data_1RQ1 # _model_server_result.job_id OoZz7uzczhFtHH2Fe2Is4A _model_server_result.datetime_utc '2024-11-30 07:23:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rq1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":813}' # _entry.id 1RQ1 # _exptl.entry_id 1RQ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1RQ1 _cell.length_a 106.2 _cell.length_b 106.2 _cell.length_c 124.3 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RQ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 52 A CYS 90 1_555 A SG CYS 311 A CYS 349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 62 A CYS 100 1_555 A SG CYS 67 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 105 A CYS 143 1_555 A SG CYS 128 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 112 A CYS 150 1_555 A SG CYS 257 A CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 314 A CYS 352 1_555 A SG CYS 317 A CYS 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? covale ? covale1 A SG CYS 170 A CYS 208 1_555 D C1 NEN . A NEN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.821 ? metalc ? metalc1 A NE2 HIS 199 A HIS 237 1_555 B CD CD . A CD 813 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.012 ? metalc ? metalc2 A NE2 HIS 348 A HIS 386 1_555 C CD CD . A CD 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.851 ? metalc ? metalc3 A OE2 GLU 370 A GLU 408 1_555 B CD CD . A CD 813 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc4 B CD CD . A CD 813 1_555 F O HOH . A HOH 829 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.026 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1RQ1 _atom_sites.fract_transf_matrix[1][1] 0.009416 _atom_sites.fract_transf_matrix[1][2] 0.005436 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010873 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008045 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 813 813 CD CD . C 2 CD A 1 814 814 CD CD . D 3 NEN A 1 501 501 NEN NEM . E 4 FAD A 1 634 634 FAD FAD . F 5 HOH A 1 815 1 HOH TIP . F 5 HOH A 2 816 2 HOH TIP . F 5 HOH A 3 817 3 HOH TIP . F 5 HOH A 4 818 4 HOH TIP . F 5 HOH A 5 819 5 HOH TIP . F 5 HOH A 6 820 6 HOH TIP . F 5 HOH A 7 821 7 HOH TIP . F 5 HOH A 8 822 8 HOH TIP . F 5 HOH A 9 823 9 HOH TIP . F 5 HOH A 10 824 10 HOH TIP . F 5 HOH A 11 825 11 HOH TIP . F 5 HOH A 12 826 12 HOH TIP . F 5 HOH A 13 827 13 HOH TIP . F 5 HOH A 14 828 14 HOH TIP . F 5 HOH A 15 829 15 HOH TIP . F 5 HOH A 16 830 16 HOH TIP . F 5 HOH A 17 831 17 HOH TIP . F 5 HOH A 18 832 18 HOH TIP . F 5 HOH A 19 833 19 HOH TIP . F 5 HOH A 20 834 20 HOH TIP . F 5 HOH A 21 835 21 HOH TIP . F 5 HOH A 22 836 22 HOH TIP . F 5 HOH A 23 837 23 HOH TIP . F 5 HOH A 24 838 24 HOH TIP . F 5 HOH A 25 839 25 HOH TIP . F 5 HOH A 26 840 26 HOH TIP . F 5 HOH A 27 841 27 HOH TIP . F 5 HOH A 28 842 28 HOH TIP . F 5 HOH A 29 843 29 HOH TIP . F 5 HOH A 30 844 30 HOH TIP . F 5 HOH A 31 845 31 HOH TIP . F 5 HOH A 32 846 32 HOH TIP . F 5 HOH A 33 847 33 HOH TIP . F 5 HOH A 34 848 34 HOH TIP . F 5 HOH A 35 849 35 HOH TIP . F 5 HOH A 36 850 36 HOH TIP . F 5 HOH A 37 851 37 HOH TIP . F 5 HOH A 38 852 38 HOH TIP . F 5 HOH A 39 853 39 HOH TIP . F 5 HOH A 40 854 40 HOH TIP . F 5 HOH A 41 855 41 HOH TIP . F 5 HOH A 42 856 42 HOH TIP . F 5 HOH A 43 857 43 HOH TIP . F 5 HOH A 44 858 44 HOH TIP . F 5 HOH A 45 859 45 HOH TIP . F 5 HOH A 46 860 46 HOH TIP . F 5 HOH A 47 861 47 HOH TIP . F 5 HOH A 48 862 48 HOH TIP . F 5 HOH A 49 863 49 HOH TIP . F 5 HOH A 50 864 50 HOH TIP . F 5 HOH A 51 865 51 HOH TIP . F 5 HOH A 52 866 52 HOH TIP . F 5 HOH A 53 867 53 HOH TIP . F 5 HOH A 54 868 54 HOH TIP . F 5 HOH A 55 869 55 HOH TIP . F 5 HOH A 56 870 56 HOH TIP . F 5 HOH A 57 871 57 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 55.859 _atom_site.Cartn_y 49.475 _atom_site.Cartn_z 14.326 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 86.83 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 813 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #