data_1RPJ # _model_server_result.job_id gAalzsd9FZZ3Lq5m14wWXw _model_server_result.datetime_utc '2024-12-04 07:12:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rpj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":291}' # _entry.id 1RPJ # _exptl.entry_id 1RPJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description beta-D-allopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.71 _cell.angle_gamma 90 _cell.entry_id 1RPJ _cell.length_a 33.38 _cell.length_b 67.82 _cell.length_c 53.59 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RPJ _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N ALA 1 A ALA 1 1_555 B ZN ZN . A ZN 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc2 A O ALA 1 A ALA 1 1_555 B ZN ZN . A ZN 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc3 B ZN ZN . A ZN 289 1_555 E O HOH . A HOH 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc4 B ZN ZN . A ZN 289 1_555 E O HOH . A HOH 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc5 B ZN ZN . A ZN 289 1_555 E O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc6 B ZN ZN . A ZN 289 1_555 E O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id ALL _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-allopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-allose;D-allose;allose;D-ALLOPYRANOSE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 ALL sing 13 n n C1 O1 ALL sing 14 n n C1 O5 ALL sing 15 n n C1 H1 ALL sing 16 n n C2 C3 ALL sing 17 n n C2 O2 ALL sing 18 n n C2 H2 ALL sing 19 n n C3 C4 ALL sing 20 n n C3 O3 ALL sing 21 n n C3 H3 ALL sing 22 n n C4 C5 ALL sing 23 n n C4 O4 ALL sing 24 n n C4 H4 ALL sing 25 n n C5 C6 ALL sing 26 n n C5 O5 ALL sing 27 n n C5 H5 ALL sing 28 n n C6 O6 ALL sing 29 n n C6 H61 ALL sing 30 n n C6 H62 ALL sing 31 n n O1 HO1 ALL sing 32 n n O2 HO2 ALL sing 33 n n O3 HO3 ALL sing 34 n n O4 HO4 ALL sing 35 n n O6 HO6 ALL sing 36 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version ALL DAllpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 ALL b-D-allopyranose 'COMMON NAME' GMML 1 ALL b-D-Allp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 ALL All 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1RPJ _atom_sites.fract_transf_matrix[1][1] 0.029958 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003524 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014745 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018789 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 289 1 ZN ZN . C 3 SO4 A 1 290 2 SO4 SO4 . D 4 ALL A 1 291 1 ALL ALL . E 5 HOH A 1 292 1 HOH HOH . E 5 HOH A 2 293 2 HOH HOH . E 5 HOH A 3 294 3 HOH HOH . E 5 HOH A 4 295 4 HOH HOH . E 5 HOH A 5 296 5 HOH HOH . E 5 HOH A 6 297 6 HOH HOH . E 5 HOH A 7 298 7 HOH HOH . E 5 HOH A 8 299 8 HOH HOH . E 5 HOH A 9 300 9 HOH HOH . E 5 HOH A 10 301 10 HOH HOH . E 5 HOH A 11 302 11 HOH HOH . E 5 HOH A 12 303 12 HOH HOH . E 5 HOH A 13 304 13 HOH HOH . E 5 HOH A 14 305 14 HOH HOH . E 5 HOH A 15 306 15 HOH HOH . E 5 HOH A 16 307 16 HOH HOH . E 5 HOH A 17 308 17 HOH HOH . E 5 HOH A 18 309 18 HOH HOH . E 5 HOH A 19 310 19 HOH HOH . E 5 HOH A 20 311 20 HOH HOH . E 5 HOH A 21 312 21 HOH HOH . E 5 HOH A 22 313 22 HOH HOH . E 5 HOH A 23 314 23 HOH HOH . E 5 HOH A 24 315 24 HOH HOH . E 5 HOH A 25 316 25 HOH HOH . E 5 HOH A 26 317 26 HOH HOH . E 5 HOH A 27 318 27 HOH HOH . E 5 HOH A 28 319 28 HOH HOH . E 5 HOH A 29 320 29 HOH HOH . E 5 HOH A 30 321 30 HOH HOH . E 5 HOH A 31 322 31 HOH HOH . E 5 HOH A 32 323 32 HOH HOH . E 5 HOH A 33 324 33 HOH HOH . E 5 HOH A 34 325 34 HOH HOH . E 5 HOH A 35 326 35 HOH HOH . E 5 HOH A 36 327 36 HOH HOH . E 5 HOH A 37 328 37 HOH HOH . E 5 HOH A 38 329 38 HOH HOH . E 5 HOH A 39 330 39 HOH HOH . E 5 HOH A 40 331 40 HOH HOH . E 5 HOH A 41 332 41 HOH HOH . E 5 HOH A 42 333 42 HOH HOH . E 5 HOH A 43 334 43 HOH HOH . E 5 HOH A 44 335 44 HOH HOH . E 5 HOH A 45 336 45 HOH HOH . E 5 HOH A 46 337 46 HOH HOH . E 5 HOH A 47 338 47 HOH HOH . E 5 HOH A 48 339 48 HOH HOH . E 5 HOH A 49 340 49 HOH HOH . E 5 HOH A 50 341 50 HOH HOH . E 5 HOH A 51 342 51 HOH HOH . E 5 HOH A 52 343 52 HOH HOH . E 5 HOH A 53 344 53 HOH HOH . E 5 HOH A 54 345 54 HOH HOH . E 5 HOH A 55 346 55 HOH HOH . E 5 HOH A 56 347 56 HOH HOH . E 5 HOH A 57 348 57 HOH HOH . E 5 HOH A 58 349 58 HOH HOH . E 5 HOH A 59 350 59 HOH HOH . E 5 HOH A 60 351 60 HOH HOH . E 5 HOH A 61 352 61 HOH HOH . E 5 HOH A 62 353 62 HOH HOH . E 5 HOH A 63 354 63 HOH HOH . E 5 HOH A 64 355 64 HOH HOH . E 5 HOH A 65 356 65 HOH HOH . E 5 HOH A 66 357 66 HOH HOH . E 5 HOH A 67 358 67 HOH HOH . E 5 HOH A 68 359 68 HOH HOH . E 5 HOH A 69 360 69 HOH HOH . E 5 HOH A 70 361 70 HOH HOH . E 5 HOH A 71 362 71 HOH HOH . E 5 HOH A 72 363 72 HOH HOH . E 5 HOH A 73 364 73 HOH HOH . E 5 HOH A 74 365 74 HOH HOH . E 5 HOH A 75 366 75 HOH HOH . E 5 HOH A 76 367 76 HOH HOH . E 5 HOH A 77 368 77 HOH HOH . E 5 HOH A 78 369 78 HOH HOH . E 5 HOH A 79 370 79 HOH HOH . E 5 HOH A 80 371 80 HOH HOH . E 5 HOH A 81 372 81 HOH HOH . E 5 HOH A 82 373 82 HOH HOH . E 5 HOH A 83 374 83 HOH HOH . E 5 HOH A 84 375 84 HOH HOH . E 5 HOH A 85 376 85 HOH HOH . E 5 HOH A 86 377 86 HOH HOH . E 5 HOH A 87 378 87 HOH HOH . E 5 HOH A 88 379 88 HOH HOH . E 5 HOH A 89 380 89 HOH HOH . E 5 HOH A 90 381 90 HOH HOH . E 5 HOH A 91 382 91 HOH HOH . E 5 HOH A 92 383 92 HOH HOH . E 5 HOH A 93 384 93 HOH HOH . E 5 HOH A 94 385 94 HOH HOH . E 5 HOH A 95 386 95 HOH HOH . E 5 HOH A 96 387 96 HOH HOH . E 5 HOH A 97 388 97 HOH HOH . E 5 HOH A 98 389 98 HOH HOH . E 5 HOH A 99 390 99 HOH HOH . E 5 HOH A 100 391 100 HOH HOH . E 5 HOH A 101 392 101 HOH HOH . E 5 HOH A 102 393 102 HOH HOH . E 5 HOH A 103 394 103 HOH HOH . E 5 HOH A 104 395 104 HOH HOH . E 5 HOH A 105 396 105 HOH HOH . E 5 HOH A 106 397 106 HOH HOH . E 5 HOH A 107 398 107 HOH HOH . E 5 HOH A 108 399 108 HOH HOH . E 5 HOH A 109 400 109 HOH HOH . E 5 HOH A 110 401 110 HOH HOH . E 5 HOH A 111 402 111 HOH HOH . E 5 HOH A 112 403 112 HOH HOH . E 5 HOH A 113 404 113 HOH HOH . E 5 HOH A 114 405 114 HOH HOH . E 5 HOH A 115 406 115 HOH HOH . E 5 HOH A 116 407 116 HOH HOH . E 5 HOH A 117 408 117 HOH HOH . E 5 HOH A 118 409 118 HOH HOH . E 5 HOH A 119 410 119 HOH HOH . E 5 HOH A 120 411 120 HOH HOH . E 5 HOH A 121 412 121 HOH HOH . E 5 HOH A 122 413 122 HOH HOH . E 5 HOH A 123 414 123 HOH HOH . E 5 HOH A 124 415 124 HOH HOH . E 5 HOH A 125 416 125 HOH HOH . E 5 HOH A 126 417 126 HOH HOH . E 5 HOH A 127 418 127 HOH HOH . E 5 HOH A 128 419 128 HOH HOH . E 5 HOH A 129 420 129 HOH HOH . E 5 HOH A 130 421 130 HOH HOH . E 5 HOH A 131 422 131 HOH HOH . E 5 HOH A 132 423 132 HOH HOH . E 5 HOH A 133 424 133 HOH HOH . E 5 HOH A 134 425 134 HOH HOH . E 5 HOH A 135 426 135 HOH HOH . E 5 HOH A 136 427 136 HOH HOH . E 5 HOH A 137 428 137 HOH HOH . E 5 HOH A 138 429 138 HOH HOH . E 5 HOH A 139 430 139 HOH HOH . E 5 HOH A 140 431 140 HOH HOH . E 5 HOH A 141 432 141 HOH HOH . E 5 HOH A 142 433 142 HOH HOH . E 5 HOH A 143 434 143 HOH HOH . E 5 HOH A 144 435 144 HOH HOH . E 5 HOH A 145 436 145 HOH HOH . E 5 HOH A 146 437 146 HOH HOH . E 5 HOH A 147 438 147 HOH HOH . E 5 HOH A 148 439 148 HOH HOH . E 5 HOH A 149 440 149 HOH HOH . E 5 HOH A 150 441 150 HOH HOH . E 5 HOH A 151 442 151 HOH HOH . E 5 HOH A 152 443 152 HOH HOH . E 5 HOH A 153 444 153 HOH HOH . E 5 HOH A 154 445 154 HOH HOH . E 5 HOH A 155 446 155 HOH HOH . E 5 HOH A 156 447 156 HOH HOH . E 5 HOH A 157 448 157 HOH HOH . E 5 HOH A 158 449 158 HOH HOH . E 5 HOH A 159 450 159 HOH HOH . E 5 HOH A 160 451 160 HOH HOH . E 5 HOH A 161 452 161 HOH HOH . E 5 HOH A 162 453 162 HOH HOH . E 5 HOH A 163 454 163 HOH HOH . E 5 HOH A 164 455 164 HOH HOH . E 5 HOH A 165 456 165 HOH HOH . E 5 HOH A 166 457 166 HOH HOH . E 5 HOH A 167 458 167 HOH HOH . E 5 HOH A 168 459 168 HOH HOH . E 5 HOH A 169 460 169 HOH HOH . E 5 HOH A 170 461 170 HOH HOH . E 5 HOH A 171 462 171 HOH HOH . E 5 HOH A 172 463 172 HOH HOH . E 5 HOH A 173 464 173 HOH HOH . E 5 HOH A 174 465 174 HOH HOH . E 5 HOH A 175 466 175 HOH HOH . E 5 HOH A 176 467 176 HOH HOH . E 5 HOH A 177 468 177 HOH HOH . E 5 HOH A 178 469 178 HOH HOH . E 5 HOH A 179 470 179 HOH HOH . E 5 HOH A 180 471 180 HOH HOH . E 5 HOH A 181 472 181 HOH HOH . E 5 HOH A 182 473 182 HOH HOH . E 5 HOH A 183 474 183 HOH HOH . E 5 HOH A 184 475 184 HOH HOH . E 5 HOH A 185 476 185 HOH HOH . E 5 HOH A 186 477 186 HOH HOH . E 5 HOH A 187 478 187 HOH HOH . E 5 HOH A 188 479 188 HOH HOH . E 5 HOH A 189 480 189 HOH HOH . E 5 HOH A 190 481 190 HOH HOH . E 5 HOH A 191 482 191 HOH HOH . E 5 HOH A 192 483 192 HOH HOH . E 5 HOH A 193 484 193 HOH HOH . E 5 HOH A 194 485 194 HOH HOH . E 5 HOH A 195 486 195 HOH HOH . E 5 HOH A 196 487 196 HOH HOH . E 5 HOH A 197 488 197 HOH HOH . E 5 HOH A 198 489 198 HOH HOH . E 5 HOH A 199 490 200 HOH HOH . E 5 HOH A 200 491 201 HOH HOH . E 5 HOH A 201 492 202 HOH HOH . E 5 HOH A 202 493 203 HOH HOH . E 5 HOH A 203 494 204 HOH HOH . E 5 HOH A 204 495 205 HOH HOH . E 5 HOH A 205 496 206 HOH HOH . E 5 HOH A 206 497 207 HOH HOH . E 5 HOH A 207 498 208 HOH HOH . E 5 HOH A 208 499 209 HOH HOH . E 5 HOH A 209 500 210 HOH HOH . E 5 HOH A 210 501 211 HOH HOH . E 5 HOH A 211 502 212 HOH HOH . E 5 HOH A 212 503 213 HOH HOH . E 5 HOH A 213 504 214 HOH HOH . E 5 HOH A 214 505 215 HOH HOH . E 5 HOH A 215 506 216 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ALL . . . D 4 4.859 7.133 10.458 1 6.01 ? C1 ALL 291 A 1 HETATM 2 C C2 ALL . . . D 4 5.19 8.536 11.023 1 5.26 ? C2 ALL 291 A 1 HETATM 3 C C3 ALL . . . D 4 4.75 8.629 12.481 1 6.7 ? C3 ALL 291 A 1 HETATM 4 C C4 ALL . . . D 4 3.247 8.334 12.57 1 4.41 ? C4 ALL 291 A 1 HETATM 5 C C5 ALL . . . D 4 2.995 6.96 11.933 1 3.84 ? C5 ALL 291 A 1 HETATM 6 C C6 ALL . . . D 4 1.59 6.455 12.004 1 5.58 ? C6 ALL 291 A 1 HETATM 7 O O1 ALL . . . D 4 5.242 7.006 9.107 1 3.59 ? O1 ALL 291 A 1 HETATM 8 O O2 ALL . . . D 4 6.585 8.761 10.925 1 5.46 ? O2 ALL 291 A 1 HETATM 9 O O3 ALL . . . D 4 5.473 7.595 13.234 1 5.78 ? O3 ALL 291 A 1 HETATM 10 O O4 ALL . . . D 4 2.787 8.27 13.925 1 5.51 ? O4 ALL 291 A 1 HETATM 11 O O5 ALL . . . D 4 3.467 6.921 10.592 1 5.4 ? O5 ALL 291 A 1 HETATM 12 O O6 ALL . . . D 4 0.684 7.345 11.299 1 3.34 ? O6 ALL 291 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #