data_1RMD # _model_server_result.job_id Pufmfdncg7bf5hnCG7Z37w _model_server_result.datetime_utc '2024-12-13 11:24:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rmd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":119}' # _entry.id 1RMD # _exptl.entry_id 1RMD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1RMD _cell.length_a 57.58 _cell.length_b 57.58 _cell.length_c 98.43 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RMD _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 65.62 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 2 A CYS 2 1_555 B ZN ZN . A ZN 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc2 A ND1 HIS 6 A HIS 6 1_555 B ZN ZN . A ZN 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.866 ? metalc ? metalc3 A SG CYS 26 A CYS 26 1_555 C ZN ZN . A ZN 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc4 A SG CYS 29 A CYS 29 1_555 B ZN ZN . A ZN 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc5 A SG CYS 29 A CYS 29 1_555 C ZN ZN . A ZN 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc6 A ND1 HIS 31 A HIS 31 1_555 B ZN ZN . A ZN 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc7 A SG CYS 41 A CYS 41 1_555 D ZN ZN . A ZN 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc8 A ND1 HIS 43 A HIS 43 1_555 D ZN ZN . A ZN 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc9 A SG CYS 46 A CYS 46 1_555 C ZN ZN . A ZN 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc10 A SG CYS 49 A CYS 49 1_555 C ZN ZN . A ZN 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc11 A SG CYS 61 A CYS 61 1_555 D ZN ZN . A ZN 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc12 A SG CYS 64 A CYS 64 1_555 D ZN ZN . A ZN 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc13 A SG CYS 91 A CYS 91 1_555 E ZN ZN . A ZN 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc14 A SG CYS 96 A CYS 96 1_555 E ZN ZN . A ZN 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc15 A NE2 HIS 108 A HIS 108 1_555 E ZN ZN . A ZN 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc16 A NE2 HIS 112 A HIS 112 1_555 E ZN ZN . A ZN 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1RMD _atom_sites.fract_transf_matrix[1][1] 0.017367 _atom_sites.fract_transf_matrix[1][2] 0.010027 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020054 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01016 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 117 117 ZN ZN . C 2 ZN A 1 118 118 ZN ZN . D 2 ZN A 1 119 119 ZN ZN . E 2 ZN A 1 120 120 ZN ZN . F 3 HOH A 1 200 200 HOH HOH . F 3 HOH A 2 201 201 HOH HOH . F 3 HOH A 3 202 202 HOH HOH . F 3 HOH A 4 203 203 HOH HOH . F 3 HOH A 5 204 204 HOH HOH . F 3 HOH A 6 205 205 HOH HOH . F 3 HOH A 7 206 206 HOH HOH . F 3 HOH A 8 207 207 HOH HOH . F 3 HOH A 9 209 209 HOH HOH . F 3 HOH A 10 210 210 HOH HOH . F 3 HOH A 11 211 211 HOH HOH . F 3 HOH A 12 212 212 HOH HOH . F 3 HOH A 13 213 213 HOH HOH . F 3 HOH A 14 214 214 HOH HOH . F 3 HOH A 15 215 215 HOH HOH . F 3 HOH A 16 216 216 HOH HOH . F 3 HOH A 17 217 217 HOH HOH . F 3 HOH A 18 218 218 HOH HOH . F 3 HOH A 19 219 219 HOH HOH . F 3 HOH A 20 220 220 HOH HOH . F 3 HOH A 21 221 221 HOH HOH . F 3 HOH A 22 222 222 HOH HOH . F 3 HOH A 23 223 223 HOH HOH . F 3 HOH A 24 224 224 HOH HOH . F 3 HOH A 25 226 226 HOH HOH . F 3 HOH A 26 227 227 HOH HOH . F 3 HOH A 27 228 228 HOH HOH . F 3 HOH A 28 229 229 HOH HOH . F 3 HOH A 29 230 230 HOH HOH . F 3 HOH A 30 231 231 HOH HOH . F 3 HOH A 31 232 232 HOH HOH . F 3 HOH A 32 233 233 HOH HOH . F 3 HOH A 33 234 234 HOH HOH . F 3 HOH A 34 235 235 HOH HOH . F 3 HOH A 35 236 236 HOH HOH . F 3 HOH A 36 237 237 HOH HOH . F 3 HOH A 37 238 238 HOH HOH . F 3 HOH A 38 239 239 HOH HOH . F 3 HOH A 39 240 240 HOH HOH . F 3 HOH A 40 241 241 HOH HOH . F 3 HOH A 41 242 242 HOH HOH . F 3 HOH A 42 244 244 HOH HOH . F 3 HOH A 43 245 245 HOH HOH . F 3 HOH A 44 246 246 HOH HOH . F 3 HOH A 45 247 247 HOH HOH . F 3 HOH A 46 248 248 HOH HOH . F 3 HOH A 47 249 249 HOH HOH . F 3 HOH A 48 250 250 HOH HOH . F 3 HOH A 49 251 251 HOH HOH . F 3 HOH A 50 252 252 HOH HOH . F 3 HOH A 51 253 253 HOH HOH . F 3 HOH A 52 254 254 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x -0.311 _atom_site.Cartn_y 23.24 _atom_site.Cartn_z 29.837 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 23.33 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 119 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 121 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #