data_1RQQ
#
_model_server_result.job_id            o166-vGPN40Be9xe5ftFkg 
_model_server_result.datetime_utc      '2024-11-22 06:20:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1rqq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":117}' 
#
_entry.id    1RQQ 
#
_exptl.entry_id    1RQQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              580.298 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'THIOPHOSPHORIC ACID O-((ADENOSYL-PHOSPHO)PHOSPHO)-S-ACETAMIDYL-DIESTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1RQQ 
_cell.length_a            87.216 
_cell.length_b            96.443 
_cell.length_c            121.993 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1RQQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ILE 180 A ILE 1157 1_555 A N PTR 181 A PTR 1158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale2 A C PTR 181 A PTR 1158 1_555 A N GLU 182 A GLU 1159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale3 A C ASP 184 A ASP 1161 1_555 A N PTR 185 A PTR 1162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 A C PTR 185 A PTR 1162 1_555 A N PTR 186 A PTR 1163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale5 A C PTR 186 A PTR 1163 1_555 A N ARG 187 A ARG 1164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale6 B C ILE 180 B ILE 1157 1_555 B N PTR 181 B PTR 1158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale7 B C PTR 181 B PTR 1158 1_555 B N GLU 182 B GLU 1159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale8 B C ASP 184 B ASP 1161 1_555 B N PTR 185 B PTR 1162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale9 B C PTR 185 B PTR 1162 1_555 B N PTR 186 B PTR 1163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale10 B C PTR 186 B PTR 1163 1_555 B N ARG 187 B ARG 1164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale11 E CZ PHE 10 E PHE 108 1_555 I NS 112 . E 112 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? 
covale ? covale12 F CZ PHE 10 F PHE 108 1_555 J NS 112 . F 112 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? 
metalc ? metalc1 K O HOH . A HOH 63 1_555 G MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? 
metalc ? metalc2 G MN MN . A MN 201 1_555 A OD1 ASN 160 A ASN 1137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? 
metalc ? metalc3 G MN MN . A MN 201 1_555 A OD2 ASP 173 A ASP 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
metalc ? metalc4 G MN MN . A MN 201 1_555 I O2S 112 . E 112 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
metalc ? metalc5 G MN MN . A MN 201 1_555 I O2G 112 . E 112 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? 
metalc ? metalc6 G MN MN . A MN 201 1_555 I O2B 112 . E 112 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? 
metalc ? metalc7 H MN MN . B MN 202 1_555 B OD1 ASN 160 B ASN 1137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc8 H MN MN . B MN 202 1_555 B OD2 ASP 173 B ASP 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
metalc ? metalc9 H MN MN . B MN 202 1_555 P O HOH . F HOH 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
metalc ? metalc10 H MN MN . B MN 202 1_555 J O2G 112 . F 112 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
metalc ? metalc11 H MN MN . B MN 202 1_555 J O2S 112 . F 112 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
metalc ? metalc12 H MN MN . B MN 202 1_555 J O2B 112 . F 112 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
#
_chem_comp.formula           'C12 H19 N6 O13 P3 S' 
_chem_comp.formula_weight    580.298 
_chem_comp.id                112 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'THIOPHOSPHORIC ACID O-((ADENOSYL-PHOSPHO)PHOSPHO)-S-ACETAMIDYL-DIESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
NS C2S 112 sing 1 n n 
NS HNS1 112 sing 2 n n 
NS HNS2 112 sing 3 n n 
C2S O2S 112 doub 4 n n 
C2S C1S 112 sing 5 n n 
C1S S1G 112 sing 6 n n 
C1S H1S1 112 sing 7 n n 
C1S H1S2 112 sing 8 n n 
PG S1G 112 sing 9 n n 
PG O2G 112 sing 10 n n 
PG O3G 112 doub 11 n n 
PG O3B 112 sing 12 n n 
O2G HOG2 112 sing 13 n n 
PB O1B 112 doub 14 n n 
PB O2B 112 sing 15 n n 
PB O3B 112 sing 16 n n 
PB O3A 112 sing 17 n n 
O2B HOB2 112 sing 18 n n 
PA O1A 112 doub 19 n n 
PA O2A 112 sing 20 n n 
PA O3A 112 sing 21 n n 
PA O5' 112 sing 22 n n 
O2A HOA2 112 sing 23 n n 
O5' C5' 112 sing 24 n n 
C5' C4' 112 sing 25 n n 
C5' "H5'1" 112 sing 26 n n 
C5' "H5'2" 112 sing 27 n n 
C4' O4' 112 sing 28 n n 
C4' C3' 112 sing 29 n n 
C4' H4' 112 sing 30 n n 
O4' C1' 112 sing 31 n n 
C3' O3' 112 sing 32 n n 
C3' C2' 112 sing 33 n n 
C3' H3' 112 sing 34 n n 
O3' HO3' 112 sing 35 n n 
C2' O2' 112 sing 36 n n 
C2' C1' 112 sing 37 n n 
C2' H2' 112 sing 38 n n 
O2' HO2' 112 sing 39 n n 
C1' N9 112 sing 40 n n 
C1' H1' 112 sing 41 n n 
N9 C8 112 sing 42 n y 
N9 C4 112 sing 43 n y 
C8 N7 112 doub 44 n y 
C8 H8 112 sing 45 n n 
N7 C5 112 sing 46 n y 
C5 C6 112 sing 47 n y 
C5 C4 112 doub 48 n y 
C6 N6 112 sing 49 n n 
C6 N1 112 doub 50 n y 
N6 HN61 112 sing 51 n n 
N6 HN62 112 sing 52 n n 
N1 C2 112 sing 53 n y 
C2 N3 112 doub 54 n y 
C2 H2 112 sing 55 n n 
N3 C4 112 sing 56 n y 
#
_atom_sites.entry_id                     1RQQ 
_atom_sites.fract_transf_matrix[1][1]    0.011466 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010369 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008197 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 MN A 1 201 201 MN MN . 
H 4 MN B 1 202 202 MN MN . 
I 5 112 E 1 117 101 112 112 . 
J 5 112 F 1 117 101 112 112 . 
K 6 HOH A 1 1 1 HOH HOH . 
K 6 HOH A 2 2 2 HOH HOH . 
K 6 HOH A 3 3 3 HOH HOH . 
K 6 HOH A 4 5 5 HOH HOH . 
K 6 HOH A 5 8 8 HOH HOH . 
K 6 HOH A 6 14 14 HOH HOH . 
K 6 HOH A 7 15 15 HOH HOH . 
K 6 HOH A 8 17 17 HOH HOH . 
K 6 HOH A 9 18 18 HOH HOH . 
K 6 HOH A 10 21 21 HOH HOH . 
K 6 HOH A 11 22 22 HOH HOH . 
K 6 HOH A 12 25 25 HOH HOH . 
K 6 HOH A 13 27 27 HOH HOH . 
K 6 HOH A 14 28 28 HOH HOH . 
K 6 HOH A 15 30 30 HOH HOH . 
K 6 HOH A 16 33 33 HOH HOH . 
K 6 HOH A 17 39 39 HOH HOH . 
K 6 HOH A 18 41 41 HOH HOH . 
K 6 HOH A 19 42 42 HOH HOH . 
K 6 HOH A 20 43 43 HOH HOH . 
K 6 HOH A 21 44 44 HOH HOH . 
K 6 HOH A 22 46 46 HOH HOH . 
K 6 HOH A 23 47 47 HOH HOH . 
K 6 HOH A 24 48 48 HOH HOH . 
K 6 HOH A 25 51 51 HOH HOH . 
K 6 HOH A 26 52 52 HOH HOH . 
K 6 HOH A 27 53 53 HOH HOH . 
K 6 HOH A 28 54 54 HOH HOH . 
K 6 HOH A 29 57 57 HOH HOH . 
K 6 HOH A 30 59 59 HOH HOH . 
K 6 HOH A 31 60 60 HOH HOH . 
K 6 HOH A 32 63 63 HOH HOH . 
K 6 HOH A 33 69 69 HOH HOH . 
K 6 HOH A 34 71 71 HOH HOH . 
K 6 HOH A 35 73 73 HOH HOH . 
K 6 HOH A 36 75 75 HOH HOH . 
K 6 HOH A 37 76 76 HOH HOH . 
L 6 HOH B 1 4 4 HOH HOH . 
L 6 HOH B 2 6 6 HOH HOH . 
L 6 HOH B 3 7 7 HOH HOH . 
L 6 HOH B 4 9 9 HOH HOH . 
L 6 HOH B 5 10 10 HOH HOH . 
L 6 HOH B 6 12 12 HOH HOH . 
L 6 HOH B 7 13 13 HOH HOH . 
L 6 HOH B 8 16 16 HOH HOH . 
L 6 HOH B 9 19 19 HOH HOH . 
L 6 HOH B 10 20 20 HOH HOH . 
L 6 HOH B 11 24 24 HOH HOH . 
L 6 HOH B 12 31 31 HOH HOH . 
L 6 HOH B 13 32 32 HOH HOH . 
L 6 HOH B 14 34 34 HOH HOH . 
L 6 HOH B 15 35 35 HOH HOH . 
L 6 HOH B 16 38 38 HOH HOH . 
L 6 HOH B 17 45 45 HOH HOH . 
L 6 HOH B 18 49 49 HOH HOH . 
L 6 HOH B 19 50 50 HOH HOH . 
L 6 HOH B 20 65 65 HOH HOH . 
L 6 HOH B 21 67 67 HOH HOH . 
L 6 HOH B 22 68 68 HOH HOH . 
L 6 HOH B 23 70 70 HOH HOH . 
L 6 HOH B 24 74 74 HOH HOH . 
L 6 HOH B 25 77 77 HOH HOH . 
M 6 HOH C 1 23 23 HOH HOH . 
M 6 HOH C 2 36 36 HOH HOH . 
M 6 HOH C 3 40 40 HOH HOH . 
M 6 HOH C 4 79 79 HOH HOH . 
N 6 HOH D 1 26 26 HOH HOH . 
N 6 HOH D 2 37 37 HOH HOH . 
N 6 HOH D 3 55 55 HOH HOH . 
N 6 HOH D 4 56 56 HOH HOH . 
N 6 HOH D 5 58 58 HOH HOH . 
N 6 HOH D 6 72 72 HOH HOH . 
N 6 HOH D 7 78 78 HOH HOH . 
O 6 HOH E 1 61 61 HOH HOH . 
O 6 HOH E 2 62 62 HOH HOH . 
O 6 HOH E 3 64 64 HOH HOH . 
P 6 HOH F 1 11 11 HOH HOH . 
P 6 HOH F 2 29 29 HOH HOH . 
P 6 HOH F 3 66 66 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N NS 112 . . . I 5 26.558 22.616 45.711 1 44.88 ? NS 112 117 E 1 
HETATM 2 C C2S 112 . . . I 5 26.344 23.935 45.749 1 48.07 ? C2S 112 117 E 1 
HETATM 3 O O2S 112 . . . I 5 25.164 24.28 45.812 1 48.85 ? O2S 112 117 E 1 
HETATM 4 C C1S 112 . . . I 5 27.445 24.995 45.731 1 49.1 ? C1S 112 117 E 1 
HETATM 5 P PG 112 . . . I 5 26.97 27.21 47.889 1 49.56 ? PG 112 117 E 1 
HETATM 6 S S1G 112 . . . I 5 28.058 25.565 47.371 1 53.97 ? S1G 112 117 E 1 
HETATM 7 O O2G 112 . . . I 5 25.518 26.925 47.847 1 48.44 ? O2G 112 117 E 1 
HETATM 8 O O3G 112 . . . I 5 27.439 27.752 49.205 1 48.66 ? O3G 112 117 E 1 
HETATM 9 P PB 112 . . . I 5 26.921 28.332 45.316 1 41.88 ? PB 112 117 E 1 
HETATM 10 O O1B 112 . . . I 5 28.149 28.409 44.528 1 42.47 ? O1B 112 117 E 1 
HETATM 11 O O2B 112 . . . I 5 25.784 27.468 44.856 1 39.97 ? O2B 112 117 E 1 
HETATM 12 O O3B 112 . . . I 5 27.119 28.299 46.834 1 45.61 ? O3B 112 117 E 1 
HETATM 13 P PA 112 . . . I 5 25.478 30.634 44.721 1 40.7 ? PA 112 117 E 1 
HETATM 14 O O1A 112 . . . I 5 26.134 31.102 43.503 1 44.61 ? O1A 112 117 E 1 
HETATM 15 O O2A 112 . . . I 5 24.207 29.903 44.664 1 42.56 ? O2A 112 117 E 1 
HETATM 16 O O3A 112 . . . I 5 26.533 29.8 45.418 1 42.78 ? O3A 112 117 E 1 
HETATM 17 O O5' 112 . . . I 5 25.234 31.942 45.641 1 44.64 ? O5' 112 117 E 1 
HETATM 18 C C5' 112 . . . I 5 26.196 32.554 46.563 1 46.87 ? C5' 112 117 E 1 
HETATM 19 C C4' 112 . . . I 5 25.526 33.215 47.745 1 47.07 ? C4' 112 117 E 1 
HETATM 20 O O4' 112 . . . I 5 24.631 34.24 47.254 1 46.88 ? O4' 112 117 E 1 
HETATM 21 C C3' 112 . . . I 5 24.639 32.291 48.564 1 48.24 ? C3' 112 117 E 1 
HETATM 22 O O3' 112 . . . I 5 25.394 31.709 49.616 1 52.31 ? O3' 112 117 E 1 
HETATM 23 C C2' 112 . . . I 5 23.619 33.235 49.173 1 48.65 ? C2' 112 117 E 1 
HETATM 24 O O2' 112 . . . I 5 24.125 33.807 50.362 1 53.02 ? O2' 112 117 E 1 
HETATM 25 C C1' 112 . . . I 5 23.484 34.304 48.082 1 47.39 ? C1' 112 117 E 1 
HETATM 26 N N9 112 . . . I 5 22.297 34.19 47.235 1 44.67 ? N9 112 117 E 1 
HETATM 27 C C8 112 . . . I 5 22.097 33.342 46.171 1 43.3 ? C8 112 117 E 1 
HETATM 28 N N7 112 . . . I 5 20.948 33.517 45.565 1 41.61 ? N7 112 117 E 1 
HETATM 29 C C5 112 . . . I 5 20.341 34.536 46.283 1 40.99 ? C5 112 117 E 1 
HETATM 30 C C6 112 . . . I 5 19.102 35.192 46.14 1 39.42 ? C6 112 117 E 1 
HETATM 31 N N6 112 . . . I 5 18.216 34.911 45.179 1 36.49 ? N6 112 117 E 1 
HETATM 32 N N1 112 . . . I 5 18.798 36.156 47.029 1 39.87 ? N1 112 117 E 1 
HETATM 33 C C2 112 . . . I 5 19.686 36.444 47.992 1 40.59 ? C2 112 117 E 1 
HETATM 34 N N3 112 . . . I 5 20.88 35.905 48.228 1 41.33 ? N3 112 117 E 1 
HETATM 35 C C4 112 . . . I 5 21.155 34.949 47.325 1 42.14 ? C4 112 117 E 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           35 
#