data_1RQD # _model_server_result.job_id el20alRvv9EvicvAPnAQQA _model_server_result.datetime_utc '2025-01-18 07:11:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rqd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":370}' # _entry.id 1RQD # _exptl.entry_id 1RQD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1RQD _cell.length_a 104.78 _cell.length_b 104.78 _cell.length_c 159.25 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RQD _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 53.083333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D N8 GC7 . A GC7 371 5_555 E O7N NAD . B NAD 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? covale ? covale2 D N8 GC7 . A GC7 371 1_555 E O7N NAD . B NAD 370 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 268 n n PA O2A NAD sing 269 n n PA O5B NAD sing 270 n n PA O3 NAD sing 271 n n O2A HOA2 NAD sing 272 n n O5B C5B NAD sing 273 n n C5B C4B NAD sing 274 n n C5B H51A NAD sing 275 n n C5B H52A NAD sing 276 n n C4B O4B NAD sing 277 n n C4B C3B NAD sing 278 n n C4B H4B NAD sing 279 n n O4B C1B NAD sing 280 n n C3B O3B NAD sing 281 n n C3B C2B NAD sing 282 n n C3B H3B NAD sing 283 n n O3B HO3A NAD sing 284 n n C2B O2B NAD sing 285 n n C2B C1B NAD sing 286 n n C2B H2B NAD sing 287 n n O2B HO2A NAD sing 288 n n C1B N9A NAD sing 289 n n C1B H1B NAD sing 290 n n N9A C8A NAD sing 291 n y N9A C4A NAD sing 292 n y C8A N7A NAD doub 293 n y C8A H8A NAD sing 294 n n N7A C5A NAD sing 295 n y C5A C6A NAD sing 296 n y C5A C4A NAD doub 297 n y C6A N6A NAD sing 298 n n C6A N1A NAD doub 299 n y N6A H61A NAD sing 300 n n N6A H62A NAD sing 301 n n N1A C2A NAD sing 302 n y C2A N3A NAD doub 303 n y C2A H2A NAD sing 304 n n N3A C4A NAD sing 305 n y O3 PN NAD sing 306 n n PN O1N NAD doub 307 n n PN O2N NAD sing 308 n n PN O5D NAD sing 309 n n O5D C5D NAD sing 310 n n C5D C4D NAD sing 311 n n C5D H51N NAD sing 312 n n C5D H52N NAD sing 313 n n C4D O4D NAD sing 314 n n C4D C3D NAD sing 315 n n C4D H4D NAD sing 316 n n O4D C1D NAD sing 317 n n C3D O3D NAD sing 318 n n C3D C2D NAD sing 319 n n C3D H3D NAD sing 320 n n O3D HO3N NAD sing 321 n n C2D O2D NAD sing 322 n n C2D C1D NAD sing 323 n n C2D H2D NAD sing 324 n n O2D HO2N NAD sing 325 n n C1D N1N NAD sing 326 n n C1D H1D NAD sing 327 n n N1N C2N NAD sing 328 n y N1N C6N NAD doub 329 n y C2N C3N NAD doub 330 n y C2N H2N NAD sing 331 n n C3N C7N NAD sing 332 n n C3N C4N NAD sing 333 n y C7N O7N NAD doub 334 n n C7N N7N NAD sing 335 n n N7N H71N NAD sing 336 n n N7N H72N NAD sing 337 n n C4N C5N NAD doub 338 n y C4N H4N NAD sing 339 n n C5N C6N NAD sing 340 n y C5N H5N NAD sing 341 n n C6N H6N NAD sing 342 n n # _atom_sites.entry_id 1RQD _atom_sites.fract_transf_matrix[1][1] 0.009544 _atom_sites.fract_transf_matrix[1][2] 0.00551 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01102 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006279 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 370 1 NAD NAD . D 3 GC7 A 1 371 1 GC7 GC7 . E 2 NAD B 1 370 1 NAD NAD . F 3 GC7 B 1 371 1 GC7 GC7 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . C 2 37.068 9.287 16.04 1 41.37 ? PA NAD 370 A 1 HETATM 2 O O1A NAD . . . C 2 35.734 9.385 16.706 1 49.57 ? O1A NAD 370 A 1 HETATM 3 O O2A NAD . . . C 2 37.269 8.295 14.942 1 45.09 ? O2A NAD 370 A 1 HETATM 4 O O5B NAD . . . C 2 38.183 9.017 17.172 1 44.57 ? O5B NAD 370 A 1 HETATM 5 C C5B NAD . . . C 2 39.504 8.601 16.814 1 36.5 ? C5B NAD 370 A 1 HETATM 6 C C4B NAD . . . C 2 40.261 8.246 18.054 1 33.42 ? C4B NAD 370 A 1 HETATM 7 O O4B NAD . . . C 2 40.458 9.424 18.841 1 32.28 ? O4B NAD 370 A 1 HETATM 8 C C3B NAD . . . C 2 39.535 7.276 18.962 1 36.97 ? C3B NAD 370 A 1 HETATM 9 O O3B NAD . . . C 2 39.806 5.928 18.571 1 36.15 ? O3B NAD 370 A 1 HETATM 10 C C2B NAD . . . C 2 40.058 7.586 20.337 1 36.36 ? C2B NAD 370 A 1 HETATM 11 O O2B NAD . . . C 2 41.176 6.771 20.707 1 46.09 ? O2B NAD 370 A 1 HETATM 12 C C1B NAD . . . C 2 40.402 9.074 20.244 1 37.6 ? C1B NAD 370 A 1 HETATM 13 N N9A NAD . . . C 2 39.404 9.918 20.894 1 40.5 ? N9A NAD 370 A 1 HETATM 14 C C8A NAD . . . C 2 38.136 10.206 20.461 1 41.1 ? C8A NAD 370 A 1 HETATM 15 N N7A NAD . . . C 2 37.438 10.91 21.327 1 42.15 ? N7A NAD 370 A 1 HETATM 16 C C5A NAD . . . C 2 38.333 11.147 22.376 1 40.33 ? C5A NAD 370 A 1 HETATM 17 C C6A NAD . . . C 2 38.217 11.828 23.617 1 43.62 ? C6A NAD 370 A 1 HETATM 18 N N6A NAD . . . C 2 37.091 12.398 24.044 1 43.98 ? N6A NAD 370 A 1 HETATM 19 N N1A NAD . . . C 2 39.319 11.882 24.428 1 43.15 ? N1A NAD 370 A 1 HETATM 20 C C2A NAD . . . C 2 40.449 11.294 24.021 1 39.82 ? C2A NAD 370 A 1 HETATM 21 N N3A NAD . . . C 2 40.674 10.625 22.888 1 41.15 ? N3A NAD 370 A 1 HETATM 22 C C4A NAD . . . C 2 39.56 10.575 22.106 1 39.81 ? C4A NAD 370 A 1 HETATM 23 O O3 NAD . . . C 2 37.44 10.731 15.456 1 38.56 ? O3 NAD 370 A 1 HETATM 24 P PN NAD . . . C 2 37.441 11.326 13.982 1 41.7 ? PN NAD 370 A 1 HETATM 25 O O1N NAD . . . C 2 38.525 10.672 13.195 1 41.42 ? O1N NAD 370 A 1 HETATM 26 O O2N NAD . . . C 2 37.505 12.801 14.154 1 40.38 ? O2N NAD 370 A 1 HETATM 27 O O5D NAD . . . C 2 36.015 10.909 13.382 1 37.88 ? O5D NAD 370 A 1 HETATM 28 C C5D NAD . . . C 2 35.907 10.129 12.192 1 36.73 ? C5D NAD 370 A 1 HETATM 29 C C4D NAD . . . C 2 35.115 10.889 11.167 1 38.08 ? C4D NAD 370 A 1 HETATM 30 O O4D NAD . . . C 2 33.75 11.017 11.58 1 43.53 ? O4D NAD 370 A 1 HETATM 31 C C3D NAD . . . C 2 35.576 12.302 10.955 1 43.28 ? C3D NAD 370 A 1 HETATM 32 O O3D NAD . . . C 2 36.599 12.343 9.966 1 50.82 ? O3D NAD 370 A 1 HETATM 33 C C2D NAD . . . C 2 34.372 13.07 10.504 1 42.93 ? C2D NAD 370 A 1 HETATM 34 O O2D NAD . . . C 2 34.389 13.337 9.123 1 46.82 ? O2D NAD 370 A 1 HETATM 35 C C1D NAD . . . C 2 33.219 12.211 10.947 1 41.62 ? C1D NAD 370 A 1 HETATM 36 N N1N NAD . . . C 2 32.296 12.911 11.85 1 34.44 ? N1N NAD 370 A 1 HETATM 37 C C2N NAD . . . C 2 32.373 13.002 13.288 1 27.23 ? C2N NAD 370 A 1 HETATM 38 C C3N NAD . . . C 2 31.255 13.334 13.977 1 30.33 ? C3N NAD 370 A 1 HETATM 39 C C7N NAD . . . C 2 31.311 13.311 15.436 1 35.45 ? C7N NAD 370 A 1 HETATM 40 O O7N NAD . . . C 2 31.063 12.281 16.046 1 45.11 ? O7N NAD 370 A 1 HETATM 41 N N7N NAD . . . C 2 31.577 14.364 16.136 1 36.08 ? N7N NAD 370 A 1 HETATM 42 C C4N NAD . . . C 2 30.27 14.008 13.389 1 32.89 ? C4N NAD 370 A 1 HETATM 43 C C5N NAD . . . C 2 30.224 14.113 12.035 1 36.66 ? C5N NAD 370 A 1 HETATM 44 C C6N NAD . . . C 2 31.191 13.542 11.268 1 33.23 ? C6N NAD 370 A 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 44 #