data_1RQ1 # _model_server_result.job_id HTFX4H2QK4pDicHnTB4f_Q _model_server_result.datetime_utc '2024-12-02 11:21:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rq1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":634}' # _entry.id 1RQ1 # _exptl.entry_id 1RQ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1RQ1 _cell.length_a 106.2 _cell.length_b 106.2 _cell.length_c 124.3 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RQ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 52 A CYS 90 1_555 A SG CYS 311 A CYS 349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 62 A CYS 100 1_555 A SG CYS 67 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 105 A CYS 143 1_555 A SG CYS 128 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 112 A CYS 150 1_555 A SG CYS 257 A CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 314 A CYS 352 1_555 A SG CYS 317 A CYS 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? covale ? covale1 A SG CYS 170 A CYS 208 1_555 D C1 NEN . A NEN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.821 ? metalc ? metalc1 A NE2 HIS 199 A HIS 237 1_555 B CD CD . A CD 813 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.012 ? metalc ? metalc2 A NE2 HIS 348 A HIS 386 1_555 C CD CD . A CD 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.851 ? metalc ? metalc3 A OE2 GLU 370 A GLU 408 1_555 B CD CD . A CD 813 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc4 B CD CD . A CD 813 1_555 F O HOH . A HOH 829 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.026 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 1RQ1 _atom_sites.fract_transf_matrix[1][1] 0.009416 _atom_sites.fract_transf_matrix[1][2] 0.005436 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010873 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008045 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 813 813 CD CD . C 2 CD A 1 814 814 CD CD . D 3 NEN A 1 501 501 NEN NEM . E 4 FAD A 1 634 634 FAD FAD . F 5 HOH A 1 815 1 HOH TIP . F 5 HOH A 2 816 2 HOH TIP . F 5 HOH A 3 817 3 HOH TIP . F 5 HOH A 4 818 4 HOH TIP . F 5 HOH A 5 819 5 HOH TIP . F 5 HOH A 6 820 6 HOH TIP . F 5 HOH A 7 821 7 HOH TIP . F 5 HOH A 8 822 8 HOH TIP . F 5 HOH A 9 823 9 HOH TIP . F 5 HOH A 10 824 10 HOH TIP . F 5 HOH A 11 825 11 HOH TIP . F 5 HOH A 12 826 12 HOH TIP . F 5 HOH A 13 827 13 HOH TIP . F 5 HOH A 14 828 14 HOH TIP . F 5 HOH A 15 829 15 HOH TIP . F 5 HOH A 16 830 16 HOH TIP . F 5 HOH A 17 831 17 HOH TIP . F 5 HOH A 18 832 18 HOH TIP . F 5 HOH A 19 833 19 HOH TIP . F 5 HOH A 20 834 20 HOH TIP . F 5 HOH A 21 835 21 HOH TIP . F 5 HOH A 22 836 22 HOH TIP . F 5 HOH A 23 837 23 HOH TIP . F 5 HOH A 24 838 24 HOH TIP . F 5 HOH A 25 839 25 HOH TIP . F 5 HOH A 26 840 26 HOH TIP . F 5 HOH A 27 841 27 HOH TIP . F 5 HOH A 28 842 28 HOH TIP . F 5 HOH A 29 843 29 HOH TIP . F 5 HOH A 30 844 30 HOH TIP . F 5 HOH A 31 845 31 HOH TIP . F 5 HOH A 32 846 32 HOH TIP . F 5 HOH A 33 847 33 HOH TIP . F 5 HOH A 34 848 34 HOH TIP . F 5 HOH A 35 849 35 HOH TIP . F 5 HOH A 36 850 36 HOH TIP . F 5 HOH A 37 851 37 HOH TIP . F 5 HOH A 38 852 38 HOH TIP . F 5 HOH A 39 853 39 HOH TIP . F 5 HOH A 40 854 40 HOH TIP . F 5 HOH A 41 855 41 HOH TIP . F 5 HOH A 42 856 42 HOH TIP . F 5 HOH A 43 857 43 HOH TIP . F 5 HOH A 44 858 44 HOH TIP . F 5 HOH A 45 859 45 HOH TIP . F 5 HOH A 46 860 46 HOH TIP . F 5 HOH A 47 861 47 HOH TIP . F 5 HOH A 48 862 48 HOH TIP . F 5 HOH A 49 863 49 HOH TIP . F 5 HOH A 50 864 50 HOH TIP . F 5 HOH A 51 865 51 HOH TIP . F 5 HOH A 52 866 52 HOH TIP . F 5 HOH A 53 867 53 HOH TIP . F 5 HOH A 54 868 54 HOH TIP . F 5 HOH A 55 869 55 HOH TIP . F 5 HOH A 56 870 56 HOH TIP . F 5 HOH A 57 871 57 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . E 4 73.424 45.519 19.872 1 57.13 ? PA FAD 634 A 1 HETATM 2 O O1A FAD . . . E 4 72.682 44.214 19.841 1 60.45 ? O1A FAD 634 A 1 HETATM 3 O O2A FAD . . . E 4 73.118 46.831 19.231 1 55.35 ? O2A FAD 634 A 1 HETATM 4 O O5B FAD . . . E 4 74.914 44.994 19.895 1 53.49 ? O5B FAD 634 A 1 HETATM 5 C C5B FAD . . . E 4 75.478 43.755 19.473 1 49.02 ? C5B FAD 634 A 1 HETATM 6 C C4B FAD . . . E 4 76.85 44.056 18.921 1 47.41 ? C4B FAD 634 A 1 HETATM 7 O O4B FAD . . . E 4 76.755 43.635 17.529 1 46.02 ? O4B FAD 634 A 1 HETATM 8 C C3B FAD . . . E 4 77.648 45.383 18.988 1 46.1 ? C3B FAD 634 A 1 HETATM 9 O O3B FAD . . . E 4 79 44.976 19.258 1 47.1 ? O3B FAD 634 A 1 HETATM 10 C C2B FAD . . . E 4 77.45 45.938 17.658 1 45.35 ? C2B FAD 634 A 1 HETATM 11 O O2B FAD . . . E 4 78.692 46.468 17.318 1 44.81 ? O2B FAD 634 A 1 HETATM 12 C C1B FAD . . . E 4 76.964 44.809 16.732 1 44.4 ? C1B FAD 634 A 1 HETATM 13 N N9A FAD . . . E 4 75.801 45.1 15.965 1 41.83 ? N9A FAD 634 A 1 HETATM 14 C C8A FAD . . . E 4 74.619 45.854 16.195 1 41.75 ? C8A FAD 634 A 1 HETATM 15 N N7A FAD . . . E 4 73.856 45.907 15.135 1 40.69 ? N7A FAD 634 A 1 HETATM 16 C C5A FAD . . . E 4 74.52 45.191 14.139 1 40.01 ? C5A FAD 634 A 1 HETATM 17 C C6A FAD . . . E 4 74.317 44.825 12.791 1 41.47 ? C6A FAD 634 A 1 HETATM 18 N N6A FAD . . . E 4 73.216 45.303 12.208 1 43.75 ? N6A FAD 634 A 1 HETATM 19 N N1A FAD . . . E 4 75.168 44.043 12.027 1 39.09 ? N1A FAD 634 A 1 HETATM 20 C C2A FAD . . . E 4 76.336 43.597 12.547 1 39.15 ? C2A FAD 634 A 1 HETATM 21 N N3A FAD . . . E 4 76.565 43.941 13.895 1 39.28 ? N3A FAD 634 A 1 HETATM 22 C C4A FAD . . . E 4 75.64 44.723 14.634 1 38.94 ? C4A FAD 634 A 1 HETATM 23 N N1 FAD . . . E 4 64.83 44.92 21.743 1 54.8 ? N1 FAD 634 A 1 HETATM 24 C C2 FAD . . . E 4 63.705 45.713 21.861 1 53.69 ? C2 FAD 634 A 1 HETATM 25 O O2 FAD . . . E 4 63.753 46.622 22.718 1 54.78 ? O2 FAD 634 A 1 HETATM 26 N N3 FAD . . . E 4 62.715 45.154 21.069 1 52.36 ? N3 FAD 634 A 1 HETATM 27 C C4 FAD . . . E 4 62.781 43.945 20.323 1 54.19 ? C4 FAD 634 A 1 HETATM 28 O O4 FAD . . . E 4 61.643 43.658 19.814 1 57.47 ? O4 FAD 634 A 1 HETATM 29 C C4X FAD . . . E 4 63.928 43.167 20.364 1 53.11 ? C4X FAD 634 A 1 HETATM 30 N N5 FAD . . . E 4 64.123 41.862 19.799 1 49.35 ? N5 FAD 634 A 1 HETATM 31 C C5X FAD . . . E 4 65.296 41.064 19.854 1 49.04 ? C5X FAD 634 A 1 HETATM 32 C C6 FAD . . . E 4 65.396 39.842 19.153 1 48.27 ? C6 FAD 634 A 1 HETATM 33 C C7 FAD . . . E 4 66.558 39.036 19.341 1 46.25 ? C7 FAD 634 A 1 HETATM 34 C C7M FAD . . . E 4 66.694 37.874 18.373 1 48.67 ? C7M FAD 634 A 1 HETATM 35 C C8 FAD . . . E 4 67.622 39.376 20.224 1 47.17 ? C8 FAD 634 A 1 HETATM 36 C C8M FAD . . . E 4 68.873 38.555 20.506 1 45.12 ? C8M FAD 634 A 1 HETATM 37 C C9 FAD . . . E 4 67.502 40.628 20.85 1 47.67 ? C9 FAD 634 A 1 HETATM 38 C C9A FAD . . . E 4 66.435 41.551 20.668 1 50.02 ? C9A FAD 634 A 1 HETATM 39 N N10 FAD . . . E 4 66.186 42.949 21.123 1 53.76 ? N10 FAD 634 A 1 HETATM 40 C C10 FAD . . . E 4 65.04 43.721 21.081 1 54.32 ? C10 FAD 634 A 1 HETATM 41 C C1' FAD . . . E 4 67.301 43.584 21.754 1 52.9 ? C1' FAD 634 A 1 HETATM 42 C C2' FAD . . . E 4 68.299 44.324 20.926 1 55.1 ? C2' FAD 634 A 1 HETATM 43 O O2' FAD . . . E 4 68.659 43.67 19.68 1 53.08 ? O2' FAD 634 A 1 HETATM 44 C C3' FAD . . . E 4 69.461 44.684 21.8 1 56.85 ? C3' FAD 634 A 1 HETATM 45 O O3' FAD . . . E 4 70.586 43.827 21.929 1 58.18 ? O3' FAD 634 A 1 HETATM 46 C C4' FAD . . . E 4 69.722 46.146 22.107 1 57.25 ? C4' FAD 634 A 1 HETATM 47 O O4' FAD . . . E 4 68.739 47.225 22.083 1 59.5 ? O4' FAD 634 A 1 HETATM 48 C C5' FAD . . . E 4 70.561 46.472 23.261 1 57.29 ? C5' FAD 634 A 1 HETATM 49 O O5' FAD . . . E 4 71.499 46.899 22.271 1 58.94 ? O5' FAD 634 A 1 HETATM 50 P P FAD . . . E 4 73.04 47.007 22.52 1 58.17 ? P FAD 634 A 1 HETATM 51 O O1P FAD . . . E 4 73.578 48.311 22.135 1 62.08 ? O1P FAD 634 A 1 HETATM 52 O O2P FAD . . . E 4 73.456 46.551 23.872 1 57.19 ? O2P FAD 634 A 1 HETATM 53 O O3P FAD . . . E 4 73.596 46.156 21.295 1 56.06 ? O3P FAD 634 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 452 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 53 #