data_1RS0 # _model_server_result.job_id T-5LWFOunje0g_hsFHw-EQ _model_server_result.datetime_utc '2024-11-25 13:31:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rs0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":750}' # _entry.id 1RS0 # _exptl.entry_id 1RS0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 166.155 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIISOPROPYL PHOSPHONATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1RS0 _cell.length_a 98.449 _cell.length_b 98.449 _cell.length_c 125.678 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RS0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 186 A CYS 428 1_555 A SG CYS 193 A CYS 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 211 A CYS 453 1_555 A SG CYS 329 A CYS 571 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf3 A SG CYS 244 A CYS 486 1_555 A SG CYS 260 A CYS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 A SG CYS 332 A CYS 574 1_555 A SG CYS 348 A CYS 590 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 A SG CYS 389 A CYS 631 1_555 A SG CYS 415 A CYS 657 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf6 A SG CYS 428 A CYS 670 1_555 A SG CYS 458 A CYS 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A OG SER 432 A SER 674 1_555 L P DFP . A DFP 750 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.594 ? metalc ? metalc1 A OG SER 11 A SER 253 1_555 K MG MG . A MG 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc2 A OG SER 13 A SER 255 1_555 K MG MG . A MG 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc3 A O LYS 81 A LYS 323 6_665 J NA NA . A NA 748 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc4 A OG1 THR 86 A THR 328 1_555 K MG MG . A MG 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc5 K MG MG . A MG 749 1_555 M O HOH . A HOH 945 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc6 K MG MG . A MG 749 1_555 M O HOH . A HOH 946 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? # _chem_comp.formula 'C6 H15 O3 P' _chem_comp.formula_weight 166.155 _chem_comp.id DFP _chem_comp.mon_nstd_flag . _chem_comp.name 'DIISOPROPYL PHOSPHONATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DFP sing 83 n n C1 C3 DFP sing 84 n n C1 O1P DFP sing 85 n n C1 H1 DFP sing 86 n n C2 H21 DFP sing 87 n n C2 H22 DFP sing 88 n n C2 H23 DFP sing 89 n n C3 H31 DFP sing 90 n n C3 H32 DFP sing 91 n n C3 H33 DFP sing 92 n n C1' C2' DFP sing 93 n n C1' C3' DFP sing 94 n n C1' O2P DFP sing 95 n n C1' H1' DFP sing 96 n n C2' "H2'1" DFP sing 97 n n C2' "H2'2" DFP sing 98 n n C2' "H2'3" DFP sing 99 n n C3' "H3'1" DFP sing 100 n n C3' "H3'2" DFP sing 101 n n C3' "H3'3" DFP sing 102 n n P O1P DFP sing 103 n n P O2P DFP sing 104 n n P O3P DFP doub 105 n n HP1 P DFP sing 106 n n # _atom_sites.entry_id 1RS0 _atom_sites.fract_transf_matrix[1][1] 0.010158 _atom_sites.fract_transf_matrix[1][2] 0.005864 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011729 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007957 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD A 1 740 100 IOD I . C 2 IOD A 1 741 101 IOD I . D 3 NA A 1 742 100 NA NA . E 3 NA A 1 743 101 NA NA . F 3 NA A 1 744 102 NA NA . G 3 NA A 1 745 103 NA NA . H 3 NA A 1 746 104 NA NA . I 3 NA A 1 747 105 NA NA . J 3 NA A 1 748 106 NA NA . K 4 MG A 1 749 100 MG MG2 . L 5 DFP A 1 750 674 DFP DIP . M 6 HOH A 1 751 101 HOH TIP . M 6 HOH A 2 752 102 HOH TIP . M 6 HOH A 3 753 103 HOH TIP . M 6 HOH A 4 754 104 HOH TIP . M 6 HOH A 5 755 105 HOH TIP . M 6 HOH A 6 756 106 HOH TIP . M 6 HOH A 7 757 107 HOH TIP . M 6 HOH A 8 758 108 HOH TIP . M 6 HOH A 9 759 109 HOH TIP . M 6 HOH A 10 760 110 HOH TIP . M 6 HOH A 11 761 111 HOH TIP . M 6 HOH A 12 762 112 HOH TIP . M 6 HOH A 13 763 113 HOH TIP . M 6 HOH A 14 764 114 HOH TIP . M 6 HOH A 15 765 115 HOH TIP . M 6 HOH A 16 766 116 HOH TIP . M 6 HOH A 17 767 117 HOH TIP . M 6 HOH A 18 768 118 HOH TIP . M 6 HOH A 19 769 119 HOH TIP . M 6 HOH A 20 770 120 HOH TIP . M 6 HOH A 21 771 121 HOH TIP . M 6 HOH A 22 772 122 HOH TIP . M 6 HOH A 23 773 123 HOH TIP . M 6 HOH A 24 774 124 HOH TIP . M 6 HOH A 25 775 125 HOH TIP . M 6 HOH A 26 776 126 HOH TIP . M 6 HOH A 27 777 127 HOH TIP . M 6 HOH A 28 778 128 HOH TIP . M 6 HOH A 29 779 129 HOH TIP . M 6 HOH A 30 780 130 HOH TIP . M 6 HOH A 31 781 131 HOH TIP . M 6 HOH A 32 782 132 HOH TIP . M 6 HOH A 33 783 133 HOH TIP . M 6 HOH A 34 784 134 HOH TIP . M 6 HOH A 35 785 135 HOH TIP . M 6 HOH A 36 786 136 HOH TIP . M 6 HOH A 37 787 137 HOH TIP . M 6 HOH A 38 788 138 HOH TIP . M 6 HOH A 39 789 139 HOH TIP . M 6 HOH A 40 790 140 HOH TIP . M 6 HOH A 41 791 141 HOH TIP . M 6 HOH A 42 792 142 HOH TIP . M 6 HOH A 43 793 143 HOH TIP . M 6 HOH A 44 794 144 HOH TIP . M 6 HOH A 45 795 145 HOH TIP . M 6 HOH A 46 796 146 HOH TIP . M 6 HOH A 47 797 147 HOH TIP . M 6 HOH A 48 798 148 HOH TIP . M 6 HOH A 49 799 149 HOH TIP . M 6 HOH A 50 800 150 HOH TIP . M 6 HOH A 51 801 151 HOH TIP . M 6 HOH A 52 802 152 HOH TIP . M 6 HOH A 53 803 153 HOH TIP . M 6 HOH A 54 804 154 HOH TIP . M 6 HOH A 55 805 155 HOH TIP . M 6 HOH A 56 806 156 HOH TIP . M 6 HOH A 57 807 157 HOH TIP . M 6 HOH A 58 808 158 HOH TIP . M 6 HOH A 59 809 159 HOH TIP . M 6 HOH A 60 810 160 HOH TIP . M 6 HOH A 61 811 161 HOH TIP . M 6 HOH A 62 812 162 HOH TIP . M 6 HOH A 63 813 163 HOH TIP . M 6 HOH A 64 814 164 HOH TIP . M 6 HOH A 65 815 165 HOH TIP . M 6 HOH A 66 816 166 HOH TIP . M 6 HOH A 67 817 167 HOH TIP . M 6 HOH A 68 818 168 HOH TIP . M 6 HOH A 69 819 169 HOH TIP . M 6 HOH A 70 820 170 HOH TIP . M 6 HOH A 71 821 171 HOH TIP . M 6 HOH A 72 822 172 HOH TIP . M 6 HOH A 73 823 173 HOH TIP . M 6 HOH A 74 824 174 HOH TIP . M 6 HOH A 75 825 175 HOH TIP . M 6 HOH A 76 826 176 HOH TIP . M 6 HOH A 77 827 177 HOH TIP . M 6 HOH A 78 828 178 HOH TIP . M 6 HOH A 79 829 179 HOH TIP . M 6 HOH A 80 830 180 HOH TIP . M 6 HOH A 81 831 181 HOH TIP . M 6 HOH A 82 832 182 HOH TIP . M 6 HOH A 83 833 183 HOH TIP . M 6 HOH A 84 834 184 HOH TIP . M 6 HOH A 85 835 185 HOH TIP . M 6 HOH A 86 836 186 HOH TIP . M 6 HOH A 87 837 187 HOH TIP . M 6 HOH A 88 838 188 HOH TIP . M 6 HOH A 89 839 189 HOH TIP . M 6 HOH A 90 840 190 HOH TIP . M 6 HOH A 91 841 191 HOH TIP . M 6 HOH A 92 842 192 HOH TIP . M 6 HOH A 93 843 193 HOH TIP . M 6 HOH A 94 844 194 HOH TIP . M 6 HOH A 95 845 195 HOH TIP . M 6 HOH A 96 846 196 HOH TIP . M 6 HOH A 97 847 197 HOH TIP . M 6 HOH A 98 848 198 HOH TIP . M 6 HOH A 99 849 199 HOH TIP . M 6 HOH A 100 850 200 HOH TIP . M 6 HOH A 101 851 201 HOH TIP . M 6 HOH A 102 852 202 HOH TIP . M 6 HOH A 103 853 203 HOH TIP . M 6 HOH A 104 854 204 HOH TIP . M 6 HOH A 105 855 205 HOH TIP . M 6 HOH A 106 856 206 HOH TIP . M 6 HOH A 107 857 207 HOH TIP . M 6 HOH A 108 858 208 HOH TIP . M 6 HOH A 109 859 209 HOH TIP . M 6 HOH A 110 860 210 HOH TIP . M 6 HOH A 111 861 211 HOH TIP . M 6 HOH A 112 862 212 HOH TIP . M 6 HOH A 113 863 213 HOH TIP . M 6 HOH A 114 864 214 HOH TIP . M 6 HOH A 115 865 215 HOH TIP . M 6 HOH A 116 866 216 HOH TIP . M 6 HOH A 117 867 217 HOH TIP . M 6 HOH A 118 868 218 HOH TIP . M 6 HOH A 119 869 219 HOH TIP . M 6 HOH A 120 870 220 HOH TIP . M 6 HOH A 121 871 221 HOH TIP . M 6 HOH A 122 872 222 HOH TIP . M 6 HOH A 123 873 223 HOH TIP . M 6 HOH A 124 874 224 HOH TIP . M 6 HOH A 125 875 225 HOH TIP . M 6 HOH A 126 876 226 HOH TIP . M 6 HOH A 127 877 227 HOH TIP . M 6 HOH A 128 878 228 HOH TIP . M 6 HOH A 129 879 229 HOH TIP . M 6 HOH A 130 880 230 HOH TIP . M 6 HOH A 131 881 231 HOH TIP . M 6 HOH A 132 882 232 HOH TIP . M 6 HOH A 133 883 233 HOH TIP . M 6 HOH A 134 884 234 HOH TIP . M 6 HOH A 135 885 235 HOH TIP . M 6 HOH A 136 886 236 HOH TIP . M 6 HOH A 137 887 237 HOH TIP . M 6 HOH A 138 888 238 HOH TIP . M 6 HOH A 139 889 239 HOH TIP . M 6 HOH A 140 890 240 HOH TIP . M 6 HOH A 141 891 241 HOH TIP . M 6 HOH A 142 892 242 HOH TIP . M 6 HOH A 143 893 243 HOH TIP . M 6 HOH A 144 894 244 HOH TIP . M 6 HOH A 145 895 245 HOH TIP . M 6 HOH A 146 896 246 HOH TIP . M 6 HOH A 147 897 247 HOH TIP . M 6 HOH A 148 898 248 HOH TIP . M 6 HOH A 149 899 249 HOH TIP . M 6 HOH A 150 900 250 HOH TIP . M 6 HOH A 151 901 251 HOH TIP . M 6 HOH A 152 902 252 HOH TIP . M 6 HOH A 153 903 253 HOH TIP . M 6 HOH A 154 904 255 HOH TIP . M 6 HOH A 155 905 256 HOH TIP . M 6 HOH A 156 906 257 HOH TIP . M 6 HOH A 157 907 258 HOH TIP . M 6 HOH A 158 908 259 HOH TIP . M 6 HOH A 159 909 260 HOH TIP . M 6 HOH A 160 910 261 HOH TIP . M 6 HOH A 161 911 263 HOH TIP . M 6 HOH A 162 912 264 HOH TIP . M 6 HOH A 163 913 265 HOH TIP . M 6 HOH A 164 914 266 HOH TIP . M 6 HOH A 165 915 267 HOH TIP . M 6 HOH A 166 916 268 HOH TIP . M 6 HOH A 167 917 269 HOH TIP . M 6 HOH A 168 918 271 HOH TIP . M 6 HOH A 169 919 272 HOH TIP . M 6 HOH A 170 920 273 HOH TIP . M 6 HOH A 171 921 274 HOH TIP . M 6 HOH A 172 922 275 HOH TIP . M 6 HOH A 173 923 276 HOH TIP . M 6 HOH A 174 924 278 HOH TIP . M 6 HOH A 175 925 279 HOH TIP . M 6 HOH A 176 926 280 HOH TIP . M 6 HOH A 177 927 281 HOH TIP . M 6 HOH A 178 928 282 HOH TIP . M 6 HOH A 179 929 283 HOH TIP . M 6 HOH A 180 930 284 HOH TIP . M 6 HOH A 181 931 285 HOH TIP . M 6 HOH A 182 932 286 HOH TIP . M 6 HOH A 183 933 287 HOH TIP . M 6 HOH A 184 934 288 HOH TIP . M 6 HOH A 185 935 289 HOH TIP . M 6 HOH A 186 936 290 HOH TIP . M 6 HOH A 187 937 291 HOH TIP . M 6 HOH A 188 938 292 HOH TIP . M 6 HOH A 189 939 293 HOH TIP . M 6 HOH A 190 940 294 HOH TIP . M 6 HOH A 191 941 295 HOH TIP . M 6 HOH A 192 942 296 HOH TIP . M 6 HOH A 193 943 297 HOH TIP . M 6 HOH A 194 944 298 HOH TIP . M 6 HOH A 195 945 299 HOH TIP . M 6 HOH A 196 946 300 HOH TIP . M 6 HOH A 197 947 301 HOH TIP . M 6 HOH A 198 948 302 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DFP . . . L 5 2.087 35.718 -0.432 1 44.43 ? C1 DFP 750 A 1 HETATM 2 C C2 DFP . . . L 5 2.047 37.261 -0.768 1 43.72 ? C2 DFP 750 A 1 HETATM 3 C C3 DFP . . . L 5 3.544 35.077 -0.448 1 42.98 ? C3 DFP 750 A 1 HETATM 4 C C1' DFP . . . L 5 -0.494 33.204 -3.339 1 38.4 ? C1' DFP 750 A 1 HETATM 5 C C2' DFP . . . L 5 -0.293 32.616 -4.76 1 38.68 ? C2' DFP 750 A 1 HETATM 6 C C3' DFP . . . L 5 -1.885 32.825 -2.817 1 36.44 ? C3' DFP 750 A 1 HETATM 7 P P DFP . . . L 5 0.048 35.638 -2.144 1 42.57 ? P DFP 750 A 1 HETATM 8 O O1P DFP . . . L 5 1.215 34.958 -1.325 1 44.09 ? O1P DFP 750 A 1 HETATM 9 O O2P DFP . . . L 5 -0.325 34.752 -3.454 1 41.92 ? O2P DFP 750 A 1 HETATM 10 O O3P DFP . . . L 5 0.498 37.061 -2.705 1 43.85 ? O3P DFP 750 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #