data_1RNJ # _model_server_result.job_id ikfSLzhL2r3jVyIqzzMAAA _model_server_result.datetime_utc '2024-11-25 09:40:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rnj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":802}' # _entry.id 1RNJ # _exptl.entry_id 1RNJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1RNJ _cell.length_a 74.9 _cell.length_b 74.9 _cell.length_c 99.643 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RNJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 74.9 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 37.45 64.865303 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C O1B DUP . A DUP 777 1_555 B MG MG . A MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.885 ? metalc ? metalc2 C O1A DUP . A DUP 777 1_555 B MG MG . A MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc3 C O2G DUP . A DUP 777 1_555 B MG MG . A MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc4 B MG MG . A MG 999 1_555 F O HOH . A HOH 1110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc5 B MG MG . A MG 999 1_555 F O HOH . A HOH 1111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc6 B MG MG . A MG 999 1_555 F O HOH . A HOH 1135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.811 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 379 n n C C2 TRS sing 380 n n C C3 TRS sing 381 n n C N TRS sing 382 n n C1 O1 TRS sing 383 n n C1 H11 TRS sing 384 n n C1 H12 TRS sing 385 n n C2 O2 TRS sing 386 n n C2 H21 TRS sing 387 n n C2 H22 TRS sing 388 n n C3 O3 TRS sing 389 n n C3 H31 TRS sing 390 n n C3 H32 TRS sing 391 n n N HN1 TRS sing 392 n n N HN2 TRS sing 393 n n N HN3 TRS sing 394 n n O1 HO1 TRS sing 395 n n O2 HO2 TRS sing 396 n n O3 HO3 TRS sing 397 n n # _atom_sites.entry_id 1RNJ _atom_sites.fract_transf_matrix[1][1] 0.013351 _atom_sites.fract_transf_matrix[1][2] 0.007708 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015417 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010036 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 999 999 MG MG . C 3 DUP A 1 777 777 DUP UNP . D 4 TRS A 1 801 1 TRS TRS . E 4 TRS A 1 802 2 TRS TRS . F 5 HOH A 1 1000 1 HOH HOH . F 5 HOH A 2 1001 2 HOH HOH . F 5 HOH A 3 1002 3 HOH HOH . F 5 HOH A 4 1003 4 HOH HOH . F 5 HOH A 5 1004 5 HOH HOH . F 5 HOH A 6 1005 6 HOH HOH . F 5 HOH A 7 1006 7 HOH HOH . F 5 HOH A 8 1007 8 HOH HOH . F 5 HOH A 9 1008 9 HOH HOH . F 5 HOH A 10 1009 10 HOH HOH . F 5 HOH A 11 1010 11 HOH HOH . F 5 HOH A 12 1011 12 HOH HOH . F 5 HOH A 13 1012 13 HOH HOH . F 5 HOH A 14 1013 14 HOH HOH . F 5 HOH A 15 1014 15 HOH HOH . F 5 HOH A 16 1015 16 HOH HOH . F 5 HOH A 17 1016 17 HOH HOH . F 5 HOH A 18 1017 18 HOH HOH . F 5 HOH A 19 1018 19 HOH HOH . F 5 HOH A 20 1019 20 HOH HOH . F 5 HOH A 21 1020 21 HOH HOH . F 5 HOH A 22 1021 22 HOH HOH . F 5 HOH A 23 1022 23 HOH HOH . F 5 HOH A 24 1023 24 HOH HOH . F 5 HOH A 25 1024 25 HOH HOH . F 5 HOH A 26 1025 26 HOH HOH . F 5 HOH A 27 1026 27 HOH HOH . F 5 HOH A 28 1027 28 HOH HOH . F 5 HOH A 29 1028 29 HOH HOH . F 5 HOH A 30 1029 30 HOH HOH . F 5 HOH A 31 1030 31 HOH HOH . F 5 HOH A 32 1031 32 HOH HOH . F 5 HOH A 33 1032 33 HOH HOH . F 5 HOH A 34 1033 34 HOH HOH . F 5 HOH A 35 1034 35 HOH HOH . F 5 HOH A 36 1035 36 HOH HOH . F 5 HOH A 37 1036 37 HOH HOH . F 5 HOH A 38 1037 38 HOH HOH . F 5 HOH A 39 1038 39 HOH HOH . F 5 HOH A 40 1039 40 HOH HOH . F 5 HOH A 41 1040 41 HOH HOH . F 5 HOH A 42 1041 42 HOH HOH . F 5 HOH A 43 1042 43 HOH HOH . F 5 HOH A 44 1043 44 HOH HOH . F 5 HOH A 45 1044 45 HOH HOH . F 5 HOH A 46 1045 46 HOH HOH . F 5 HOH A 47 1046 47 HOH HOH . F 5 HOH A 48 1047 48 HOH HOH . F 5 HOH A 49 1048 49 HOH HOH . F 5 HOH A 50 1049 50 HOH HOH . F 5 HOH A 51 1050 51 HOH HOH . F 5 HOH A 52 1051 52 HOH HOH . F 5 HOH A 53 1052 53 HOH HOH . F 5 HOH A 54 1053 54 HOH HOH . F 5 HOH A 55 1054 55 HOH HOH . F 5 HOH A 56 1055 56 HOH HOH . F 5 HOH A 57 1056 57 HOH HOH . F 5 HOH A 58 1057 58 HOH HOH . F 5 HOH A 59 1058 59 HOH HOH . F 5 HOH A 60 1059 60 HOH HOH . F 5 HOH A 61 1060 61 HOH HOH . F 5 HOH A 62 1061 62 HOH HOH . F 5 HOH A 63 1062 63 HOH HOH . F 5 HOH A 64 1063 64 HOH HOH . F 5 HOH A 65 1064 65 HOH HOH . F 5 HOH A 66 1065 66 HOH HOH . F 5 HOH A 67 1066 67 HOH HOH . F 5 HOH A 68 1067 68 HOH HOH . F 5 HOH A 69 1068 69 HOH HOH . F 5 HOH A 70 1069 70 HOH HOH . F 5 HOH A 71 1070 71 HOH HOH . F 5 HOH A 72 1071 72 HOH HOH . F 5 HOH A 73 1072 73 HOH HOH . F 5 HOH A 74 1073 74 HOH HOH . F 5 HOH A 75 1074 75 HOH HOH . F 5 HOH A 76 1075 76 HOH HOH . F 5 HOH A 77 1076 77 HOH HOH . F 5 HOH A 78 1077 78 HOH HOH . F 5 HOH A 79 1078 79 HOH HOH . F 5 HOH A 80 1079 80 HOH HOH . F 5 HOH A 81 1080 81 HOH HOH . F 5 HOH A 82 1081 82 HOH HOH . F 5 HOH A 83 1082 83 HOH HOH . F 5 HOH A 84 1083 84 HOH HOH . F 5 HOH A 85 1084 85 HOH HOH . F 5 HOH A 86 1085 86 HOH HOH . F 5 HOH A 87 1086 87 HOH HOH . F 5 HOH A 88 1087 88 HOH HOH . F 5 HOH A 89 1088 89 HOH HOH . F 5 HOH A 90 1089 90 HOH HOH . F 5 HOH A 91 1090 91 HOH HOH . F 5 HOH A 92 1091 92 HOH HOH . F 5 HOH A 93 1092 93 HOH HOH . F 5 HOH A 94 1093 94 HOH HOH . F 5 HOH A 95 1094 95 HOH HOH . F 5 HOH A 96 1095 96 HOH HOH . F 5 HOH A 97 1096 97 HOH HOH . F 5 HOH A 98 1097 98 HOH HOH . F 5 HOH A 99 1098 99 HOH HOH . F 5 HOH A 100 1099 100 HOH HOH . F 5 HOH A 101 1100 101 HOH HOH . F 5 HOH A 102 1101 102 HOH HOH . F 5 HOH A 103 1102 103 HOH HOH . F 5 HOH A 104 1103 104 HOH HOH . F 5 HOH A 105 1104 105 HOH HOH . F 5 HOH A 106 1105 106 HOH HOH . F 5 HOH A 107 1106 107 HOH HOH . F 5 HOH A 108 1107 108 HOH HOH . F 5 HOH A 109 1108 109 HOH HOH . F 5 HOH A 110 1109 110 HOH HOH . F 5 HOH A 111 1110 111 HOH HOH . F 5 HOH A 112 1111 112 HOH HOH . F 5 HOH A 113 1112 113 HOH HOH . F 5 HOH A 114 1113 114 HOH HOH . F 5 HOH A 115 1114 115 HOH HOH . F 5 HOH A 116 1115 116 HOH HOH . F 5 HOH A 117 1116 117 HOH HOH . F 5 HOH A 118 1117 118 HOH HOH . F 5 HOH A 119 1118 119 HOH HOH . F 5 HOH A 120 1119 120 HOH HOH . F 5 HOH A 121 1120 121 HOH HOH . F 5 HOH A 122 1121 122 HOH HOH . F 5 HOH A 123 1122 123 HOH HOH . F 5 HOH A 124 1123 124 HOH HOH . F 5 HOH A 125 1124 125 HOH HOH . F 5 HOH A 126 1125 126 HOH HOH . F 5 HOH A 127 1126 127 HOH HOH . F 5 HOH A 128 1127 128 HOH HOH . F 5 HOH A 129 1128 129 HOH HOH . F 5 HOH A 130 1129 130 HOH HOH . F 5 HOH A 131 1130 131 HOH HOH . F 5 HOH A 132 1131 132 HOH HOH . F 5 HOH A 133 1132 133 HOH HOH . F 5 HOH A 134 1133 134 HOH HOH . F 5 HOH A 135 1134 136 HOH HOH . F 5 HOH A 136 1135 137 HOH HOH . F 5 HOH A 137 1136 139 HOH HOH . F 5 HOH A 138 1137 140 HOH HOH . F 5 HOH A 139 1138 143 HOH HOH . F 5 HOH A 140 1139 144 HOH HOH . F 5 HOH A 141 1140 145 HOH HOH . F 5 HOH A 142 1141 146 HOH HOH . F 5 HOH A 143 1142 147 HOH HOH . F 5 HOH A 144 1143 148 HOH HOH . F 5 HOH A 145 1144 150 HOH HOH . F 5 HOH A 146 1145 151 HOH HOH . F 5 HOH A 147 1146 153 HOH HOH . F 5 HOH A 148 1147 154 HOH HOH . F 5 HOH A 149 1148 155 HOH HOH . F 5 HOH A 150 1149 156 HOH HOH . F 5 HOH A 151 1150 157 HOH HOH . F 5 HOH A 152 1151 158 HOH HOH . F 5 HOH A 153 1152 159 HOH HOH . F 5 HOH A 154 1153 160 HOH HOH . F 5 HOH A 155 1154 161 HOH HOH . F 5 HOH A 156 1155 162 HOH HOH . F 5 HOH A 157 1156 163 HOH HOH . F 5 HOH A 158 1157 164 HOH HOH . F 5 HOH A 159 1158 166 HOH HOH . F 5 HOH A 160 1159 167 HOH HOH . F 5 HOH A 161 1160 168 HOH HOH . F 5 HOH A 162 1161 169 HOH HOH . F 5 HOH A 163 1162 170 HOH HOH . F 5 HOH A 164 1163 171 HOH HOH . F 5 HOH A 165 1164 172 HOH HOH . F 5 HOH A 166 1165 173 HOH HOH . F 5 HOH A 167 1166 174 HOH HOH . F 5 HOH A 168 1167 175 HOH HOH . F 5 HOH A 169 1168 176 HOH HOH . F 5 HOH A 170 1169 177 HOH HOH . F 5 HOH A 171 1170 178 HOH HOH . F 5 HOH A 172 1171 181 HOH HOH . F 5 HOH A 173 1172 184 HOH HOH . F 5 HOH A 174 1173 185 HOH HOH . F 5 HOH A 175 1174 186 HOH HOH . F 5 HOH A 176 1175 187 HOH HOH . F 5 HOH A 177 1176 190 HOH HOH . F 5 HOH A 178 1177 191 HOH HOH . F 5 HOH A 179 1178 192 HOH HOH . F 5 HOH A 180 1179 193 HOH HOH . F 5 HOH A 181 1180 195 HOH HOH . F 5 HOH A 182 1181 200 HOH HOH . F 5 HOH A 183 1182 201 HOH HOH . F 5 HOH A 184 1183 203 HOH HOH . F 5 HOH A 185 1184 204 HOH HOH . F 5 HOH A 186 1185 207 HOH HOH . F 5 HOH A 187 1186 208 HOH HOH . F 5 HOH A 188 1187 210 HOH HOH . F 5 HOH A 189 1188 211 HOH HOH . F 5 HOH A 190 1189 212 HOH HOH . F 5 HOH A 191 1190 214 HOH HOH . F 5 HOH A 192 1191 215 HOH HOH . F 5 HOH A 193 1192 216 HOH HOH . F 5 HOH A 194 1193 217 HOH HOH . F 5 HOH A 195 1194 219 HOH HOH . F 5 HOH A 196 1195 223 HOH HOH . F 5 HOH A 197 1196 228 HOH HOH . F 5 HOH A 198 1197 231 HOH HOH . F 5 HOH A 199 1198 232 HOH HOH . F 5 HOH A 200 1199 233 HOH HOH . F 5 HOH A 201 1200 234 HOH HOH . F 5 HOH A 202 1201 235 HOH HOH . F 5 HOH A 203 1202 236 HOH HOH . F 5 HOH A 204 1203 238 HOH HOH . F 5 HOH A 205 1204 240 HOH HOH . F 5 HOH A 206 1205 243 HOH HOH . F 5 HOH A 207 1206 245 HOH HOH . F 5 HOH A 208 1207 248 HOH HOH . F 5 HOH A 209 1208 249 HOH HOH . F 5 HOH A 210 1209 251 HOH HOH . F 5 HOH A 211 1210 258 HOH HOH . F 5 HOH A 212 1211 260 HOH HOH . F 5 HOH A 213 1212 262 HOH HOH . F 5 HOH A 214 1213 266 HOH HOH . F 5 HOH A 215 1214 271 HOH HOH . F 5 HOH A 216 1215 274 HOH HOH . F 5 HOH A 217 1216 279 HOH HOH . F 5 HOH A 218 1217 280 HOH HOH . F 5 HOH A 219 1218 281 HOH HOH . F 5 HOH A 220 1219 284 HOH HOH . F 5 HOH A 221 1220 290 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . E 4 37.026 21.425 23.7 0.11 21.16 ? C TRS 802 A 1 HETATM 2 C C2 TRS . . . E 4 36.442 20.04 23.45 0.33 23.97 ? C2 TRS 802 A 1 HETATM 3 N N TRS . . . E 4 37.087 22.176 22.444 0.11 17.67 ? N TRS 802 A 1 HETATM 4 O O2 TRS . . . E 4 35.11 20.012 23.915 0.33 22.04 ? O2 TRS 802 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #