data_1RSD # _model_server_result.job_id XheQrOfkgfu8wTEsv3AQBg _model_server_result.datetime_utc '2025-03-21 09:40:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rsd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 1RSD # _exptl.entry_id 1RSD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 499.544 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(5-AMINO-7-HYDROXY-[1,2,3]TRIAZOLO[4,5-D]PYRIMIDIN-2-YL)-N-[2-(2-(HYDROXYMETHYL-PHENYLSULFANYL)-BENZYL]-BENZAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RSD _cell.length_a 60.9 _cell.length_b 60.9 _cell.length_c 123.4 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RSD _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 60.9 60.9 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 60.9 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 60.9 0 5 'crystal symmetry operation' 5_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 60.9 0 123.4 6 'crystal symmetry operation' 6_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 60.9 123.4 7 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 123.4 8 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+1 0 -1 0 -1 0 0 0 0 -1 60.9 60.9 123.4 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H21 N7 O3 S' _chem_comp.formula_weight 499.544 _chem_comp.id PSB _chem_comp.mon_nstd_flag . _chem_comp.name 3-(5-AMINO-7-HYDROXY-[1,2,3]TRIAZOLO[4,5-D]PYRIMIDIN-2-YL)-N-[2-(2-(HYDROXYMETHYL-PHENYLSULFANYL)-BENZYL]-BENZAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PSB sing 262 n n N1 HN11 PSB sing 263 n n N1 HN12 PSB sing 264 n n C2 N3 PSB sing 265 n y C2 N11 PSB doub 266 n y N3 C4 PSB doub 267 n y C4 O5 PSB sing 268 n n C4 C6 PSB sing 269 n y O5 HO5 PSB sing 270 n n C6 N7 PSB doub 271 n y C6 C10 PSB sing 272 n y N7 N8 PSB sing 273 n y N8 N9 PSB sing 274 n y N8 C12 PSB sing 275 n y N9 C10 PSB doub 276 n y C10 N11 PSB sing 277 n y C12 C13 PSB sing 278 n y C12 C17 PSB doub 279 n y C13 C14 PSB doub 280 n y C13 H13 PSB sing 281 n n C14 C15 PSB sing 282 n y C14 H14 PSB sing 283 n n C15 C16 PSB doub 284 n y C15 H15 PSB sing 285 n n C16 C17 PSB sing 286 n y C16 C18 PSB sing 287 n n C17 H17 PSB sing 288 n n C18 O19 PSB doub 289 n n C18 N20 PSB sing 290 n n N20 C21 PSB sing 291 n n N20 H20 PSB sing 292 n n C21 C22 PSB sing 293 n n C21 H211 PSB sing 294 n n C21 H212 PSB sing 295 n n C22 C23 PSB doub 296 n y C22 C27 PSB sing 297 n y C23 C24 PSB sing 298 n y C23 H23 PSB sing 299 n n C24 C25 PSB doub 300 n y C24 H24 PSB sing 301 n n C25 C26 PSB sing 302 n y C25 H25 PSB sing 303 n n C26 C27 PSB doub 304 n y C26 H26 PSB sing 305 n n C27 S28 PSB sing 306 n n S28 C29 PSB sing 307 n n C29 C30 PSB doub 308 n y C29 C34 PSB sing 309 n y C30 C31 PSB sing 310 n y C30 H30 PSB sing 311 n n C31 C32 PSB doub 312 n y C31 H31 PSB sing 313 n n C32 C33 PSB sing 314 n y C32 H32 PSB sing 315 n n C33 C34 PSB doub 316 n y C33 H33 PSB sing 317 n n C34 C35 PSB sing 318 n n C35 O36 PSB sing 319 n n C35 H351 PSB sing 320 n n C35 H352 PSB sing 321 n n O36 H36 PSB sing 322 n n # _atom_sites.entry_id 1RSD _atom_sites.fract_transf_matrix[1][1] 0.01642 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01642 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008104 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id PSB _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1001 _pdbx_nonpoly_scheme.auth_seq_num 1001 _pdbx_nonpoly_scheme.pdb_mon_id PSB _pdbx_nonpoly_scheme.auth_mon_id LIG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PSB . . . B 2 48.243 44.685 78.785 1 51.58 ? N1 PSB 1001 A 1 HETATM 2 C C2 PSB . . . B 2 48.317 45.417 77.47 1 49.94 ? C2 PSB 1001 A 1 HETATM 3 N N3 PSB . . . B 2 47.304 46.317 77.112 1 48.92 ? N3 PSB 1001 A 1 HETATM 4 C C4 PSB . . . B 2 47.347 47.062 75.927 1 47.2 ? C4 PSB 1001 A 1 HETATM 5 O O5 PSB . . . B 2 46.391 47.858 75.695 1 41.23 ? O5 PSB 1001 A 1 HETATM 6 C C6 PSB . . . B 2 48.513 46.933 74.966 1 49.68 ? C6 PSB 1001 A 1 HETATM 7 N N7 PSB . . . B 2 48.981 47.478 73.675 1 52.52 ? N7 PSB 1001 A 1 HETATM 8 N N8 PSB . . . B 2 50.214 46.767 73.542 1 54.99 ? N8 PSB 1001 A 1 HETATM 9 N N9 PSB . . . B 2 50.326 45.927 74.674 1 50.91 ? N9 PSB 1001 A 1 HETATM 10 C C10 PSB . . . B 2 49.497 45.972 75.405 1 49.45 ? C10 PSB 1001 A 1 HETATM 11 N N11 PSB . . . B 2 49.347 45.257 76.677 1 49.84 ? N11 PSB 1001 A 1 HETATM 12 C C12 PSB . . . B 2 51.203 46.787 72.669 1 56.31 ? C12 PSB 1001 A 1 HETATM 13 C C13 PSB . . . B 2 52.173 47.828 72.771 1 57.64 ? C13 PSB 1001 A 1 HETATM 14 C C14 PSB . . . B 2 53.354 47.716 71.993 1 59.41 ? C14 PSB 1001 A 1 HETATM 15 C C15 PSB . . . B 2 53.524 46.566 71.166 1 61.09 ? C15 PSB 1001 A 1 HETATM 16 C C16 PSB . . . B 2 52.472 45.559 71.053 1 60.32 ? C16 PSB 1001 A 1 HETATM 17 C C17 PSB . . . B 2 51.317 45.732 71.823 1 57.72 ? C17 PSB 1001 A 1 HETATM 18 C C18 PSB . . . B 2 52.611 44.354 70.309 1 60.17 ? C18 PSB 1001 A 1 HETATM 19 O O19 PSB . . . B 2 51.639 43.508 70.14 1 59.77 ? O19 PSB 1001 A 1 HETATM 20 N N20 PSB . . . B 2 53.735 44.052 70.04 1 60.79 ? N20 PSB 1001 A 1 HETATM 21 C C21 PSB . . . B 2 53.769 42.59 69.676 1 61.93 ? C21 PSB 1001 A 1 HETATM 22 C C22 PSB . . . B 2 55.112 42.014 70.129 1 63.72 ? C22 PSB 1001 A 1 HETATM 23 C C23 PSB . . . B 2 55.329 42.432 71.576 1 62.37 ? C23 PSB 1001 A 1 HETATM 24 C C24 PSB . . . B 2 56.421 41.982 72.349 1 60.94 ? C24 PSB 1001 A 1 HETATM 25 C C25 PSB . . . B 2 57.348 41.154 71.814 1 62.78 ? C25 PSB 1001 A 1 HETATM 26 C C26 PSB . . . B 2 57.211 40.74 70.434 1 67.28 ? C26 PSB 1001 A 1 HETATM 27 C C27 PSB . . . B 2 56.002 41.226 69.577 1 66.65 ? C27 PSB 1001 A 1 HETATM 28 S S28 PSB . . . B 2 55.775 40.729 67.954 1 71.69 ? S28 PSB 1001 A 1 HETATM 29 C C29 PSB . . . B 2 57.287 40.362 67.242 1 68.67 ? C29 PSB 1001 A 1 HETATM 30 C C30 PSB . . . B 2 58.291 39.66 67.989 1 69.2 ? C30 PSB 1001 A 1 HETATM 31 C C31 PSB . . . B 2 59.506 39.357 67.404 1 69.44 ? C31 PSB 1001 A 1 HETATM 32 C C32 PSB . . . B 2 59.754 39.741 66.047 1 70.35 ? C32 PSB 1001 A 1 HETATM 33 C C33 PSB . . . B 2 58.745 40.449 65.303 1 70.31 ? C33 PSB 1001 A 1 HETATM 34 C C34 PSB . . . B 2 57.518 40.751 65.914 1 69.86 ? C34 PSB 1001 A 1 HETATM 35 C C35 PSB . . . B 2 56.409 41.508 65.14 1 67.79 ? C35 PSB 1001 A 1 HETATM 36 O O36 PSB . . . B 2 56.514 42.898 65.322 1 67.37 ? O36 PSB 1001 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 353 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 36 #