data_1RQD # _model_server_result.job_id JKHON90Gq14L0RAC0bC2ng _model_server_result.datetime_utc '2025-01-18 07:13:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rqd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":371}' # _entry.id 1RQD # _exptl.entry_id 1RQD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 174.287 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-GUANIDINIUM-7-AMINOHEPTANE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1RQD _cell.length_a 104.78 _cell.length_b 104.78 _cell.length_c 159.25 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RQD _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 53.083333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D N8 GC7 . A GC7 371 5_555 E O7N NAD . B NAD 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? covale ? covale2 D N8 GC7 . A GC7 371 1_555 E O7N NAD . B NAD 370 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? # _chem_comp.formula 'C8 H22 N4' _chem_comp.formula_weight 174.287 _chem_comp.id GC7 _chem_comp.mon_nstd_flag . _chem_comp.name 1-GUANIDINIUM-7-AMINOHEPTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 GC7 sing 83 n n N1 HN11 GC7 sing 84 n n N1 HN12 GC7 sing 85 n n C1 C2 GC7 sing 86 n n C1 H11 GC7 sing 87 n n C1 H12 GC7 sing 88 n n C2 C3 GC7 sing 89 n n C2 H21 GC7 sing 90 n n C2 H22 GC7 sing 91 n n C3 C4 GC7 sing 92 n n C3 H31 GC7 sing 93 n n C3 H32 GC7 sing 94 n n C4 C5 GC7 sing 95 n n C4 H41 GC7 sing 96 n n C4 H42 GC7 sing 97 n n C5 C6 GC7 sing 98 n n C5 H51 GC7 sing 99 n n C5 H52 GC7 sing 100 n n C6 C7 GC7 sing 101 n n C6 H61 GC7 sing 102 n n C6 H62 GC7 sing 103 n n C7 N8 GC7 sing 104 n n C7 H71 GC7 sing 105 n n C7 H72 GC7 sing 106 n n N8 C9 GC7 sing 107 n n N8 HN8 GC7 sing 108 n n C9 NH1 GC7 sing 109 n n C9 NH2 GC7 sing 110 n n C9 H9 GC7 sing 111 n n NH1 HH11 GC7 sing 112 n n NH1 HH12 GC7 sing 113 n n NH2 HH21 GC7 sing 114 n n NH2 HH22 GC7 sing 115 n n # _atom_sites.entry_id 1RQD _atom_sites.fract_transf_matrix[1][1] 0.009544 _atom_sites.fract_transf_matrix[1][2] 0.00551 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01102 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006279 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 370 1 NAD NAD . D 3 GC7 A 1 371 1 GC7 GC7 . E 2 NAD B 1 370 1 NAD NAD . F 3 GC7 B 1 371 1 GC7 GC7 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GC7 . . . F 3 26.033 -12.981 45.43 1 20.36 ? N1 GC7 371 B 1 HETATM 2 C C1 GC7 . . . F 3 25.703 -12.465 44.058 1 20.39 ? C1 GC7 371 B 1 HETATM 3 C C2 GC7 . . . F 3 26.957 -12.345 43.226 1 14.43 ? C2 GC7 371 B 1 HETATM 4 C C3 GC7 . . . F 3 26.639 -11.9 41.833 1 9.76 ? C3 GC7 371 B 1 HETATM 5 C C4 GC7 . . . F 3 27.872 -11.979 40.961 1 4.84 ? C4 GC7 371 B 1 HETATM 6 C C5 GC7 . . . F 3 27.563 -11.404 39.597 1 14.24 ? C5 GC7 371 B 1 HETATM 7 C C6 GC7 . . . F 3 28.799 -11.221 38.776 1 16.4 ? C6 GC7 371 B 1 HETATM 8 C C7 GC7 . . . F 3 28.57 -10.471 37.457 1 17.49 ? C7 GC7 371 B 1 HETATM 9 N N8 GC7 . . . F 3 29.789 -10.558 36.649 1 22.08 ? N8 GC7 371 B 1 HETATM 10 C C9 GC7 . . . F 3 29.997 -9.993 35.457 1 24.88 ? C9 GC7 371 B 1 HETATM 11 N NH1 GC7 . . . F 3 29.061 -9.249 34.871 1 25.45 ? NH1 GC7 371 B 1 HETATM 12 N NH2 GC7 . . . F 3 31.152 -10.207 34.826 1 26.94 ? NH2 GC7 371 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 12 #