data_1RSM # _model_server_result.job_id NJfyDT4tnjJEOPT3U-EPCg _model_server_result.datetime_utc '2024-11-09 02:16:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rsm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":125}' # _entry.id 1RSM # _exptl.entry_id 1RSM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 168.107 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DINITROPHENYLENE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RSM _cell.length_a 37.05 _cell.length_b 41.26 _cell.length_c 75.64 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RSM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 84 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf2 A SG CYS 40 A CYS 40 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? disulf ? disulf3 A SG CYS 58 A CYS 58 1_555 A SG CYS 110 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? disulf ? disulf4 A SG CYS 65 A CYS 65 1_555 A SG CYS 72 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? covale ? covale1 A NZ LYS 7 A LYS 7 1_555 B C1 NIN . A NIN 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale2 A NZ LYS 41 A LYS 41 1_555 B C5 NIN . A NIN 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.473 ? # _chem_comp.formula 'C6 H4 N2 O4' _chem_comp.formula_weight 168.107 _chem_comp.id NIN _chem_comp.mon_nstd_flag . _chem_comp.name DINITROPHENYLENE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O42 N4 NIN doub 237 n n C5 C6 NIN doub 238 n y C5 C4 NIN sing 239 n y C6 C1 NIN sing 240 n y N4 C4 NIN sing 241 n n N4 O41 NIN sing 242 n n C4 C3 NIN doub 243 n y C1 C2 NIN doub 244 n y C3 C2 NIN sing 245 n y C2 N2 NIN sing 246 n n N2 O21 NIN sing 247 n n N2 O22 NIN doub 248 n n C1 H1 NIN sing 249 n n C3 H2 NIN sing 250 n n C5 H3 NIN sing 251 n n C6 H4 NIN sing 252 n n # _atom_sites.entry_id 1RSM _atom_sites.fract_transf_matrix[1][1] 0.026991 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024237 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013221 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NIN A 1 125 1 NIN DNP . C 3 HOH A 1 126 2 HOH HOH . C 3 HOH A 2 127 3 HOH HOH . C 3 HOH A 3 128 4 HOH HOH . C 3 HOH A 4 129 5 HOH HOH . C 3 HOH A 5 130 6 HOH HOH . C 3 HOH A 6 131 7 HOH HOH . C 3 HOH A 7 132 8 HOH HOH . C 3 HOH A 8 133 9 HOH HOH . C 3 HOH A 9 134 10 HOH HOH . C 3 HOH A 10 135 11 HOH HOH . C 3 HOH A 11 136 12 HOH HOH . C 3 HOH A 12 137 13 HOH HOH . C 3 HOH A 13 138 14 HOH HOH . C 3 HOH A 14 139 15 HOH HOH . C 3 HOH A 15 140 16 HOH HOH . C 3 HOH A 16 141 17 HOH HOH . C 3 HOH A 17 142 18 HOH HOH . C 3 HOH A 18 143 19 HOH HOH . C 3 HOH A 19 144 20 HOH HOH . C 3 HOH A 20 145 21 HOH HOH . C 3 HOH A 21 146 22 HOH HOH . C 3 HOH A 22 147 23 HOH HOH . C 3 HOH A 23 148 24 HOH HOH . C 3 HOH A 24 149 25 HOH HOH . C 3 HOH A 25 150 26 HOH HOH . C 3 HOH A 26 151 27 HOH HOH . C 3 HOH A 27 152 28 HOH HOH . C 3 HOH A 28 153 29 HOH HOH . C 3 HOH A 29 154 30 HOH HOH . C 3 HOH A 30 155 31 HOH HOH . C 3 HOH A 31 156 32 HOH HOH . C 3 HOH A 32 157 33 HOH HOH . C 3 HOH A 33 158 34 HOH HOH . C 3 HOH A 34 159 35 HOH HOH . C 3 HOH A 35 160 36 HOH HOH . C 3 HOH A 36 161 37 HOH HOH . C 3 HOH A 37 162 38 HOH HOH . C 3 HOH A 38 163 39 HOH HOH . C 3 HOH A 39 164 40 HOH HOH . C 3 HOH A 40 165 41 HOH HOH . C 3 HOH A 41 166 42 HOH HOH . C 3 HOH A 42 167 43 HOH HOH . C 3 HOH A 43 168 44 HOH HOH . C 3 HOH A 44 169 45 HOH HOH . C 3 HOH A 45 170 46 HOH HOH . C 3 HOH A 46 171 47 HOH HOH . C 3 HOH A 47 172 48 HOH HOH . C 3 HOH A 48 173 49 HOH HOH . C 3 HOH A 49 174 50 HOH HOH . C 3 HOH A 50 175 51 HOH HOH . C 3 HOH A 51 176 52 HOH HOH . C 3 HOH A 52 177 53 HOH HOH . C 3 HOH A 53 178 54 HOH HOH . C 3 HOH A 54 179 55 HOH HOH . C 3 HOH A 55 180 56 HOH HOH . C 3 HOH A 56 181 57 HOH HOH . C 3 HOH A 57 182 58 HOH HOH . C 3 HOH A 58 183 59 HOH HOH . C 3 HOH A 59 184 60 HOH HOH . C 3 HOH A 60 185 61 HOH HOH . C 3 HOH A 61 186 62 HOH HOH . C 3 HOH A 62 187 63 HOH HOH . C 3 HOH A 63 188 64 HOH HOH . C 3 HOH A 64 189 65 HOH HOH . C 3 HOH A 65 190 66 HOH HOH . C 3 HOH A 66 191 67 HOH HOH . C 3 HOH A 67 192 68 HOH HOH . C 3 HOH A 68 193 69 HOH HOH . C 3 HOH A 69 194 70 HOH HOH . C 3 HOH A 70 195 71 HOH HOH . C 3 HOH A 71 196 72 HOH HOH . C 3 HOH A 72 197 73 HOH HOH . C 3 HOH A 73 198 74 HOH HOH . C 3 HOH A 74 199 75 HOH HOH . C 3 HOH A 75 200 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NIN . . . B 2 12.433 2.281 19.671 1 20 ? C1 NIN 125 A 1 HETATM 2 C C2 NIN . . . B 2 13.439 1.717 20.466 1 22.9 ? C2 NIN 125 A 1 HETATM 3 N N2 NIN . . . B 2 13.122 0.767 21.449 1 24.37 ? N2 NIN 125 A 1 HETATM 4 O O21 NIN . . . B 2 11.897 0.412 21.649 1 24.67 ? O21 NIN 125 A 1 HETATM 5 O O22 NIN . . . B 2 14.076 0.239 22.169 1 26.34 ? O22 NIN 125 A 1 HETATM 6 C C3 NIN . . . B 2 14.8 2.057 20.269 1 22.24 ? C3 NIN 125 A 1 HETATM 7 C C4 NIN . . . B 2 15.119 2.982 19.241 1 22.23 ? C4 NIN 125 A 1 HETATM 8 N N4 NIN . . . B 2 16.476 3.313 19.09 1 23.61 ? N4 NIN 125 A 1 HETATM 9 O O41 NIN . . . B 2 17.358 2.756 19.892 1 24.83 ? O41 NIN 125 A 1 HETATM 10 O O42 NIN . . . B 2 16.866 4.088 18.136 1 23.85 ? O42 NIN 125 A 1 HETATM 11 C C5 NIN . . . B 2 14.138 3.535 18.435 1 20.61 ? C5 NIN 125 A 1 HETATM 12 C C6 NIN . . . B 2 12.795 3.18 18.643 1 20.31 ? C6 NIN 125 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #