data_1RNE # _model_server_result.job_id Tos2xUWLIkWvwo-Dsn1OsQ _model_server_result.datetime_utc '2024-10-19 20:11:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rne # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":345}' # _entry.id 1RNE # _exptl.entry_id 1RNE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RNE _cell.length_a 90.9 _cell.length_b 90.9 _cell.length_c 109.4 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RNE _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 109.4 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 51 A CYS 45 1_555 A SG CYS 58 A CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? disulf ? disulf2 A SG CYS 217 A CYS 206 1_555 A SG CYS 221 A CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 259 A CYS 249 1_555 A SG CYS 296 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? covale ? covale1 A ND2 ASN 75 A ASN 67 1_555 B C1 NAG . A NAG 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.296 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1RNE _atom_sites.fract_transf_matrix[1][1] 0.011001 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011001 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009141 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 345 345 NAG NAG . C 3 C60 A 1 350 350 C60 C60 . D 4 HOH A 1 351 351 HOH HOH . D 4 HOH A 2 352 352 HOH HOH . D 4 HOH A 3 353 353 HOH HOH . D 4 HOH A 4 354 354 HOH HOH . D 4 HOH A 5 355 355 HOH HOH . D 4 HOH A 6 356 356 HOH HOH . D 4 HOH A 7 357 357 HOH HOH . D 4 HOH A 8 358 358 HOH HOH . D 4 HOH A 9 359 359 HOH HOH . D 4 HOH A 10 360 360 HOH HOH . D 4 HOH A 11 361 361 HOH HOH . D 4 HOH A 12 362 362 HOH HOH . D 4 HOH A 13 363 363 HOH HOH . D 4 HOH A 14 364 364 HOH HOH . D 4 HOH A 15 365 365 HOH HOH . D 4 HOH A 16 366 366 HOH HOH . D 4 HOH A 17 367 367 HOH HOH . D 4 HOH A 18 368 368 HOH HOH . D 4 HOH A 19 369 369 HOH HOH . D 4 HOH A 20 370 370 HOH HOH . D 4 HOH A 21 371 371 HOH HOH . D 4 HOH A 22 372 372 HOH HOH . D 4 HOH A 23 373 373 HOH HOH . D 4 HOH A 24 374 374 HOH HOH . D 4 HOH A 25 375 375 HOH HOH . D 4 HOH A 26 376 376 HOH HOH . D 4 HOH A 27 377 377 HOH HOH . D 4 HOH A 28 378 378 HOH HOH . D 4 HOH A 29 379 379 HOH HOH . D 4 HOH A 30 380 380 HOH HOH . D 4 HOH A 31 381 381 HOH HOH . D 4 HOH A 32 382 382 HOH HOH . D 4 HOH A 33 383 383 HOH HOH . D 4 HOH A 34 384 384 HOH HOH . D 4 HOH A 35 385 385 HOH HOH . D 4 HOH A 36 386 386 HOH HOH . D 4 HOH A 37 387 387 HOH HOH . D 4 HOH A 38 388 388 HOH HOH . D 4 HOH A 39 389 389 HOH HOH . D 4 HOH A 40 390 390 HOH HOH . D 4 HOH A 41 391 391 HOH HOH . D 4 HOH A 42 392 392 HOH HOH . D 4 HOH A 43 393 393 HOH HOH . D 4 HOH A 44 394 394 HOH HOH . D 4 HOH A 45 395 395 HOH HOH . D 4 HOH A 46 396 396 HOH HOH . D 4 HOH A 47 397 397 HOH HOH . D 4 HOH A 48 398 398 HOH HOH . D 4 HOH A 49 399 399 HOH HOH . D 4 HOH A 50 400 400 HOH HOH . D 4 HOH A 51 401 401 HOH HOH . D 4 HOH A 52 402 402 HOH HOH . D 4 HOH A 53 403 403 HOH HOH . D 4 HOH A 54 404 404 HOH HOH . D 4 HOH A 55 405 405 HOH HOH . D 4 HOH A 56 406 406 HOH HOH . D 4 HOH A 57 407 407 HOH HOH . D 4 HOH A 58 408 408 HOH HOH . D 4 HOH A 59 409 409 HOH HOH . D 4 HOH A 60 410 410 HOH HOH . D 4 HOH A 61 411 411 HOH HOH . D 4 HOH A 62 412 412 HOH HOH . D 4 HOH A 63 413 413 HOH HOH . D 4 HOH A 64 414 414 HOH HOH . D 4 HOH A 65 415 415 HOH HOH . D 4 HOH A 66 416 416 HOH HOH . D 4 HOH A 67 417 417 HOH HOH . D 4 HOH A 68 418 418 HOH HOH . D 4 HOH A 69 419 419 HOH HOH . D 4 HOH A 70 420 420 HOH HOH . D 4 HOH A 71 421 421 HOH HOH . D 4 HOH A 72 422 422 HOH HOH . D 4 HOH A 73 423 423 HOH HOH . D 4 HOH A 74 424 424 HOH HOH . D 4 HOH A 75 425 425 HOH HOH . D 4 HOH A 76 426 426 HOH HOH . D 4 HOH A 77 427 427 HOH HOH . D 4 HOH A 78 428 428 HOH HOH . D 4 HOH A 79 429 429 HOH HOH . D 4 HOH A 80 430 430 HOH HOH . D 4 HOH A 81 431 431 HOH HOH . D 4 HOH A 82 432 432 HOH HOH . D 4 HOH A 83 433 433 HOH HOH . D 4 HOH A 84 434 434 HOH HOH . D 4 HOH A 85 435 435 HOH HOH . D 4 HOH A 86 436 436 HOH HOH . D 4 HOH A 87 437 437 HOH HOH . D 4 HOH A 88 438 438 HOH HOH . D 4 HOH A 89 439 439 HOH HOH . D 4 HOH A 90 440 440 HOH HOH . D 4 HOH A 91 441 441 HOH HOH . D 4 HOH A 92 442 442 HOH HOH . D 4 HOH A 93 443 443 HOH HOH . D 4 HOH A 94 444 444 HOH HOH . D 4 HOH A 95 445 445 HOH HOH . D 4 HOH A 96 446 446 HOH HOH . D 4 HOH A 97 447 447 HOH HOH . D 4 HOH A 98 448 448 HOH HOH . D 4 HOH A 99 449 449 HOH HOH . D 4 HOH A 100 450 450 HOH HOH . D 4 HOH A 101 451 451 HOH HOH . D 4 HOH A 102 452 452 HOH HOH . D 4 HOH A 103 453 453 HOH HOH . D 4 HOH A 104 454 454 HOH HOH . D 4 HOH A 105 455 455 HOH HOH . D 4 HOH A 106 456 456 HOH HOH . D 4 HOH A 107 457 457 HOH HOH . D 4 HOH A 108 458 458 HOH HOH . D 4 HOH A 109 459 459 HOH HOH . D 4 HOH A 110 460 460 HOH HOH . D 4 HOH A 111 461 461 HOH HOH . D 4 HOH A 112 462 462 HOH HOH . D 4 HOH A 113 463 463 HOH HOH . D 4 HOH A 114 464 464 HOH HOH . D 4 HOH A 115 465 465 HOH HOH . D 4 HOH A 116 466 466 HOH HOH . D 4 HOH A 117 467 467 HOH HOH . D 4 HOH A 118 468 468 HOH HOH . D 4 HOH A 119 469 469 HOH HOH . D 4 HOH A 120 470 470 HOH HOH . D 4 HOH A 121 471 471 HOH HOH . D 4 HOH A 122 472 472 HOH HOH . D 4 HOH A 123 473 473 HOH HOH . D 4 HOH A 124 474 474 HOH HOH . D 4 HOH A 125 475 475 HOH HOH . D 4 HOH A 126 476 476 HOH HOH . D 4 HOH A 127 477 477 HOH HOH . D 4 HOH A 128 478 478 HOH HOH . D 4 HOH A 129 479 479 HOH HOH . D 4 HOH A 130 480 480 HOH HOH . D 4 HOH A 131 481 481 HOH HOH . D 4 HOH A 132 482 482 HOH HOH . D 4 HOH A 133 483 483 HOH HOH . D 4 HOH A 134 484 484 HOH HOH . D 4 HOH A 135 485 485 HOH HOH . D 4 HOH A 136 486 486 HOH HOH . D 4 HOH A 137 487 487 HOH HOH . D 4 HOH A 138 488 488 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 29.69 8.429 84.23 0.5 73.08 ? C1 NAG 345 A 1 HETATM 2 C C2 NAG . . . B 2 30.796 7.774 85.058 0.5 33.98 ? C2 NAG 345 A 1 HETATM 3 C C3 NAG . . . B 2 30.3 6.381 85.324 0.5 74.3 ? C3 NAG 345 A 1 HETATM 4 C C4 NAG . . . B 2 28.938 6.458 86.017 0.5 51.54 ? C4 NAG 345 A 1 HETATM 5 C C5 NAG . . . B 2 27.909 7.502 85.13 0.5 63.96 ? C5 NAG 345 A 1 HETATM 6 C C6 NAG . . . B 2 26.584 7.754 85.803 0.5 79.85 ? C6 NAG 345 A 1 HETATM 7 C C7 NAG . . . B 2 33.141 8.083 84.872 0.5 68.32 ? C7 NAG 345 A 1 HETATM 8 C C8 NAG . . . B 2 34.45 7.952 84.098 0.5 99.99 ? C8 NAG 345 A 1 HETATM 9 N N2 NAG . . . B 2 32.031 7.626 84.303 0.5 38.76 ? N2 NAG 345 A 1 HETATM 10 O O3 NAG . . . B 2 31.247 5.716 86.129 0.5 99.99 ? O3 NAG 345 A 1 HETATM 11 O O4 NAG . . . B 2 28.352 5.175 86.133 0.5 99.99 ? O4 NAG 345 A 1 HETATM 12 O O5 NAG . . . B 2 28.577 8.724 85.048 0.5 45.24 ? O5 NAG 345 A 1 HETATM 13 O O6 NAG . . . B 2 25.684 6.756 85.374 0.5 99.99 ? O6 NAG 345 A 1 HETATM 14 O O7 NAG . . . B 2 33.102 8.631 85.978 0.5 99.99 ? O7 NAG 345 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 14 #