data_1RND
#
_model_server_result.job_id            stgUzCmWiTaXC6XBdi5K1g 
_model_server_result.datetime_utc      '2024-11-16 09:48:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1rnd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":126}' 
#
_entry.id    1RND 
#
_exptl.entry_id    1RND 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.9 
_cell.angle_gamma         90 
_cell.entry_id            1RND 
_cell.length_a            30.34 
_cell.length_b            38.19 
_cell.length_c            53.37 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1RND 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 84 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
disulf ? disulf2 A SG CYS 40 A CYS 40 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 A SG CYS 58 A CYS 58 1_555 A SG CYS 110 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
disulf ? disulf4 A SG CYS 65 A CYS 65 1_555 A SG CYS 72 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                DGP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P OP1 DGP doub 83 n n 
P OP2 DGP sing 84 n n 
P OP3 DGP sing 85 n n 
P O5' DGP sing 86 n n 
OP2 HOP2 DGP sing 87 n n 
OP3 HOP3 DGP sing 88 n n 
O5' C5' DGP sing 89 n n 
C5' C4' DGP sing 90 n n 
C5' H5' DGP sing 91 n n 
C5' "H5''" DGP sing 92 n n 
C4' O4' DGP sing 93 n n 
C4' C3' DGP sing 94 n n 
C4' H4' DGP sing 95 n n 
O4' C1' DGP sing 96 n n 
C3' O3' DGP sing 97 n n 
C3' C2' DGP sing 98 n n 
C3' H3' DGP sing 99 n n 
O3' HO3' DGP sing 100 n n 
C2' C1' DGP sing 101 n n 
C2' H2' DGP sing 102 n n 
C2' "H2''" DGP sing 103 n n 
C1' N9 DGP sing 104 n n 
C1' H1' DGP sing 105 n n 
N9 C8 DGP sing 106 n y 
N9 C4 DGP sing 107 n y 
C8 N7 DGP doub 108 n y 
C8 H8 DGP sing 109 n n 
N7 C5 DGP sing 110 n y 
C5 C6 DGP sing 111 n n 
C5 C4 DGP doub 112 n y 
C6 O6 DGP doub 113 n n 
C6 N1 DGP sing 114 n n 
N1 C2 DGP sing 115 n n 
N1 HN1 DGP sing 116 n n 
C2 N2 DGP sing 117 n n 
C2 N3 DGP doub 118 n n 
N2 HN21 DGP sing 119 n n 
N2 HN22 DGP sing 120 n n 
N3 C4 DGP sing 121 n n 
#
_atom_sites.entry_id                     1RND 
_atom_sites.fract_transf_matrix[1][1]    0.03296 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.009389 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.026185 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019482 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 125 125 SO4 SO4 . 
C 3 DGP A 1 126 126 DGP DCG . 
D 4 HOH A 1 127 127 HOH HOH . 
D 4 HOH A 2 128 128 HOH HOH . 
D 4 HOH A 3 129 129 HOH HOH . 
D 4 HOH A 4 130 130 HOH HOH . 
D 4 HOH A 5 131 131 HOH HOH . 
D 4 HOH A 6 132 132 HOH HOH . 
D 4 HOH A 7 133 133 HOH HOH . 
D 4 HOH A 8 134 134 HOH HOH . 
D 4 HOH A 9 135 135 HOH HOH . 
D 4 HOH A 10 136 136 HOH HOH . 
D 4 HOH A 11 137 137 HOH HOH . 
D 4 HOH A 12 138 138 HOH HOH . 
D 4 HOH A 13 139 139 HOH HOH . 
D 4 HOH A 14 140 140 HOH HOH . 
D 4 HOH A 15 141 141 HOH HOH . 
D 4 HOH A 16 142 142 HOH HOH . 
D 4 HOH A 17 143 143 HOH HOH . 
D 4 HOH A 18 144 144 HOH HOH . 
D 4 HOH A 19 145 145 HOH HOH . 
D 4 HOH A 20 146 146 HOH HOH . 
D 4 HOH A 21 147 147 HOH HOH . 
D 4 HOH A 22 148 148 HOH HOH . 
D 4 HOH A 23 149 149 HOH HOH . 
D 4 HOH A 24 150 150 HOH HOH . 
D 4 HOH A 25 151 151 HOH HOH . 
D 4 HOH A 26 152 152 HOH HOH . 
D 4 HOH A 27 153 153 HOH HOH . 
D 4 HOH A 28 154 154 HOH HOH . 
D 4 HOH A 29 155 155 HOH HOH . 
D 4 HOH A 30 156 156 HOH HOH . 
D 4 HOH A 31 157 157 HOH HOH . 
D 4 HOH A 32 158 158 HOH HOH . 
D 4 HOH A 33 159 159 HOH HOH . 
D 4 HOH A 34 160 160 HOH HOH . 
D 4 HOH A 35 161 161 HOH HOH . 
D 4 HOH A 36 162 162 HOH HOH . 
D 4 HOH A 37 163 163 HOH HOH . 
D 4 HOH A 38 164 164 HOH HOH . 
D 4 HOH A 39 165 165 HOH HOH . 
D 4 HOH A 40 166 166 HOH HOH . 
D 4 HOH A 41 167 167 HOH HOH . 
D 4 HOH A 42 168 168 HOH HOH . 
D 4 HOH A 43 169 169 HOH HOH . 
D 4 HOH A 44 170 170 HOH HOH . 
D 4 HOH A 45 171 171 HOH HOH . 
D 4 HOH A 46 172 172 HOH HOH . 
D 4 HOH A 47 173 173 HOH HOH . 
D 4 HOH A 48 174 174 HOH HOH . 
D 4 HOH A 49 175 175 HOH HOH . 
D 4 HOH A 50 176 176 HOH HOH . 
D 4 HOH A 51 178 178 HOH HOH . 
D 4 HOH A 52 179 179 HOH HOH . 
D 4 HOH A 53 180 180 HOH HOH . 
D 4 HOH A 54 181 181 HOH HOH . 
D 4 HOH A 55 182 182 HOH HOH . 
D 4 HOH A 56 183 183 HOH HOH . 
D 4 HOH A 57 184 184 HOH HOH . 
D 4 HOH A 58 185 185 HOH HOH . 
D 4 HOH A 59 186 186 HOH HOH . 
D 4 HOH A 60 187 187 HOH HOH . 
D 4 HOH A 61 188 188 HOH HOH . 
D 4 HOH A 62 189 189 HOH HOH . 
D 4 HOH A 63 190 190 HOH HOH . 
D 4 HOH A 64 191 191 HOH HOH . 
D 4 HOH A 65 193 193 HOH HOH . 
D 4 HOH A 66 194 194 HOH HOH . 
D 4 HOH A 67 195 195 HOH HOH . 
D 4 HOH A 68 196 196 HOH HOH . 
D 4 HOH A 69 197 197 HOH HOH . 
D 4 HOH A 70 198 198 HOH HOH . 
D 4 HOH A 71 199 199 HOH HOH . 
D 4 HOH A 72 200 200 HOH HOH . 
D 4 HOH A 73 201 201 HOH HOH . 
D 4 HOH A 74 202 202 HOH HOH . 
D 4 HOH A 75 203 203 HOH HOH . 
D 4 HOH A 76 204 204 HOH HOH . 
D 4 HOH A 77 205 205 HOH HOH . 
D 4 HOH A 78 206 206 HOH HOH . 
D 4 HOH A 79 207 207 HOH HOH . 
D 4 HOH A 80 208 208 HOH HOH . 
D 4 HOH A 81 209 209 HOH HOH . 
D 4 HOH A 82 210 210 HOH HOH . 
D 4 HOH A 83 211 211 HOH HOH . 
D 4 HOH A 84 212 212 HOH HOH . 
D 4 HOH A 85 213 213 HOH HOH . 
D 4 HOH A 86 214 214 HOH HOH . 
D 4 HOH A 87 215 215 HOH HOH . 
D 4 HOH A 88 216 216 HOH HOH . 
D 4 HOH A 89 217 217 HOH HOH . 
D 4 HOH A 90 218 218 HOH HOH . 
D 4 HOH A 91 219 219 HOH HOH . 
D 4 HOH A 92 220 220 HOH HOH . 
D 4 HOH A 93 221 221 HOH HOH . 
D 4 HOH A 94 222 222 HOH HOH . 
D 4 HOH A 95 223 223 HOH HOH . 
D 4 HOH A 96 224 224 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P DGP . . . C 3 38.967 7.233 11.661 0.51 0.45 ? P DGP 126 A 1 
HETATM 2 O OP1 DGP . . . C 3 38.478 8.053 12.867 0.51 0.47 ? OP1 DGP 126 A 1 
HETATM 3 O OP2 DGP . . . C 3 40.189 7.052 10.727 0.51 0.68 ? OP2 DGP 126 A 1 
HETATM 4 O OP3 DGP . . . C 3 38.71 5.71 12.153 0.51 0.68 ? OP3 DGP 126 A 1 
HETATM 5 O O5' DGP . . . C 3 37.852 7.375 10.508 0.72 0.76 ? O5' DGP 126 A 1 
HETATM 6 C C5' DGP . . . C 3 37.089 8.5 10.183 0.72 0.56 ? C5' DGP 126 A 1 
HETATM 7 C C4' DGP . . . C 3 37.273 9.869 9.693 0.72 0.45 ? C4' DGP 126 A 1 
HETATM 8 O O4' DGP . . . C 3 36.043 10.538 9.329 0.72 0.26 ? O4' DGP 126 A 1 
HETATM 9 C C3' DGP . . . C 3 38.159 10.958 10.269 0.72 0.36 ? C3' DGP 126 A 1 
HETATM 10 O O3' DGP . . . C 3 39.004 11.426 9.216 0.72 0.39 ? O3' DGP 126 A 1 
HETATM 11 C C2' DGP . . . C 3 37.296 12.183 10.464 0.72 0.24 ? C2' DGP 126 A 1 
HETATM 12 C C1' DGP . . . C 3 36.087 11.889 9.642 0.72 0.14 ? C1' DGP 126 A 1 
HETATM 13 N N9 DGP . . . C 3 34.812 12.439 10.151 0.94 0.14 ? N9 DGP 126 A 1 
HETATM 14 C C8 DGP . . . C 3 34.424 12.474 11.489 0.94 0.18 ? C8 DGP 126 A 1 
HETATM 15 N N7 DGP . . . C 3 33.291 13.077 11.609 0.94 0.14 ? N7 DGP 126 A 1 
HETATM 16 C C5 DGP . . . C 3 32.917 13.484 10.386 0.94 0.11 ? C5 DGP 126 A 1 
HETATM 17 C C6 DGP . . . C 3 31.805 14.193 9.953 0.94 0.11 ? C6 DGP 126 A 1 
HETATM 18 O O6 DGP . . . C 3 30.919 14.587 10.681 0.94 0.13 ? O6 DGP 126 A 1 
HETATM 19 N N1 DGP . . . C 3 31.783 14.453 8.553 0.94 0.13 ? N1 DGP 126 A 1 
HETATM 20 C C2 DGP . . . C 3 32.788 14.039 7.757 0.94 0.16 ? C2 DGP 126 A 1 
HETATM 21 N N2 DGP . . . C 3 32.699 14.303 6.455 0.94 0.17 ? N2 DGP 126 A 1 
HETATM 22 N N3 DGP . . . C 3 33.862 13.351 8.139 0.94 0.18 ? N3 DGP 126 A 1 
HETATM 23 C C4 DGP . . . C 3 33.847 13.096 9.464 0.94 0.13 ? C4 DGP 126 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           23 
#