data_1RNC # _model_server_result.job_id 4ieDMEp8hIykgjWcNntXmg _model_server_result.datetime_utc '2024-11-05 05:01:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rnc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":161}' # _entry.id 1RNC # _exptl.entry_id 1RNC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.9 _cell.angle_gamma 90 _cell.entry_id 1RNC _cell.length_a 30.35 _cell.length_b 38.29 _cell.length_c 53.52 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RNC _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 84 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf2 A SG CYS 40 A CYS 40 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? disulf ? disulf3 A SG CYS 58 A CYS 58 1_555 A SG CYS 110 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 65 A CYS 65 1_555 A SG CYS 72 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 5GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 5GP doub 1 n n P O2P 5GP sing 2 n n P O3P 5GP sing 3 n n P O5' 5GP sing 4 n n O2P HOP2 5GP sing 5 n n O3P HOP3 5GP sing 6 n n O5' C5' 5GP sing 7 n n C5' C4' 5GP sing 8 n n C5' "H5'1" 5GP sing 9 n n C5' "H5'2" 5GP sing 10 n n C4' O4' 5GP sing 11 n n C4' C3' 5GP sing 12 n n C4' H4' 5GP sing 13 n n O4' C1' 5GP sing 14 n n C3' O3' 5GP sing 15 n n C3' C2' 5GP sing 16 n n C3' H3' 5GP sing 17 n n O3' HO3' 5GP sing 18 n n C2' O2' 5GP sing 19 n n C2' C1' 5GP sing 20 n n C2' H2' 5GP sing 21 n n O2' HO2' 5GP sing 22 n n C1' N9 5GP sing 23 n n C1' H1' 5GP sing 24 n n N9 C8 5GP sing 25 n y N9 C4 5GP sing 26 n y C8 N7 5GP doub 27 n y C8 H8 5GP sing 28 n n N7 C5 5GP sing 29 n y C5 C6 5GP sing 30 n n C5 C4 5GP doub 31 n y C6 O6 5GP doub 32 n n C6 N1 5GP sing 33 n n N1 C2 5GP sing 34 n n N1 HN1 5GP sing 35 n n C2 N2 5GP sing 36 n n C2 N3 5GP doub 37 n n N2 HN21 5GP sing 38 n n N2 HN22 5GP sing 39 n n N3 C4 5GP sing 40 n n # _atom_sites.entry_id 1RNC _atom_sites.fract_transf_matrix[1][1] 0.032949 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009386 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026116 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019428 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 151 151 SO4 SO4 . C 3 5GP A 1 161 161 5GP CPG . D 4 HOH A 1 162 146 HOH HOH . D 4 HOH A 2 163 147 HOH HOH . D 4 HOH A 3 164 148 HOH HOH . D 4 HOH A 4 165 149 HOH HOH . D 4 HOH A 5 166 150 HOH HOH . D 4 HOH A 6 167 151 HOH HOH . D 4 HOH A 7 168 152 HOH HOH . D 4 HOH A 8 169 153 HOH HOH . D 4 HOH A 9 170 154 HOH HOH . D 4 HOH A 10 171 155 HOH HOH . D 4 HOH A 11 172 156 HOH HOH . D 4 HOH A 12 173 157 HOH HOH . D 4 HOH A 13 174 158 HOH HOH . D 4 HOH A 14 175 159 HOH HOH . D 4 HOH A 15 176 160 HOH HOH . D 4 HOH A 16 177 161 HOH HOH . D 4 HOH A 17 178 162 HOH HOH . D 4 HOH A 18 179 163 HOH HOH . D 4 HOH A 19 180 164 HOH HOH . D 4 HOH A 20 181 165 HOH HOH . D 4 HOH A 21 182 166 HOH HOH . D 4 HOH A 22 183 167 HOH HOH . D 4 HOH A 23 184 168 HOH HOH . D 4 HOH A 24 185 169 HOH HOH . D 4 HOH A 25 186 170 HOH HOH . D 4 HOH A 26 187 171 HOH HOH . D 4 HOH A 27 188 172 HOH HOH . D 4 HOH A 28 189 173 HOH HOH . D 4 HOH A 29 190 174 HOH HOH . D 4 HOH A 30 191 175 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 5GP . . . C 3 37.053 6.957 7.819 0.25 0.44 ? P 5GP 161 A 1 HETATM 2 O O1P 5GP . . . C 3 38.278 6.828 8.725 0.25 0.5 ? O1P 5GP 161 A 1 HETATM 3 O O2P 5GP . . . C 3 36.628 7.223 6.379 0.25 0.48 ? O2P 5GP 161 A 1 HETATM 4 O O3P 5GP . . . C 3 36.18 5.607 8.12 0.25 0.41 ? O3P 5GP 161 A 1 HETATM 5 O O5' 5GP . . . C 3 36.139 7.97 8.671 0.54 0.45 ? O5' 5GP 161 A 1 HETATM 6 C C5' 5GP . . . C 3 36.603 8.382 9.962 0.54 0.31 ? C5' 5GP 161 A 1 HETATM 7 C C4' 5GP . . . C 3 36.943 9.807 9.682 0.54 0.43 ? C4' 5GP 161 A 1 HETATM 8 O O4' 5GP . . . C 3 35.715 10.564 9.368 0.54 0.19 ? O4' 5GP 161 A 1 HETATM 9 C C3' 5GP . . . C 3 37.754 10.564 10.711 0.54 0.26 ? C3' 5GP 161 A 1 HETATM 10 O O3' 5GP . . . C 3 39.132 10.416 10.323 0.54 0.61 ? O3' 5GP 161 A 1 HETATM 11 C C2' 5GP . . . C 3 37.379 12.028 10.339 0.54 0.5 ? C2' 5GP 161 A 1 HETATM 12 O O2' 5GP . . . C 3 38.413 12.449 9.453 0.54 0.37 ? O2' 5GP 161 A 1 HETATM 13 C C1' 5GP . . . C 3 36.061 11.844 9.63 0.54 0.15 ? C1' 5GP 161 A 1 HETATM 14 N N9 5GP . . . C 3 34.822 12.409 10.236 0.99 0.2 ? N9 5GP 161 A 1 HETATM 15 C C8 5GP . . . C 3 34.391 12.411 11.522 0.99 0.3 ? C8 5GP 161 A 1 HETATM 16 N N7 5GP . . . C 3 33.253 13.024 11.703 0.99 0.2 ? N7 5GP 161 A 1 HETATM 17 C C5 5GP . . . C 3 32.907 13.435 10.45 0.99 0.14 ? C5 5GP 161 A 1 HETATM 18 C C6 5GP . . . C 3 31.796 14.147 10.027 0.99 0.12 ? C6 5GP 161 A 1 HETATM 19 O O6 5GP . . . C 3 30.853 14.6 10.662 0.99 0.11 ? O6 5GP 161 A 1 HETATM 20 N N1 5GP . . . C 3 31.743 14.418 8.626 0.99 0.2 ? N1 5GP 161 A 1 HETATM 21 C C2 5GP . . . C 3 32.792 13.98 7.847 0.99 0.25 ? C2 5GP 161 A 1 HETATM 22 N N2 5GP . . . C 3 32.748 14.243 6.508 0.99 0.25 ? N2 5GP 161 A 1 HETATM 23 N N3 5GP . . . C 3 33.845 13.315 8.234 0.99 0.22 ? N3 5GP 161 A 1 HETATM 24 C C4 5GP . . . C 3 33.888 13.049 9.54 0.99 0.2 ? C4 5GP 161 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #