data_1RQR # _model_server_result.job_id ZVoBSj6TsFr12m3idLOsug _model_server_result.datetime_utc '2024-11-23 00:52:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rqr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":600}' # _entry.id 1RQR # _exptl.entry_id 1RQR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 149.211 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description METHIONINE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RQR _cell.length_a 76.184 _cell.length_b 129.923 _cell.length_c 183.872 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RQR _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? hexameric 6 author_defined_assembly 1 PISA,PQS hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L 1 1,2 A,B,C,D,E,F,G,H,I,J,K,L 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_456 x-1/2,-y+1/2,-z+1 1 0 0 0 -1 0 0 0 -1 -38.092 64.9615 183.872 3 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 76.184 0 91.936 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 13 A PHE 13 1_555 A N MSE 14 A MSE 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale2 A C MSE 14 A MSE 14 1_555 A N SER 15 A SER 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C LEU 30 A LEU 30 1_555 A N MSE 31 A MSE 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C MSE 31 A MSE 31 1_555 A N TYR 32 A TYR 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale5 A C SER 46 A SER 46 1_555 A N MSE 47 A MSE 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale6 A C MSE 47 A MSE 47 1_555 A N THR 48 A THR 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale7 A C GLU 160 A GLU 160 1_555 A N MSE 161 A MSE 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale8 A C MSE 161 A MSE 161 1_555 A N VAL 162 A VAL 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale9 A C GLY 291 A GLY 291 1_555 A N MSE 292 A MSE 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale10 A C MSE 292 A MSE 292 1_555 A N SER 293 A SER 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale11 B C PHE 13 B PHE 13 1_555 B N MSE 14 B MSE 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale12 B C MSE 14 B MSE 14 1_555 B N SER 15 B SER 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale13 B C LEU 30 B LEU 30 1_555 B N MSE 31 B MSE 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale14 B C MSE 31 B MSE 31 1_555 B N TYR 32 B TYR 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale15 B C SER 46 B SER 46 1_555 B N MSE 47 B MSE 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale16 B C MSE 47 B MSE 47 1_555 B N THR 48 B THR 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale17 B C GLU 160 B GLU 160 1_555 B N MSE 161 B MSE 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale18 B C MSE 161 B MSE 161 1_555 B N VAL 162 B VAL 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale19 B C GLY 291 B GLY 291 1_555 B N MSE 292 B MSE 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale20 B C MSE 292 B MSE 292 1_555 B N SER 293 B SER 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale21 C C PHE 13 C PHE 13 1_555 C N MSE 14 C MSE 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale22 C C MSE 14 C MSE 14 1_555 C N SER 15 C SER 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale23 C C LEU 30 C LEU 30 1_555 C N MSE 31 C MSE 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale24 C C MSE 31 C MSE 31 1_555 C N TYR 32 C TYR 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale25 C C SER 46 C SER 46 1_555 C N MSE 47 C MSE 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale26 C C MSE 47 C MSE 47 1_555 C N THR 48 C THR 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale27 C C GLU 160 C GLU 160 1_555 C N MSE 161 C MSE 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale28 C C MSE 161 C MSE 161 1_555 C N VAL 162 C VAL 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale29 C C GLY 291 C GLY 291 1_555 C N MSE 292 C MSE 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale30 C C MSE 292 C MSE 292 1_555 C N SER 293 C SER 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? # _chem_comp.formula 'C5 H11 N O2 S' _chem_comp.formula_weight 149.211 _chem_comp.id MET _chem_comp.mon_nstd_flag y _chem_comp.name METHIONINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA MET sing 251 n n N H MET sing 252 n n N H2 MET sing 253 n n CA C MET sing 254 n n CA CB MET sing 255 n n CA HA MET sing 256 n n C O MET doub 257 n n C OXT MET sing 258 n n CB CG MET sing 259 n n CB HB2 MET sing 260 n n CB HB3 MET sing 261 n n CG SD MET sing 262 n n CG HG2 MET sing 263 n n CG HG3 MET sing 264 n n SD CE MET sing 265 n n CE HE1 MET sing 266 n n CE HE2 MET sing 267 n n CE HE3 MET sing 268 n n OXT HXT MET sing 269 n n # _atom_sites.entry_id 1RQR _atom_sites.fract_transf_matrix[1][1] 0.013126 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007697 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005439 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 5FD A 1 500 500 5FD FDA . E 3 MET A 1 600 600 MET MET . F 2 5FD B 1 500 500 5FD FDA . G 3 MET B 1 600 600 MET MET . H 2 5FD C 1 500 500 5FD FDA . I 3 MET C 1 600 600 MET MET . J 4 HOH A 1 601 3 HOH HOH . J 4 HOH A 2 602 6 HOH HOH . J 4 HOH A 3 603 7 HOH HOH . J 4 HOH A 4 604 8 HOH HOH . J 4 HOH A 5 605 9 HOH HOH . J 4 HOH A 6 606 10 HOH HOH . J 4 HOH A 7 607 11 HOH HOH . J 4 HOH A 8 608 14 HOH HOH . J 4 HOH A 9 609 16 HOH HOH . J 4 HOH A 10 610 18 HOH HOH . J 4 HOH A 11 611 23 HOH HOH . J 4 HOH A 12 612 24 HOH HOH . J 4 HOH A 13 613 25 HOH HOH . J 4 HOH A 14 614 31 HOH HOH . J 4 HOH A 15 615 33 HOH HOH . J 4 HOH A 16 616 34 HOH HOH . J 4 HOH A 17 617 39 HOH HOH . J 4 HOH A 18 618 40 HOH HOH . J 4 HOH A 19 619 42 HOH HOH . J 4 HOH A 20 620 44 HOH HOH . J 4 HOH A 21 621 46 HOH HOH . J 4 HOH A 22 622 51 HOH HOH . J 4 HOH A 23 623 52 HOH HOH . J 4 HOH A 24 624 54 HOH HOH . J 4 HOH A 25 625 59 HOH HOH . J 4 HOH A 26 626 60 HOH HOH . J 4 HOH A 27 627 65 HOH HOH . J 4 HOH A 28 628 66 HOH HOH . J 4 HOH A 29 629 68 HOH HOH . J 4 HOH A 30 630 70 HOH HOH . J 4 HOH A 31 631 74 HOH HOH . J 4 HOH A 32 632 85 HOH HOH . J 4 HOH A 33 633 87 HOH HOH . J 4 HOH A 34 634 89 HOH HOH . J 4 HOH A 35 635 94 HOH HOH . J 4 HOH A 36 636 97 HOH HOH . J 4 HOH A 37 637 100 HOH HOH . J 4 HOH A 38 638 101 HOH HOH . J 4 HOH A 39 639 102 HOH HOH . J 4 HOH A 40 640 104 HOH HOH . J 4 HOH A 41 641 112 HOH HOH . J 4 HOH A 42 642 113 HOH HOH . J 4 HOH A 43 643 114 HOH HOH . J 4 HOH A 44 644 120 HOH HOH . J 4 HOH A 45 645 121 HOH HOH . J 4 HOH A 46 646 132 HOH HOH . J 4 HOH A 47 647 134 HOH HOH . J 4 HOH A 48 648 135 HOH HOH . J 4 HOH A 49 649 136 HOH HOH . J 4 HOH A 50 650 140 HOH HOH . J 4 HOH A 51 651 144 HOH HOH . J 4 HOH A 52 652 146 HOH HOH . J 4 HOH A 53 653 147 HOH HOH . J 4 HOH A 54 654 150 HOH HOH . J 4 HOH A 55 655 151 HOH HOH . J 4 HOH A 56 656 152 HOH HOH . J 4 HOH A 57 657 154 HOH HOH . K 4 HOH B 1 601 13 HOH HOH . K 4 HOH B 2 602 21 HOH HOH . K 4 HOH B 3 603 22 HOH HOH . K 4 HOH B 4 604 26 HOH HOH . K 4 HOH B 5 605 27 HOH HOH . K 4 HOH B 6 606 36 HOH HOH . K 4 HOH B 7 607 38 HOH HOH . K 4 HOH B 8 608 41 HOH HOH . K 4 HOH B 9 609 43 HOH HOH . K 4 HOH B 10 610 45 HOH HOH . K 4 HOH B 11 611 47 HOH HOH . K 4 HOH B 12 612 48 HOH HOH . K 4 HOH B 13 613 50 HOH HOH . K 4 HOH B 14 614 57 HOH HOH . K 4 HOH B 15 615 58 HOH HOH . K 4 HOH B 16 616 61 HOH HOH . K 4 HOH B 17 617 63 HOH HOH . K 4 HOH B 18 618 67 HOH HOH . K 4 HOH B 19 619 69 HOH HOH . K 4 HOH B 20 620 71 HOH HOH . K 4 HOH B 21 621 73 HOH HOH . K 4 HOH B 22 622 78 HOH HOH . K 4 HOH B 23 623 79 HOH HOH . K 4 HOH B 24 624 83 HOH HOH . K 4 HOH B 25 625 90 HOH HOH . K 4 HOH B 26 626 92 HOH HOH . K 4 HOH B 27 627 95 HOH HOH . K 4 HOH B 28 628 98 HOH HOH . K 4 HOH B 29 629 103 HOH HOH . K 4 HOH B 30 630 109 HOH HOH . K 4 HOH B 31 631 110 HOH HOH . K 4 HOH B 32 632 111 HOH HOH . K 4 HOH B 33 633 119 HOH HOH . K 4 HOH B 34 634 124 HOH HOH . K 4 HOH B 35 635 125 HOH HOH . K 4 HOH B 36 636 128 HOH HOH . K 4 HOH B 37 637 129 HOH HOH . K 4 HOH B 38 638 131 HOH HOH . K 4 HOH B 39 639 133 HOH HOH . K 4 HOH B 40 640 141 HOH HOH . K 4 HOH B 41 641 142 HOH HOH . K 4 HOH B 42 642 143 HOH HOH . K 4 HOH B 43 643 148 HOH HOH . K 4 HOH B 44 644 153 HOH HOH . K 4 HOH B 45 645 155 HOH HOH . K 4 HOH B 46 646 156 HOH HOH . K 4 HOH B 47 647 157 HOH HOH . K 4 HOH B 48 648 159 HOH HOH . L 4 HOH C 1 601 1 HOH HOH . L 4 HOH C 2 602 2 HOH HOH . L 4 HOH C 3 603 4 HOH HOH . L 4 HOH C 4 604 5 HOH HOH . L 4 HOH C 5 605 12 HOH HOH . L 4 HOH C 6 606 15 HOH HOH . L 4 HOH C 7 607 17 HOH HOH . L 4 HOH C 8 608 19 HOH HOH . L 4 HOH C 9 609 20 HOH HOH . L 4 HOH C 10 610 28 HOH HOH . L 4 HOH C 11 611 29 HOH HOH . L 4 HOH C 12 612 30 HOH HOH . L 4 HOH C 13 613 32 HOH HOH . L 4 HOH C 14 614 35 HOH HOH . L 4 HOH C 15 615 37 HOH HOH . L 4 HOH C 16 616 49 HOH HOH . L 4 HOH C 17 617 53 HOH HOH . L 4 HOH C 18 618 55 HOH HOH . L 4 HOH C 19 619 56 HOH HOH . L 4 HOH C 20 620 62 HOH HOH . L 4 HOH C 21 621 64 HOH HOH . L 4 HOH C 22 622 72 HOH HOH . L 4 HOH C 23 623 75 HOH HOH . L 4 HOH C 24 624 76 HOH HOH . L 4 HOH C 25 625 77 HOH HOH . L 4 HOH C 26 626 80 HOH HOH . L 4 HOH C 27 627 81 HOH HOH . L 4 HOH C 28 628 82 HOH HOH . L 4 HOH C 29 629 84 HOH HOH . L 4 HOH C 30 630 86 HOH HOH . L 4 HOH C 31 631 88 HOH HOH . L 4 HOH C 32 632 91 HOH HOH . L 4 HOH C 33 633 93 HOH HOH . L 4 HOH C 34 634 96 HOH HOH . L 4 HOH C 35 635 99 HOH HOH . L 4 HOH C 36 636 105 HOH HOH . L 4 HOH C 37 637 106 HOH HOH . L 4 HOH C 38 638 107 HOH HOH . L 4 HOH C 39 639 108 HOH HOH . L 4 HOH C 40 640 115 HOH HOH . L 4 HOH C 41 641 116 HOH HOH . L 4 HOH C 42 642 117 HOH HOH . L 4 HOH C 43 643 118 HOH HOH . L 4 HOH C 44 644 122 HOH HOH . L 4 HOH C 45 645 123 HOH HOH . L 4 HOH C 46 646 126 HOH HOH . L 4 HOH C 47 647 127 HOH HOH . L 4 HOH C 48 648 130 HOH HOH . L 4 HOH C 49 649 137 HOH HOH . L 4 HOH C 50 650 138 HOH HOH . L 4 HOH C 51 651 139 HOH HOH . L 4 HOH C 52 652 145 HOH HOH . L 4 HOH C 53 653 149 HOH HOH . L 4 HOH C 54 654 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N MET . . . G 3 47.926 35.763 69.236 1 50.67 ? N MET 600 B 1 HETATM 2 C CA MET . . . G 3 48.449 37.063 69.705 1 51.06 ? CA MET 600 B 1 HETATM 3 C C MET . . . G 3 49.539 36.866 70.76 1 50.9 ? C MET 600 B 1 HETATM 4 O O MET . . . G 3 49.43 35.943 71.555 1 51.28 ? O MET 600 B 1 HETATM 5 C CB MET . . . G 3 47.302 37.826 70.357 1 51.21 ? CB MET 600 B 1 HETATM 6 C CG MET . . . G 3 47.733 39.23 70.735 1 51.49 ? CG MET 600 B 1 HETATM 7 S SD MET . . . G 3 47.621 40.34 69.297 1 53.87 ? SD MET 600 B 1 HETATM 8 C CE MET . . . G 3 49.152 39.896 68.507 1 51.28 ? CE MET 600 B 1 HETATM 9 O OXT MET . . . G 3 50.512 37.613 70.848 1 50.64 ? OXT MET 600 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 9 #