOH B 27 431 161 HOH HOH . F 4 HOH B 28 432 163 HOH HOH . F 4 HOH B 29 433 165 HOH HOH . F 4 HOH B 30 434 166 HOH HOH . F 4 HOH B 31 435 167 HOH HOH . F 4 HOH B 32 436 168 HOH HOH . F 4 HOH B 33 437 169 HOH HOH . F 4 HOH B 34 438 172 HOH HOH . F 4 HOH B 35 439 173 HOH HOH . F 4 HOH B 36 440 177 HOH HOH . F 4 HOH B 37 441 180 HOH HOH . F 4 HOH B 38 442 181 HOH HOH . F 4 HOH B 39 443 182 HOH HOH . F 4 HOH B 40 444 185 HOH HOH . F 4 HOH B 41 445 190 HOH HOH . F 4 HOH B 42 446 194 HOH HOH . F 4 HOH B 43 447 196 HOH HOH . F 4 HOH B 44 448 198 HOH HOH . F 4 HOH B 45 449 199 HOH HOH . F 4 HOH B 46 450 201 HOH HOH . F 4 HOH B 47 451 202 HOH HOH . F 4 HOH B 48 452 204 HOH HOH . F 4 HOH B 49 453 205 HOH HOH . F 4 HOH B 50 454 206 HOH HOH . F 4 HOH B 51 455 208 HOH HOH . F 4 HOH B 52 456 210 HOH HOH . F 4 HOH B 53 457 213 HOH HOH . F 4 HOH B 54 458 215 HOH HOH . F 4 HOH B 55 459 216 HOH HOH . F 4 HOH B 56 460 217 HOH HOH . F 4 HOH B 57 461 218 HOH HOH . F 4 HOH B 58 462 221 HOH HOH . F 4 HOH B 59 463 222 HOH HOH . F 4 HOH B 60 464 226 HOH HOH . F 4 HOH B 61 465 229 HOH HOH . F 4 HOH B 62 466 232 HOH HOH . F 4 HOH B 63 467 233 HOH HOH . F 4 HOH B 64 468 238 HOH HOH . F 4 HOH B 65 469 240 HOH HOH . F 4 HOH B 66 470 241 HOH HOH . F 4 HOH B 67 471 242 HOH HOH . F 4 HOH B 68 472 247 HOH HOH . F 4 HOH B 69 473 249 HOH HOH . F 4 HOH B 70 474 250 HOH HOH . F 4 HOH B 71 475 253 HOH HOH . F 4 HOH B 72 476 255 HOH HOH . F 4 HOH B 73 477 256 HOH HOH . F 4 HOH B 74 478 258 HOH HOH . F 4 HOH B 75 479 259 HOH HOH . F 4 HOH B 76 480 262 HOH HOH . F 4 HOH B 77 481 263 HOH HOH . F 4 HOH B 78 482 265 HOH HOH . F 4 HOH B 79 483 267 HOH HOH . F 4 HOH B 80 484 272 HOH HOH . F 4 HOH B 81 485 274 HOH HOH . F 4 HOH B 82 486 279 HOH HOH . F 4 HOH B 83 487 280 HOH HOH . F 4 HOH B 84 488 283 HOH HOH . F 4 HOH B 85 489 284 HOH HOH . F 4 HOH B 86 490 285 HOH HOH . F 4 HOH B 87 491 286 HOH HOH . F 4 HOH B 88 492 288 HOH HOH . F 4 HOH B 89 493 291 HOH HOH . F 4 HOH B 90 494 295 HOH HOH . F 4 HOH B 91 495 299 HOH HOH . F 4 HOH B 92 496 303 HOH HOH . F 4 HOH B 93 497 307 HOH HOH . F 4 HOH B 94 498 310 HOH HOH . F 4 HOH B 95 499 311 HOH HOH . F 4 HOH B 96 500 312 HOH HOH . F 4 HOH B 97 501 314 HOH HOH . F 4 HOH B 98 502 315 HOH HOH . F 4 HOH B 99 503 321 HOH HOH . F 4 HOH B 100 504 323 HOH HOH . F 4 HOH B 101 505 325 HOH HOH . F 4 HOH B 102 506 327 HOH HOH . F 4 HOH B 103 507 328 HOH HOH . F 4 HOH B 104 508 329 HOH HOH . F 4 HOH B 105 509 330 HOH HOH . F 4 HOH B 106 510 331 HOH HOH . F 4 HOH B 107 511 332 HOH HOH . F 4 HOH B 108 512 340 HOH HOH . F 4 HOH B 109 513 342 HOH HOH . F 4 HOH B 110 514 344 HOH HOH . F 4 HOH B 111 515 348 HOH HOH . F 4 HOH B 112 516 349 HOH HOH . F 4 HOH B 113 517 350 HOH HOH . F 4 HOH B 114 518 352 HOH HOH . F 4 HOH B 115 519 353 HOH HOH . F 4 HOH B 116 520 355 HOH HOH . F 4 HOH B 117 521 358 HOH HOH . F 4 HOH B 118 522 359 HOH HOH . F 4 HOH B 119 523 360 HOH HOH . F 4 HOH B 120 524 361 HOH HOH . F 4 HOH B 121 525 363 HOH HOH . F 4 HOH B 122 526 364 HOH HOH . F 4 HOH B 123 527 365 HOH HOH . F 4 HOH B 124 528 367 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 -4.842 55.551 17.729 1 57.78 ? C1 GOL 404 B 1 HETATM 2 O O1 GOL . . . D 3 -5.979 55.844 18.51 1 59.21 ? O1 GOL 404 B 1 HETATM 3 C C2 GOL . . . D 3 -4.747 56.252 16.357 1 57.44 ? C2 GOL 404 B 1 HETATM 4 O O2 GOL . . . D 3 -3.47 56.826 16.299 1 58.31 ? O2 GOL 404 B 1 HETATM 5 C C3 GOL . . . D 3 -5.761 57.345 16.03 1 55.76 ? C3 GOL 404 B 1 HETATM 6 O O3 GOL . . . D 3 -7.047 56.881 15.665 1 57.2 ? O3 GOL 404 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #