data_1RMS # _model_server_result.job_id TFAjwAqE7edltV-YaKnBqA _model_server_result.datetime_utc '2024-12-12 12:45:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rms # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":106}' # _entry.id 1RMS # _exptl.entry_id 1RMS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-3'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RMS _cell.length_a 47.03 _cell.length_b 62.8 _cell.length_c 37.95 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RMS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 11 A CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 7 A CYS 7 1_555 A SG CYS 102 A CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 3GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-3'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 3GP doub 1 n n P O2P 3GP sing 2 n n P O3P 3GP sing 3 n n P O3' 3GP sing 4 n n O2P HOP2 3GP sing 5 n n O3P HOP3 3GP sing 6 n n O5' C5' 3GP sing 7 n n O5' HO5' 3GP sing 8 n n C5' C4' 3GP sing 9 n n C5' "H5'1" 3GP sing 10 n n C5' "H5'2" 3GP sing 11 n n C4' O4' 3GP sing 12 n n C4' C3' 3GP sing 13 n n C4' H4' 3GP sing 14 n n O4' C1' 3GP sing 15 n n C3' O3' 3GP sing 16 n n C3' C2' 3GP sing 17 n n C3' H3' 3GP sing 18 n n C2' O2' 3GP sing 19 n n C2' C1' 3GP sing 20 n n C2' H2' 3GP sing 21 n n O2' HO2' 3GP sing 22 n n C1' N9 3GP sing 23 n n C1' H1' 3GP sing 24 n n N9 C8 3GP sing 25 n y N9 C4 3GP sing 26 n y C8 N7 3GP doub 27 n y C8 H8 3GP sing 28 n n N7 C5 3GP sing 29 n y C5 C6 3GP sing 30 n n C5 C4 3GP doub 31 n y C6 O6 3GP doub 32 n n C6 N1 3GP sing 33 n n N1 C2 3GP sing 34 n n N1 HN1 3GP sing 35 n n C2 N2 3GP sing 36 n n C2 N3 3GP doub 37 n n N2 HN21 3GP sing 38 n n N2 HN22 3GP sing 39 n n N3 C4 3GP sing 40 n n # _atom_sites.entry_id 1RMS _atom_sites.fract_transf_matrix[1][1] 0.021263 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015924 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026351 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3GP A 1 106 106 3GP 3GP . C 3 HOH A 1 107 107 HOH HOH . C 3 HOH A 2 108 108 HOH HOH . C 3 HOH A 3 109 109 HOH HOH . C 3 HOH A 4 110 110 HOH HOH . C 3 HOH A 5 111 111 HOH HOH . C 3 HOH A 6 112 112 HOH HOH . C 3 HOH A 7 113 113 HOH HOH . C 3 HOH A 8 114 114 HOH HOH . C 3 HOH A 9 115 115 HOH HOH . C 3 HOH A 10 116 116 HOH HOH . C 3 HOH A 11 117 117 HOH HOH . C 3 HOH A 12 118 118 HOH HOH . C 3 HOH A 13 119 119 HOH HOH . C 3 HOH A 14 120 120 HOH HOH . C 3 HOH A 15 121 121 HOH HOH . C 3 HOH A 16 122 122 HOH HOH . C 3 HOH A 17 123 123 HOH HOH . C 3 HOH A 18 124 124 HOH HOH . C 3 HOH A 19 125 125 HOH HOH . C 3 HOH A 20 126 126 HOH HOH . C 3 HOH A 21 127 127 HOH HOH . C 3 HOH A 22 128 128 HOH HOH . C 3 HOH A 23 129 129 HOH HOH . C 3 HOH A 24 130 130 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 3GP . . . B 2 31.817 41.298 30.439 1 34.56 ? P 3GP 106 A 1 HETATM 2 O O1P 3GP . . . B 2 32.232 42.161 31.552 1 33.53 ? O1P 3GP 106 A 1 HETATM 3 O O2P 3GP . . . B 2 32.241 41.488 29.034 1 36.11 ? O2P 3GP 106 A 1 HETATM 4 O O3P 3GP . . . B 2 30.414 40.79 30.408 1 39.19 ? O3P 3GP 106 A 1 HETATM 5 O O5' 3GP . . . B 2 30.56 39.042 33.955 1 38.91 ? O5' 3GP 106 A 1 HETATM 6 C C5' 3GP . . . B 2 30.617 38.78 32.572 1 34.37 ? C5' 3GP 106 A 1 HETATM 7 C C4' 3GP . . . B 2 31.997 38.142 32.358 1 32.41 ? C4' 3GP 106 A 1 HETATM 8 O O4' 3GP . . . B 2 31.852 36.748 32.283 1 28.93 ? O4' 3GP 106 A 1 HETATM 9 C C3' 3GP . . . B 2 31.664 38.791 31.04 1 31.76 ? C3' 3GP 106 A 1 HETATM 10 O O3' 3GP . . . B 2 32.572 39.9 30.643 1 38.25 ? O3' 3GP 106 A 1 HETATM 11 C C2' 3GP . . . B 2 31.756 37.623 30.144 1 31.28 ? C2' 3GP 106 A 1 HETATM 12 O O2' 3GP . . . B 2 32.961 37.37 29.407 1 39.37 ? O2' 3GP 106 A 1 HETATM 13 C C1' 3GP . . . B 2 31.311 36.485 30.994 1 24.63 ? C1' 3GP 106 A 1 HETATM 14 N N9 3GP . . . B 2 29.928 36.011 30.887 1 17.94 ? N9 3GP 106 A 1 HETATM 15 C C8 3GP . . . B 2 29.43 35.271 29.839 1 16.3 ? C8 3GP 106 A 1 HETATM 16 N N7 3GP . . . B 2 28.12 34.993 30.059 1 14.27 ? N7 3GP 106 A 1 HETATM 17 C C5 3GP . . . B 2 27.799 35.54 31.238 1 12.58 ? C5 3GP 106 A 1 HETATM 18 C C6 3GP . . . B 2 26.606 35.543 32.004 1 12.68 ? C6 3GP 106 A 1 HETATM 19 O O6 3GP . . . B 2 25.501 35.095 31.732 1 12.01 ? O6 3GP 106 A 1 HETATM 20 N N1 3GP . . . B 2 26.649 36.259 33.18 1 13.45 ? N1 3GP 106 A 1 HETATM 21 C C2 3GP . . . B 2 27.738 36.891 33.702 1 15.56 ? C2 3GP 106 A 1 HETATM 22 N N2 3GP . . . B 2 27.756 37.562 34.871 1 17.46 ? N2 3GP 106 A 1 HETATM 23 N N3 3GP . . . B 2 28.855 36.838 32.958 1 15.07 ? N3 3GP 106 A 1 HETATM 24 C C4 3GP . . . B 2 28.911 36.183 31.772 1 14.68 ? C4 3GP 106 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #