data_1RRP
#
_model_server_result.job_id            Ti8pKcWSEeA8H4rCFcx4ow 
_model_server_result.datetime_utc      '2024-12-26 14:35:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1rrp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":250}' 
#
_entry.id    1RRP 
#
_exptl.entry_id    1RRP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              522.196 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          135.78 
_cell.angle_gamma         90 
_cell.entry_id            1RRP 
_cell.length_a            121.339 
_cell.length_b            139.463 
_cell.length_c            91.654 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1RRP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA octameric 8 software_defined_assembly 3 
PISA tetrameric 4 software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I,J 1 1 
C,D,G,H,K,L 2 1 
A,B,C,D,E,F,G,H,I,J,K,L 3 1,2 
A,B,E,F,I,J 4 1 
C,D,G,H,K,L 4 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 55.653584 0 63.920903 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 17 A THR 24 1_555 E MG MG . A MG 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? 
metalc ? metalc2 A OG1 THR 35 A THR 42 1_555 E MG MG . A MG 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? 
metalc ? metalc3 F O2B GNP . A GNP 250 1_555 E MG MG . A MG 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? 
metalc ? metalc4 F O2G GNP . A GNP 250 1_555 E MG MG . A MG 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? 
metalc ? metalc5 C OG1 THR 17 C THR 24 1_555 G MG MG . C MG 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? 
metalc ? metalc6 C OG1 THR 35 C THR 42 1_555 G MG MG . C MG 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.717 ? 
metalc ? metalc7 H O2G GNP . C GNP 250 1_555 G MG MG . C MG 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.827 ? 
metalc ? metalc8 H O2B GNP . C GNP 250 1_555 G MG MG . C MG 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? 
#
_chem_comp.formula           'C10 H17 N6 O13 P3' 
_chem_comp.formula_weight    522.196 
_chem_comp.id                GNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GNP doub 129 n n 
PG O2G GNP sing 130 n n 
PG O3G GNP sing 131 n n 
PG N3B GNP sing 132 n n 
O2G HOG2 GNP sing 133 n n 
O3G HOG3 GNP sing 134 n n 
N3B PB GNP sing 135 n n 
N3B HNB3 GNP sing 136 n n 
PB O1B GNP doub 137 n n 
PB O2B GNP sing 138 n n 
PB O3A GNP sing 139 n n 
O2B HOB2 GNP sing 140 n n 
O3A PA GNP sing 141 n n 
PA O1A GNP doub 142 n n 
PA O2A GNP sing 143 n n 
PA O5' GNP sing 144 n n 
O2A HOA2 GNP sing 145 n n 
O5' C5' GNP sing 146 n n 
C5' C4' GNP sing 147 n n 
C5' "H5'2" GNP sing 148 n n 
C5' "H5'1" GNP sing 149 n n 
C4' O4' GNP sing 150 n n 
C4' C3' GNP sing 151 n n 
C4' H4' GNP sing 152 n n 
O4' C1' GNP sing 153 n n 
C3' O3' GNP sing 154 n n 
C3' C2' GNP sing 155 n n 
C3' H3' GNP sing 156 n n 
O3' HO3' GNP sing 157 n n 
C2' O2' GNP sing 158 n n 
C2' C1' GNP sing 159 n n 
C2' H2' GNP sing 160 n n 
O2' HO2' GNP sing 161 n n 
C1' N9 GNP sing 162 n n 
C1' H1' GNP sing 163 n n 
N9 C8 GNP sing 164 n y 
N9 C4 GNP sing 165 n y 
C8 N7 GNP doub 166 n y 
C8 H8 GNP sing 167 n n 
N7 C5 GNP sing 168 n y 
C5 C6 GNP sing 169 n y 
C5 C4 GNP doub 170 n y 
C6 O6 GNP doub 171 n n 
C6 N1 GNP sing 172 n y 
N1 C2 GNP sing 173 n y 
N1 HN1 GNP sing 174 n n 
C2 N2 GNP sing 175 n n 
C2 N3 GNP doub 176 n y 
N2 HN21 GNP sing 177 n n 
N2 HN22 GNP sing 178 n n 
N3 C4 GNP sing 179 n y 
#
_atom_sites.entry_id                     1RRP 
_atom_sites.fract_transf_matrix[1][1]    0.008241 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.008469 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00717 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015644 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 MG A 1 251 251 MG MG . 
F 4 GNP A 1 250 250 GNP GNP . 
G 3 MG C 1 251 251 MG MG . 
H 4 GNP C 1 250 250 GNP GNP . 
I 5 HOH A 1 450 450 HOH HOH . 
I 5 HOH A 2 455 455 HOH HOH . 
I 5 HOH A 3 462 462 HOH HOH . 
I 5 HOH A 4 464 464 HOH HOH . 
I 5 HOH A 5 471 471 HOH HOH . 
I 5 HOH A 6 472 472 HOH HOH . 
I 5 HOH A 7 481 481 HOH HOH . 
I 5 HOH A 8 482 482 HOH HOH . 
I 5 HOH A 9 484 484 HOH HOH . 
I 5 HOH A 10 485 485 HOH HOH . 
J 5 HOH B 1 452 452 HOH HOH . 
J 5 HOH B 2 453 453 HOH HOH . 
J 5 HOH B 3 460 460 HOH HOH . 
J 5 HOH B 4 461 461 HOH HOH . 
J 5 HOH B 5 465 465 HOH HOH . 
J 5 HOH B 6 468 468 HOH HOH . 
J 5 HOH B 7 469 469 HOH HOH . 
K 5 HOH C 1 454 454 HOH HOH . 
K 5 HOH C 2 456 456 HOH HOH . 
K 5 HOH C 3 463 463 HOH HOH . 
K 5 HOH C 4 470 470 HOH HOH . 
K 5 HOH C 5 473 473 HOH HOH . 
K 5 HOH C 6 475 475 HOH HOH . 
K 5 HOH C 7 476 476 HOH HOH . 
K 5 HOH C 8 477 477 HOH HOH . 
K 5 HOH C 9 479 479 HOH HOH . 
L 5 HOH D 1 451 451 HOH HOH . 
L 5 HOH D 2 457 457 HOH HOH . 
L 5 HOH D 3 458 458 HOH HOH . 
L 5 HOH D 4 459 459 HOH HOH . 
L 5 HOH D 5 466 466 HOH HOH . 
L 5 HOH D 6 467 467 HOH HOH . 
L 5 HOH D 7 474 474 HOH HOH . 
L 5 HOH D 8 478 478 HOH HOH . 
L 5 HOH D 9 480 480 HOH HOH . 
L 5 HOH D 10 483 483 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GNP . . . H 4 17.058 -6.543 44.793 1 58.26 ? PG GNP 250 C 1 
HETATM 2 O O1G GNP . . . H 4 18.213 -5.936 44.133 1 50.1 ? O1G GNP 250 C 1 
HETATM 3 O O2G GNP . . . H 4 16.701 -7.816 44.16 1 57.38 ? O2G GNP 250 C 1 
HETATM 4 O O3G GNP . . . H 4 15.881 -5.614 44.464 1 41.47 ? O3G GNP 250 C 1 
HETATM 5 N N3B GNP . . . H 4 17.183 -6.624 46.394 1 53.72 ? N3B GNP 250 C 1 
HETATM 6 P PB GNP . . . H 4 17.254 -8.044 47.203 1 46.37 ? PB GNP 250 C 1 
HETATM 7 O O1B GNP . . . H 4 16.479 -8.069 48.434 1 14.76 ? O1B GNP 250 C 1 
HETATM 8 O O2B GNP . . . H 4 17.03 -9.22 46.375 1 42.99 ? O2B GNP 250 C 1 
HETATM 9 O O3A GNP . . . H 4 18.775 -8.154 47.674 1 25.68 ? O3A GNP 250 C 1 
HETATM 10 P PA GNP . . . H 4 19.577 -9.439 48.228 1 49.1 ? PA GNP 250 C 1 
HETATM 11 O O1A GNP . . . H 4 18.631 -10.564 48.348 1 27.9 ? O1A GNP 250 C 1 
HETATM 12 O O2A GNP . . . H 4 20.84 -9.639 47.425 1 9.94 ? O2A GNP 250 C 1 
HETATM 13 O O5' GNP . . . H 4 19.947 -8.896 49.721 1 24.19 ? O5' GNP 250 C 1 
HETATM 14 C C5' GNP . . . H 4 21.178 -8.145 49.902 1 17.87 ? C5' GNP 250 C 1 
HETATM 15 C C4' GNP . . . H 4 21.953 -8.622 51.126 1 25.54 ? C4' GNP 250 C 1 
HETATM 16 O O4' GNP . . . H 4 21.05 -9.173 52.07 1 36.38 ? O4' GNP 250 C 1 
HETATM 17 C C3' GNP . . . H 4 23 -9.706 50.817 1 33.97 ? C3' GNP 250 C 1 
HETATM 18 O O3' GNP . . . H 4 24.312 -9.176 51.008 1 44.5 ? O3' GNP 250 C 1 
HETATM 19 C C2' GNP . . . H 4 22.72 -10.802 51.886 1 43.77 ? C2' GNP 250 C 1 
HETATM 20 O O2' GNP . . . H 4 23.926 -11.166 52.579 1 49.98 ? O2' GNP 250 C 1 
HETATM 21 C C1' GNP . . . H 4 21.777 -10.094 52.864 1 36.97 ? C1' GNP 250 C 1 
HETATM 22 N N9 GNP . . . H 4 20.845 -11.044 53.512 1 44.55 ? N9 GNP 250 C 1 
HETATM 23 C C8 GNP . . . H 4 19.649 -11.561 53.027 1 51.54 ? C8 GNP 250 C 1 
HETATM 24 N N7 GNP . . . H 4 18.773 -11.852 53.932 1 66.46 ? N7 GNP 250 C 1 
HETATM 25 C C5 GNP . . . H 4 19.49 -11.726 55.131 1 49.82 ? C5 GNP 250 C 1 
HETATM 26 C C6 GNP . . . H 4 19.121 -11.98 56.517 1 52.46 ? C6 GNP 250 C 1 
HETATM 27 O O6 GNP . . . H 4 18.13 -12.549 56.967 1 62.76 ? O6 GNP 250 C 1 
HETATM 28 N N1 GNP . . . H 4 20.074 -11.482 57.404 1 55.27 ? N1 GNP 250 C 1 
HETATM 29 C C2 GNP . . . H 4 21.397 -11.299 57.079 1 61.26 ? C2 GNP 250 C 1 
HETATM 30 N N2 GNP . . . H 4 22.333 -11.366 58.049 1 61.88 ? N2 GNP 250 C 1 
HETATM 31 N N3 GNP . . . H 4 21.793 -11.071 55.782 1 54.85 ? N3 GNP 250 C 1 
HETATM 32 C C4 GNP . . . H 4 20.781 -11.268 54.869 1 48.08 ? C4 GNP 250 C 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           32 
#