data_1RQK # _model_server_result.job_id yaBY8206CEvRHCwgckR8tg _model_server_result.datetime_utc '2024-11-27 19:55:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rqk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":500}' # _entry.id 1RQK # _exptl.entry_id 1RQK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 55.845 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (III) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1RQK _cell.length_a 141.718 _cell.length_b 141.718 _cell.length_c 187.179 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RQK _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 153 L HIS 153 1_555 E MG BCL . L BCL 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc2 A NE2 HIS 173 L HIS 173 1_555 D MG BCL . L BCL 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc3 A NE2 HIS 190 L HIS 190 1_555 J FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc4 A NE2 HIS 230 L HIS 230 1_555 J FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc5 B NE2 HIS 182 M HIS 182 1_555 K MG BCL . M BCL 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc6 B NE2 HIS 202 M HIS 202 1_555 L MG BCL . M BCL 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc7 B NE2 HIS 219 M HIS 219 1_555 J FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc8 B OE1 GLU 234 M GLU 234 1_555 J FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc9 B OE2 GLU 234 M GLU 234 1_555 J FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc10 B NE2 HIS 266 M HIS 266 1_555 J FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? # _chem_comp.formula 'Fe 3' _chem_comp.formula_weight 55.845 _chem_comp.id FE _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1RQK _atom_sites.fract_transf_matrix[1][1] 0.007056 _atom_sites.fract_transf_matrix[1][2] 0.004074 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008148 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005342 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 BCL L 1 302 302 BCL BCL . E 4 BCL L 1 304 304 BCL BCL . F 5 BPH L 1 402 402 BPH BPH . G 6 U10 L 1 502 502 U10 U10 . H 7 LDA L 1 904 904 LDA LDA . I 7 LDA L 1 908 908 LDA LDA . J 8 FE M 1 500 500 FE FE . K 4 BCL M 1 501 301 BCL BCL . L 4 BCL M 1 502 303 BCL BCL . M 5 BPH M 1 401 401 BPH BPH . N 6 U10 M 1 503 501 U10 U10 . O 9 SP2 M 1 600 600 SP2 SP2 . P 10 CDL M 1 800 800 CDL CDL . Q 7 LDA M 1 902 902 LDA LDA . R 7 LDA M 1 903 903 LDA LDA . S 7 LDA M 1 905 905 LDA LDA . T 7 LDA M 1 906 906 LDA LDA . U 7 LDA H 1 901 901 LDA LDA . V 11 HOH L 1 909 2 HOH HOH . V 11 HOH L 2 910 6 HOH HOH . V 11 HOH L 3 911 13 HOH HOH . V 11 HOH L 4 912 16 HOH HOH . V 11 HOH L 5 913 17 HOH HOH . V 11 HOH L 6 914 18 HOH HOH . V 11 HOH L 7 915 22 HOH HOH . V 11 HOH L 8 916 23 HOH HOH . V 11 HOH L 9 917 33 HOH HOH . V 11 HOH L 10 918 39 HOH HOH . V 11 HOH L 11 919 40 HOH HOH . V 11 HOH L 12 920 42 HOH HOH . V 11 HOH L 13 921 43 HOH HOH . V 11 HOH L 14 922 46 HOH HOH . V 11 HOH L 15 923 47 HOH HOH . V 11 HOH L 16 924 50 HOH HOH . V 11 HOH L 17 925 53 HOH HOH . V 11 HOH L 18 926 54 HOH HOH . V 11 HOH L 19 927 57 HOH HOH . V 11 HOH L 20 928 58 HOH HOH . V 11 HOH L 21 929 59 HOH HOH . V 11 HOH L 22 930 66 HOH HOH . V 11 HOH L 23 931 76 HOH HOH . V 11 HOH L 24 932 81 HOH HOH . V 11 HOH L 25 933 82 HOH HOH . V 11 HOH L 26 934 83 HOH HOH . V 11 HOH L 27 935 84 HOH HOH . V 11 HOH L 28 936 90 HOH HOH . V 11 HOH L 29 937 92 HOH HOH . V 11 HOH L 30 938 93 HOH HOH . V 11 HOH L 31 939 97 HOH HOH . V 11 HOH L 32 940 102 HOH HOH . V 11 HOH L 33 941 107 HOH HOH . V 11 HOH L 34 942 111 HOH HOH . V 11 HOH L 35 943 112 HOH HOH . V 11 HOH L 36 944 116 HOH HOH . V 11 HOH L 37 945 117 HOH HOH . V 11 HOH L 38 946 121 HOH HOH . V 11 HOH L 39 947 123 HOH HOH . V 11 HOH L 40 948 124 HOH HOH . V 11 HOH L 41 949 133 HOH HOH . V 11 HOH L 42 950 137 HOH HOH . V 11 HOH L 43 951 138 HOH HOH . V 11 HOH L 44 952 139 HOH HOH . V 11 HOH L 45 953 140 HOH HOH . V 11 HOH L 46 954 150 HOH HOH . V 11 HOH L 47 955 151 HOH HOH . V 11 HOH L 48 956 162 HOH HOH . V 11 HOH L 49 957 173 HOH HOH . V 11 HOH L 50 958 176 HOH HOH . V 11 HOH L 51 959 177 HOH HOH . V 11 HOH L 52 960 178 HOH HOH . V 11 HOH L 53 961 182 HOH HOH . V 11 HOH L 54 962 195 HOH HOH . V 11 HOH L 55 963 203 HOH HOH . V 11 HOH L 56 964 204 HOH HOH . V 11 HOH L 57 965 206 HOH HOH . W 11 HOH M 1 907 1 HOH HOH . W 11 HOH M 2 908 4 HOH HOH . W 11 HOH M 3 909 11 HOH HOH . W 11 HOH M 4 910 12 HOH HOH . W 11 HOH M 5 911 14 HOH HOH . W 11 HOH M 6 912 15 HOH HOH . W 11 HOH M 7 913 24 HOH HOH . W 11 HOH M 8 914 25 HOH HOH . W 11 HOH M 9 915 26 HOH HOH . W 11 HOH M 10 916 27 HOH HOH . W 11 HOH M 11 917 29 HOH HOH . W 11 HOH M 12 918 35 HOH HOH . W 11 HOH M 13 919 37 HOH HOH . W 11 HOH M 14 920 38 HOH HOH . W 11 HOH M 15 921 45 HOH HOH . W 11 HOH M 16 922 48 HOH HOH . W 11 HOH M 17 923 51 HOH HOH . W 11 HOH M 18 924 55 HOH HOH . W 11 HOH M 19 925 60 HOH HOH . W 11 HOH M 20 926 65 HOH HOH . W 11 HOH M 21 927 68 HOH HOH . W 11 HOH M 22 928 70 HOH HOH . W 11 HOH M 23 929 71 HOH HOH . W 11 HOH M 24 930 72 HOH HOH . W 11 HOH M 25 931 74 HOH HOH . W 11 HOH M 26 932 75 HOH HOH . W 11 HOH M 27 933 78 HOH HOH . W 11 HOH M 28 934 79 HOH HOH . W 11 HOH M 29 935 86 HOH HOH . W 11 HOH M 30 936 87 HOH HOH . W 11 HOH M 31 937 89 HOH HOH . W 11 HOH M 32 938 94 HOH HOH . W 11 HOH M 33 939 104 HOH HOH . W 11 HOH M 34 940 105 HOH HOH . W 11 HOH M 35 941 109 HOH HOH . W 11 HOH M 36 942 113 HOH HOH . W 11 HOH M 37 943 114 HOH HOH . W 11 HOH M 38 944 122 HOH HOH . W 11 HOH M 39 945 125 HOH HOH . W 11 HOH M 40 946 126 HOH HOH . W 11 HOH M 41 947 127 HOH HOH . W 11 HOH M 42 948 129 HOH HOH . W 11 HOH M 43 949 130 HOH HOH . W 11 HOH M 44 950 141 HOH HOH . W 11 HOH M 45 951 146 HOH HOH . W 11 HOH M 46 952 148 HOH HOH . W 11 HOH M 47 953 154 HOH HOH . W 11 HOH M 48 954 161 HOH HOH . W 11 HOH M 49 955 163 HOH HOH . W 11 HOH M 50 956 171 HOH HOH . W 11 HOH M 51 957 172 HOH HOH . W 11 HOH M 52 958 175 HOH HOH . W 11 HOH M 53 959 179 HOH HOH . W 11 HOH M 54 960 181 HOH HOH . W 11 HOH M 55 961 184 HOH HOH . W 11 HOH M 56 962 187 HOH HOH . W 11 HOH M 57 963 188 HOH HOH . W 11 HOH M 58 964 189 HOH HOH . W 11 HOH M 59 965 192 HOH HOH . W 11 HOH M 60 966 194 HOH HOH . W 11 HOH M 61 967 197 HOH HOH . W 11 HOH M 62 968 198 HOH HOH . W 11 HOH M 63 969 199 HOH HOH . W 11 HOH M 64 970 200 HOH HOH . W 11 HOH M 65 971 202 HOH HOH . W 11 HOH M 66 972 207 HOH HOH . X 11 HOH H 1 902 3 HOH HOH . X 11 HOH H 2 903 5 HOH HOH . X 11 HOH H 3 904 7 HOH HOH . X 11 HOH H 4 905 8 HOH HOH . X 11 HOH H 5 906 9 HOH HOH . X 11 HOH H 6 907 10 HOH HOH . X 11 HOH H 7 908 19 HOH HOH . X 11 HOH H 8 909 20 HOH HOH . X 11 HOH H 9 910 21 HOH HOH . X 11 HOH H 10 911 28 HOH HOH . X 11 HOH H 11 912 30 HOH HOH . X 11 HOH H 12 913 31 HOH HOH . X 11 HOH H 13 914 32 HOH HOH . X 11 HOH H 14 915 34 HOH HOH . X 11 HOH H 15 916 36 HOH HOH . X 11 HOH H 16 917 41 HOH HOH . X 11 HOH H 17 918 44 HOH HOH . X 11 HOH H 18 919 49 HOH HOH . X 11 HOH H 19 920 52 HOH HOH . X 11 HOH H 20 921 56 HOH HOH . X 11 HOH H 21 922 61 HOH HOH . X 11 HOH H 22 923 62 HOH HOH . X 11 HOH H 23 924 63 HOH HOH . X 11 HOH H 24 925 64 HOH HOH . X 11 HOH H 25 926 67 HOH HOH . X 11 HOH H 26 927 69 HOH HOH . X 11 HOH H 27 928 73 HOH HOH . X 11 HOH H 28 929 77 HOH HOH . X 11 HOH H 29 930 80 HOH HOH . X 11 HOH H 30 931 85 HOH HOH . X 11 HOH H 31 932 88 HOH HOH . X 11 HOH H 32 933 91 HOH HOH . X 11 HOH H 33 934 95 HOH HOH . X 11 HOH H 34 935 96 HOH HOH . X 11 HOH H 35 936 98 HOH HOH . X 11 HOH H 36 937 99 HOH HOH . X 11 HOH H 37 938 100 HOH HOH . X 11 HOH H 38 939 101 HOH HOH . X 11 HOH H 39 940 103 HOH HOH . X 11 HOH H 40 941 106 HOH HOH . X 11 HOH H 41 942 108 HOH HOH . X 11 HOH H 42 943 110 HOH HOH . X 11 HOH H 43 944 115 HOH HOH . X 11 HOH H 44 945 118 HOH HOH . X 11 HOH H 45 946 119 HOH HOH . X 11 HOH H 46 947 120 HOH HOH . X 11 HOH H 47 948 128 HOH HOH . X 11 HOH H 48 949 131 HOH HOH . X 11 HOH H 49 950 132 HOH HOH . X 11 HOH H 50 951 134 HOH HOH . X 11 HOH H 51 952 135 HOH HOH . X 11 HOH H 52 953 136 HOH HOH . X 11 HOH H 53 954 142 HOH HOH . X 11 HOH H 54 955 143 HOH HOH . X 11 HOH H 55 956 144 HOH HOH . X 11 HOH H 56 957 145 HOH HOH . X 11 HOH H 57 958 147 HOH HOH . X 11 HOH H 58 959 149 HOH HOH . X 11 HOH H 59 960 152 HOH HOH . X 11 HOH H 60 961 153 HOH HOH . X 11 HOH H 61 962 155 HOH HOH . X 11 HOH H 62 963 156 HOH HOH . X 11 HOH H 63 964 157 HOH HOH . X 11 HOH H 64 965 158 HOH HOH . X 11 HOH H 65 966 159 HOH HOH . X 11 HOH H 66 967 160 HOH HOH . X 11 HOH H 67 968 164 HOH HOH . X 11 HOH H 68 969 165 HOH HOH . X 11 HOH H 69 970 166 HOH HOH . X 11 HOH H 70 971 167 HOH HOH . X 11 HOH H 71 972 168 HOH HOH . X 11 HOH H 72 973 169 HOH HOH . X 11 HOH H 73 974 170 HOH HOH . X 11 HOH H 74 975 174 HOH HOH . X 11 HOH H 75 976 180 HOH HOH . X 11 HOH H 76 977 183 HOH HOH . X 11 HOH H 77 978 185 HOH HOH . X 11 HOH H 78 979 186 HOH HOH . X 11 HOH H 79 980 190 HOH HOH . X 11 HOH H 80 981 191 HOH HOH . X 11 HOH H 81 982 193 HOH HOH . X 11 HOH H 82 983 196 HOH HOH . X 11 HOH H 83 984 201 HOH HOH . X 11 HOH H 84 985 205 HOH HOH . X 11 HOH H 85 986 208 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 8 _atom_site.Cartn_x 8.372 _atom_site.Cartn_y 110.11 _atom_site.Cartn_z 40.571 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 49.67 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE _atom_site.auth_seq_id 500 _atom_site.auth_asym_id M _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #