data_1RPG # _model_server_result.job_id 5iNMAtv1dx2_IXEmyWTKsw _model_server_result.datetime_utc '2024-10-26 10:17:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rpg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":127}' # _entry.id 1RPG # _exptl.entry_id 1RPG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106 _cell.angle_gamma 90 _cell.entry_id 1RPG _cell.length_a 30 _cell.length_b 38.27 _cell.length_c 53.17 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RPG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 84 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 40 A CYS 40 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? disulf ? disulf3 A SG CYS 58 A CYS 58 1_555 A SG CYS 110 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? disulf ? disulf4 A SG CYS 65 A CYS 65 1_555 A SG CYS 72 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? covale ? covale1 A OE1 GLN 69 A GLN 69 1_555 B N6A CPA . A CPA 126 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.556 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 303 n n C1 H11 MPD sing 304 n n C1 H12 MPD sing 305 n n C1 H13 MPD sing 306 n n C2 O2 MPD sing 307 n n C2 CM MPD sing 308 n n C2 C3 MPD sing 309 n n O2 HO2 MPD sing 310 n n CM HM1 MPD sing 311 n n CM HM2 MPD sing 312 n n CM HM3 MPD sing 313 n n C3 C4 MPD sing 314 n n C3 H31 MPD sing 315 n n C3 H32 MPD sing 316 n n C4 O4 MPD sing 317 n n C4 C5 MPD sing 318 n n C4 H4 MPD sing 319 n n O4 HO4 MPD sing 320 n n C5 H51 MPD sing 321 n n C5 H52 MPD sing 322 n n C5 H53 MPD sing 323 n n # _atom_sites.entry_id 1RPG _atom_sites.fract_transf_matrix[1][1] 0.033333 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009558 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02613 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019566 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CPA A 1 126 126 CPA CPA . C 3 MPD A 1 127 127 MPD MPD . D 4 HOH A 1 128 128 HOH HOH . D 4 HOH A 2 129 129 HOH HOH . D 4 HOH A 3 130 130 HOH HOH . D 4 HOH A 4 131 131 HOH HOH . D 4 HOH A 5 132 132 HOH HOH . D 4 HOH A 6 133 133 HOH HOH . D 4 HOH A 7 134 134 HOH HOH . D 4 HOH A 8 135 135 HOH HOH . D 4 HOH A 9 136 136 HOH HOH . D 4 HOH A 10 137 137 HOH HOH . D 4 HOH A 11 138 138 HOH HOH . D 4 HOH A 12 139 139 HOH HOH . D 4 HOH A 13 140 140 HOH HOH . D 4 HOH A 14 141 141 HOH HOH . D 4 HOH A 15 142 142 HOH HOH . D 4 HOH A 16 143 143 HOH HOH . D 4 HOH A 17 144 144 HOH HOH . D 4 HOH A 18 145 145 HOH HOH . D 4 HOH A 19 146 146 HOH HOH . D 4 HOH A 20 147 147 HOH HOH . D 4 HOH A 21 148 148 HOH HOH . D 4 HOH A 22 149 149 HOH HOH . D 4 HOH A 23 150 150 HOH HOH . D 4 HOH A 24 151 151 HOH HOH . D 4 HOH A 25 152 152 HOH HOH . D 4 HOH A 26 153 153 HOH HOH . D 4 HOH A 27 154 154 HOH HOH . D 4 HOH A 28 155 155 HOH HOH . D 4 HOH A 29 156 156 HOH HOH . D 4 HOH A 30 157 157 HOH HOH . D 4 HOH A 31 158 158 HOH HOH . D 4 HOH A 32 159 159 HOH HOH . D 4 HOH A 33 160 160 HOH HOH . D 4 HOH A 34 161 161 HOH HOH . D 4 HOH A 35 162 162 HOH HOH . D 4 HOH A 36 163 163 HOH HOH . D 4 HOH A 37 164 164 HOH HOH . D 4 HOH A 38 165 165 HOH HOH . D 4 HOH A 39 166 166 HOH HOH . D 4 HOH A 40 167 167 HOH HOH . D 4 HOH A 41 168 168 HOH HOH . D 4 HOH A 42 169 169 HOH HOH . D 4 HOH A 43 170 170 HOH HOH . D 4 HOH A 44 171 171 HOH HOH . D 4 HOH A 45 172 172 HOH HOH . D 4 HOH A 46 173 173 HOH HOH . D 4 HOH A 47 174 174 HOH HOH . D 4 HOH A 48 175 175 HOH HOH . D 4 HOH A 49 176 176 HOH HOH . D 4 HOH A 50 177 177 HOH HOH . D 4 HOH A 51 178 178 HOH HOH . D 4 HOH A 52 179 179 HOH HOH . D 4 HOH A 53 180 180 HOH HOH . D 4 HOH A 54 181 181 HOH HOH . D 4 HOH A 55 182 182 HOH HOH . D 4 HOH A 56 183 183 HOH HOH . D 4 HOH A 57 184 184 HOH HOH . D 4 HOH A 58 185 185 HOH HOH . D 4 HOH A 59 186 186 HOH HOH . D 4 HOH A 60 187 187 HOH HOH . D 4 HOH A 61 188 188 HOH HOH . D 4 HOH A 62 189 189 HOH HOH . D 4 HOH A 63 190 190 HOH HOH . D 4 HOH A 64 191 191 HOH HOH . D 4 HOH A 65 192 192 HOH HOH . D 4 HOH A 66 193 193 HOH HOH . D 4 HOH A 67 194 194 HOH HOH . D 4 HOH A 68 195 195 HOH HOH . D 4 HOH A 69 196 196 HOH HOH . D 4 HOH A 70 197 197 HOH HOH . D 4 HOH A 71 198 198 HOH HOH . D 4 HOH A 72 199 199 HOH HOH . D 4 HOH A 73 200 200 HOH HOH . D 4 HOH A 74 201 201 HOH HOH . D 4 HOH A 75 202 202 HOH HOH . D 4 HOH A 76 203 203 HOH HOH . D 4 HOH A 77 204 204 HOH HOH . D 4 HOH A 78 205 205 HOH HOH . D 4 HOH A 79 206 206 HOH HOH . D 4 HOH A 80 207 207 HOH HOH . D 4 HOH A 81 208 208 HOH HOH . D 4 HOH A 82 209 209 HOH HOH . D 4 HOH A 83 210 210 HOH HOH . D 4 HOH A 84 211 211 HOH HOH . D 4 HOH A 85 212 212 HOH HOH . D 4 HOH A 86 213 213 HOH HOH . D 4 HOH A 87 214 214 HOH HOH . D 4 HOH A 88 215 215 HOH HOH . D 4 HOH A 89 216 216 HOH HOH . D 4 HOH A 90 217 217 HOH HOH . D 4 HOH A 91 218 218 HOH HOH . D 4 HOH A 92 219 219 HOH HOH . D 4 HOH A 93 220 220 HOH HOH . D 4 HOH A 94 221 221 HOH HOH . D 4 HOH A 95 222 222 HOH HOH . D 4 HOH A 96 223 223 HOH HOH . D 4 HOH A 97 224 224 HOH HOH . D 4 HOH A 98 225 225 HOH HOH . D 4 HOH A 99 226 226 HOH HOH . D 4 HOH A 100 227 227 HOH HOH . D 4 HOH A 101 228 228 HOH HOH . D 4 HOH A 102 229 229 HOH HOH . D 4 HOH A 103 230 230 HOH HOH . D 4 HOH A 104 231 231 HOH HOH . D 4 HOH A 105 232 232 HOH HOH . D 4 HOH A 106 233 233 HOH HOH . D 4 HOH A 107 234 234 HOH HOH . D 4 HOH A 108 235 235 HOH HOH . D 4 HOH A 109 236 236 HOH HOH . D 4 HOH A 110 237 237 HOH HOH . D 4 HOH A 111 238 238 HOH HOH . D 4 HOH A 112 239 239 HOH HOH . D 4 HOH A 113 240 240 HOH HOH . D 4 HOH A 114 241 241 HOH HOH . D 4 HOH A 115 242 242 HOH HOH . D 4 HOH A 116 243 243 HOH HOH . D 4 HOH A 117 244 244 HOH HOH . D 4 HOH A 118 245 245 HOH HOH . D 4 HOH A 119 246 246 HOH HOH . D 4 HOH A 120 247 247 HOH HOH . D 4 HOH A 121 248 248 HOH HOH . D 4 HOH A 122 249 249 HOH HOH . D 4 HOH A 123 250 250 HOH HOH . D 4 HOH A 124 251 251 HOH HOH . D 4 HOH A 125 252 252 HOH HOH . D 4 HOH A 126 253 253 HOH HOH . D 4 HOH A 127 254 254 HOH HOH . D 4 HOH A 128 255 255 HOH HOH . D 4 HOH A 129 256 256 HOH HOH . D 4 HOH A 130 257 257 HOH HOH . D 4 HOH A 131 258 258 HOH HOH . D 4 HOH A 132 259 259 HOH HOH . D 4 HOH A 133 260 260 HOH HOH . D 4 HOH A 134 261 261 HOH HOH . D 4 HOH A 135 262 262 HOH HOH . D 4 HOH A 136 263 263 HOH HOH . D 4 HOH A 137 264 264 HOH HOH . D 4 HOH A 138 265 265 HOH HOH . D 4 HOH A 139 266 266 HOH HOH . D 4 HOH A 140 267 267 HOH HOH . D 4 HOH A 141 268 268 HOH HOH . D 4 HOH A 142 269 269 HOH HOH . D 4 HOH A 143 270 270 HOH HOH . D 4 HOH A 144 271 271 HOH HOH . D 4 HOH A 145 272 272 HOH HOH . D 4 HOH A 146 273 273 HOH HOH . D 4 HOH A 147 274 274 HOH HOH . D 4 HOH A 148 275 275 HOH HOH . D 4 HOH A 149 276 276 HOH HOH . D 4 HOH A 150 277 277 HOH HOH . D 4 HOH A 151 278 278 HOH HOH . D 4 HOH A 152 279 279 HOH HOH . D 4 HOH A 153 280 280 HOH HOH . D 4 HOH A 154 281 281 HOH HOH . D 4 HOH A 155 282 282 HOH HOH . D 4 HOH A 156 283 283 HOH HOH . D 4 HOH A 157 284 284 HOH HOH . D 4 HOH A 158 285 285 HOH HOH . D 4 HOH A 159 286 286 HOH HOH . D 4 HOH A 160 287 287 HOH HOH . D 4 HOH A 161 288 288 HOH HOH . D 4 HOH A 162 289 289 HOH HOH . D 4 HOH A 163 290 290 HOH HOH . D 4 HOH A 164 291 291 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . C 3 25.81 6.001 28.992 1 0.64 ? C1 MPD 127 A 1 HETATM 2 C C2 MPD . . . C 3 26.677 7.221 29 1 0.78 ? C2 MPD 127 A 1 HETATM 3 O O2 MPD . . . C 3 25.876 8.235 29.669 1 0.79 ? O2 MPD 127 A 1 HETATM 4 C CM MPD . . . C 3 27.921 7.22 29.839 1 0.77 ? CM MPD 127 A 1 HETATM 5 C C3 MPD . . . C 3 26.929 7.67 27.587 1 0.62 ? C3 MPD 127 A 1 HETATM 6 C C4 MPD . . . C 3 27.018 6.548 26.614 1 0.63 ? C4 MPD 127 A 1 HETATM 7 O O4 MPD . . . C 3 27.36 7.259 25.419 1 0.77 ? O4 MPD 127 A 1 HETATM 8 C C5 MPD . . . C 3 28.263 5.707 26.852 1 0.72 ? C5 MPD 127 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 358 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #