data_1RRP # _model_server_result.job_id yaBQWADrjLF_RhiwJO4L7g _model_server_result.datetime_utc '2024-12-26 14:35:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rrp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":250}' # _entry.id 1RRP # _exptl.entry_id 1RRP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 135.78 _cell.angle_gamma 90 _cell.entry_id 1RRP _cell.length_a 121.339 _cell.length_b 139.463 _cell.length_c 91.654 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RRP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA octameric 8 software_defined_assembly 3 PISA tetrameric 4 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 A,B,C,D,E,F,G,H,I,J,K,L 3 1,2 A,B,E,F,I,J 4 1 C,D,G,H,K,L 4 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 55.653584 0 63.920903 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 17 A THR 24 1_555 E MG MG . A MG 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc2 A OG1 THR 35 A THR 42 1_555 E MG MG . A MG 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc3 F O2B GNP . A GNP 250 1_555 E MG MG . A MG 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? metalc ? metalc4 F O2G GNP . A GNP 250 1_555 E MG MG . A MG 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? metalc ? metalc5 C OG1 THR 17 C THR 24 1_555 G MG MG . C MG 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc6 C OG1 THR 35 C THR 42 1_555 G MG MG . C MG 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.717 ? metalc ? metalc7 H O2G GNP . C GNP 250 1_555 G MG MG . C MG 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.827 ? metalc ? metalc8 H O2B GNP . C GNP 250 1_555 G MG MG . C MG 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 1RRP _atom_sites.fract_transf_matrix[1][1] 0.008241 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008469 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00717 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015644 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG A 1 251 251 MG MG . F 4 GNP A 1 250 250 GNP GNP . G 3 MG C 1 251 251 MG MG . H 4 GNP C 1 250 250 GNP GNP . I 5 HOH A 1 450 450 HOH HOH . I 5 HOH A 2 455 455 HOH HOH . I 5 HOH A 3 462 462 HOH HOH . I 5 HOH A 4 464 464 HOH HOH . I 5 HOH A 5 471 471 HOH HOH . I 5 HOH A 6 472 472 HOH HOH . I 5 HOH A 7 481 481 HOH HOH . I 5 HOH A 8 482 482 HOH HOH . I 5 HOH A 9 484 484 HOH HOH . I 5 HOH A 10 485 485 HOH HOH . J 5 HOH B 1 452 452 HOH HOH . J 5 HOH B 2 453 453 HOH HOH . J 5 HOH B 3 460 460 HOH HOH . J 5 HOH B 4 461 461 HOH HOH . J 5 HOH B 5 465 465 HOH HOH . J 5 HOH B 6 468 468 HOH HOH . J 5 HOH B 7 469 469 HOH HOH . K 5 HOH C 1 454 454 HOH HOH . K 5 HOH C 2 456 456 HOH HOH . K 5 HOH C 3 463 463 HOH HOH . K 5 HOH C 4 470 470 HOH HOH . K 5 HOH C 5 473 473 HOH HOH . K 5 HOH C 6 475 475 HOH HOH . K 5 HOH C 7 476 476 HOH HOH . K 5 HOH C 8 477 477 HOH HOH . K 5 HOH C 9 479 479 HOH HOH . L 5 HOH D 1 451 451 HOH HOH . L 5 HOH D 2 457 457 HOH HOH . L 5 HOH D 3 458 458 HOH HOH . L 5 HOH D 4 459 459 HOH HOH . L 5 HOH D 5 466 466 HOH HOH . L 5 HOH D 6 467 467 HOH HOH . L 5 HOH D 7 474 474 HOH HOH . L 5 HOH D 8 478 478 HOH HOH . L 5 HOH D 9 480 480 HOH HOH . L 5 HOH D 10 483 483 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . F 4 19.236 -7.086 21.001 1 67.21 ? PG GNP 250 A 1 HETATM 2 O O1G GNP . . . F 4 20.255 -7.773 21.768 1 41.11 ? O1G GNP 250 A 1 HETATM 3 O O2G GNP . . . F 4 18.86 -5.813 21.644 1 54.87 ? O2G GNP 250 A 1 HETATM 4 O O3G GNP . . . F 4 17.985 -7.97 21.15 1 38.81 ? O3G GNP 250 A 1 HETATM 5 N N3B GNP . . . F 4 19.583 -6.971 19.423 1 50.16 ? N3B GNP 250 A 1 HETATM 6 P PB GNP . . . F 4 19.841 -5.54 18.684 1 40.58 ? PB GNP 250 A 1 HETATM 7 O O1B GNP . . . F 4 19.233 -5.437 17.374 1 38.66 ? O1B GNP 250 A 1 HETATM 8 O O2B GNP . . . F 4 19.556 -4.371 19.527 1 31.69 ? O2B GNP 250 A 1 HETATM 9 O O3A GNP . . . F 4 21.423 -5.491 18.418 1 14.34 ? O3A GNP 250 A 1 HETATM 10 P PA GNP . . . F 4 22.358 -4.216 18.059 1 36.86 ? PA GNP 250 A 1 HETATM 11 O O1A GNP . . . F 4 21.496 -3.021 17.856 1 56.56 ? O1A GNP 250 A 1 HETATM 12 O O2A GNP . . . F 4 23.5 -4.109 19.03 1 35.08 ? O2A GNP 250 A 1 HETATM 13 O O5' GNP . . . F 4 22.903 -4.71 16.626 1 35.74 ? O5' GNP 250 A 1 HETATM 14 C C5' GNP . . . F 4 24.093 -5.535 16.567 1 34.13 ? C5' GNP 250 A 1 HETATM 15 C C4' GNP . . . F 4 25.049 -5.037 15.478 1 26.38 ? C4' GNP 250 A 1 HETATM 16 O O4' GNP . . . F 4 24.302 -4.392 14.458 1 36.29 ? O4' GNP 250 A 1 HETATM 17 C C3' GNP . . . F 4 26.093 -4.02 15.971 1 29.98 ? C3' GNP 250 A 1 HETATM 18 O O3' GNP . . . F 4 27.391 -4.614 15.912 1 33.08 ? O3' GNP 250 A 1 HETATM 19 C C2' GNP . . . F 4 26 -2.862 14.937 1 35.02 ? C2' GNP 250 A 1 HETATM 20 O O2' GNP . . . F 4 27.298 -2.514 14.435 1 43.46 ? O2' GNP 250 A 1 HETATM 21 C C1' GNP . . . F 4 25.179 -3.487 13.81 1 47.33 ? C1' GNP 250 A 1 HETATM 22 N N9 GNP . . . F 4 24.396 -2.47 13.074 1 51.64 ? N9 GNP 250 A 1 HETATM 23 C C8 GNP . . . F 4 23.165 -1.912 13.409 1 64.41 ? C8 GNP 250 A 1 HETATM 24 N N7 GNP . . . F 4 22.439 -1.555 12.405 1 67.36 ? N7 GNP 250 A 1 HETATM 25 C C5 GNP . . . F 4 23.313 -1.676 11.31 1 50.82 ? C5 GNP 250 A 1 HETATM 26 C C6 GNP . . . F 4 23.157 -1.351 9.891 1 60.35 ? C6 GNP 250 A 1 HETATM 27 O O6 GNP . . . F 4 22.264 -0.703 9.325 1 58.98 ? O6 GNP 250 A 1 HETATM 28 N N1 GNP . . . F 4 24.201 -1.88 9.123 1 51.8 ? N1 GNP 250 A 1 HETATM 29 C C2 GNP . . . F 4 25.45 -2.151 9.622 1 62.72 ? C2 GNP 250 A 1 HETATM 30 N N2 GNP . . . F 4 26.514 -2.104 8.797 1 65.35 ? N2 GNP 250 A 1 HETATM 31 N N3 GNP . . . F 4 25.644 -2.446 10.951 1 48.86 ? N3 GNP 250 A 1 HETATM 32 C C4 GNP . . . F 4 24.529 -2.212 11.727 1 48.21 ? C4 GNP 250 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #