data_1RT2
#
_model_server_result.job_id            5tDpXUBAPaZNSOn6xXmKMQ 
_model_server_result.datetime_utc      '2024-11-25 04:58:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1rt2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":999}' 
#
_entry.id    1RT2 
#
_exptl.entry_id    1RT2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              364.438 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '6-BENZYL-1-BENZYLOXYMETHYL-5-ISOPROPYL URACIL' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1RT2 
_cell.length_a            137.3 
_cell.length_b            110.2 
_cell.length_c            72.1 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1RT2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LEU 279 A LEU 279 1_555 A N CSD 280 A CSD 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale2 A C CSD 280 A CSD 280 1_555 A N LYS 281 A LYS 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
#
_chem_comp.formula           'C22 H24 N2 O3' 
_chem_comp.formula_weight    364.438 
_chem_comp.id                TNK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '6-BENZYL-1-BENZYLOXYMETHYL-5-ISOPROPYL URACIL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 TNK doub 321 n y 
C1 C6 TNK sing 322 n y 
C1 C13 TNK sing 323 n n 
C2 C3 TNK sing 324 n y 
C2 H2 TNK sing 325 n n 
C3 C4 TNK doub 326 n y 
C3 H3 TNK sing 327 n n 
C4 C5 TNK sing 328 n y 
C4 H4 TNK sing 329 n n 
C5 C6 TNK doub 330 n y 
C5 H5 TNK sing 331 n n 
C6 H6 TNK sing 332 n n 
C7 N8 TNK sing 333 n n 
C7 C12 TNK doub 334 n n 
C7 C13 TNK sing 335 n n 
N8 C9 TNK sing 336 n n 
N8 C17 TNK sing 337 n n 
C9 O9 TNK doub 338 n n 
C9 N10 TNK sing 339 n n 
N10 C11 TNK sing 340 n n 
N10 HN1 TNK sing 341 n n 
C11 O11 TNK doub 342 n n 
C11 C12 TNK sing 343 n n 
C12 C14 TNK sing 344 n n 
C13 H131 TNK sing 345 n n 
C13 H132 TNK sing 346 n n 
C14 C15 TNK sing 347 n n 
C14 C16 TNK sing 348 n n 
C14 H14 TNK sing 349 n n 
C15 H151 TNK sing 350 n n 
C15 H152 TNK sing 351 n n 
C15 H153 TNK sing 352 n n 
C16 H161 TNK sing 353 n n 
C16 H162 TNK sing 354 n n 
C16 H163 TNK sing 355 n n 
C17 O17 TNK sing 356 n n 
C17 H171 TNK sing 357 n n 
C17 H172 TNK sing 358 n n 
O17 C18 TNK sing 359 n n 
C18 C19 TNK sing 360 n n 
C18 H181 TNK sing 361 n n 
C18 H182 TNK sing 362 n n 
C19 C20 TNK doub 363 n y 
C19 C24 TNK sing 364 n y 
C20 C21 TNK sing 365 n y 
C20 H20 TNK sing 366 n n 
C21 C22 TNK doub 367 n y 
C21 H21 TNK sing 368 n n 
C22 C23 TNK sing 369 n y 
C22 H22 TNK sing 370 n n 
C23 C24 TNK doub 371 n y 
C23 H23 TNK sing 372 n n 
C24 H24 TNK sing 373 n n 
#
_atom_sites.entry_id                     1RT2 
_atom_sites.fract_transf_matrix[1][1]    0.007283 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009074 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01387 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 TNK A 1 999 999 TNK TNK . 
D 4 HOH A 1 1000 1000 HOH HOH . 
D 4 HOH A 2 1001 1001 HOH HOH . 
D 4 HOH A 3 1002 1002 HOH HOH . 
D 4 HOH A 4 1003 1003 HOH HOH . 
D 4 HOH A 5 1004 1004 HOH HOH . 
D 4 HOH A 6 1005 1005 HOH HOH . 
D 4 HOH A 7 1006 1006 HOH HOH . 
D 4 HOH A 8 1007 1007 HOH HOH . 
D 4 HOH A 9 1008 1008 HOH HOH . 
D 4 HOH A 10 1009 1009 HOH HOH . 
D 4 HOH A 11 1010 1010 HOH HOH . 
D 4 HOH A 12 1011 1011 HOH HOH . 
D 4 HOH A 13 1012 1012 HOH HOH . 
D 4 HOH A 14 1013 1013 HOH HOH . 
D 4 HOH A 15 1014 1014 HOH HOH . 
D 4 HOH A 16 1015 1015 HOH HOH . 
D 4 HOH A 17 1016 1016 HOH HOH . 
D 4 HOH A 18 1017 1017 HOH HOH . 
D 4 HOH A 19 1018 1018 HOH HOH . 
D 4 HOH A 20 1019 1019 HOH HOH . 
D 4 HOH A 21 1020 1020 HOH HOH . 
D 4 HOH A 22 1021 1021 HOH HOH . 
D 4 HOH A 23 1022 1022 HOH HOH . 
D 4 HOH A 24 1023 1023 HOH HOH . 
D 4 HOH A 25 1024 1024 HOH HOH . 
D 4 HOH A 26 1025 1025 HOH HOH . 
D 4 HOH A 27 1026 1026 HOH HOH . 
D 4 HOH A 28 1027 1027 HOH HOH . 
D 4 HOH A 29 1028 1028 HOH HOH . 
D 4 HOH A 30 1029 1029 HOH HOH . 
D 4 HOH A 31 1030 1030 HOH HOH . 
D 4 HOH A 32 1031 1031 HOH HOH . 
D 4 HOH A 33 1032 1032 HOH HOH . 
D 4 HOH A 34 1033 1033 HOH HOH . 
D 4 HOH A 35 1034 1034 HOH HOH . 
D 4 HOH A 36 1035 1035 HOH HOH . 
D 4 HOH A 37 1036 1036 HOH HOH . 
D 4 HOH A 38 1037 1037 HOH HOH . 
D 4 HOH A 39 1038 1038 HOH HOH . 
D 4 HOH A 40 1039 1039 HOH HOH . 
D 4 HOH A 41 1040 1040 HOH HOH . 
D 4 HOH A 42 1041 1041 HOH HOH . 
D 4 HOH A 43 1042 1042 HOH HOH . 
D 4 HOH A 44 1043 1043 HOH HOH . 
D 4 HOH A 45 1044 1044 HOH HOH . 
D 4 HOH A 46 1045 1045 HOH HOH . 
D 4 HOH A 47 1046 1046 HOH HOH . 
D 4 HOH A 48 1047 1047 HOH HOH . 
D 4 HOH A 49 1048 1048 HOH HOH . 
D 4 HOH A 50 1049 1049 HOH HOH . 
D 4 HOH A 51 1050 1050 HOH HOH . 
D 4 HOH A 52 1051 1051 HOH HOH . 
D 4 HOH A 53 1052 1052 HOH HOH . 
D 4 HOH A 54 1053 1053 HOH HOH . 
D 4 HOH A 55 1054 1054 HOH HOH . 
D 4 HOH A 56 1055 1055 HOH HOH . 
D 4 HOH A 57 1056 1056 HOH HOH . 
D 4 HOH A 58 1057 1057 HOH HOH . 
D 4 HOH A 59 1058 1058 HOH HOH . 
D 4 HOH A 60 1059 1059 HOH HOH . 
D 4 HOH A 61 1060 1060 HOH HOH . 
D 4 HOH A 62 1061 1061 HOH HOH . 
D 4 HOH A 63 1062 1062 HOH HOH . 
D 4 HOH A 64 1063 1063 HOH HOH . 
D 4 HOH A 65 1064 1064 HOH HOH . 
D 4 HOH A 66 1065 1065 HOH HOH . 
D 4 HOH A 67 1066 1066 HOH HOH . 
D 4 HOH A 68 1067 1067 HOH HOH . 
D 4 HOH A 69 1068 1068 HOH HOH . 
D 4 HOH A 70 1069 1069 HOH HOH . 
D 4 HOH A 71 1070 1070 HOH HOH . 
D 4 HOH A 72 1071 1071 HOH HOH . 
D 4 HOH A 73 1072 1072 HOH HOH . 
D 4 HOH A 74 1073 1073 HOH HOH . 
D 4 HOH A 75 1074 1074 HOH HOH . 
D 4 HOH A 76 1075 1075 HOH HOH . 
D 4 HOH A 77 1076 1076 HOH HOH . 
D 4 HOH A 78 1077 1077 HOH HOH . 
D 4 HOH A 79 1078 1078 HOH HOH . 
D 4 HOH A 80 1079 1079 HOH HOH . 
D 4 HOH A 81 1080 1080 HOH HOH . 
D 4 HOH A 82 1081 1081 HOH HOH . 
D 4 HOH A 83 1082 1082 HOH HOH . 
D 4 HOH A 84 1083 1083 HOH HOH . 
D 4 HOH A 85 1084 1084 HOH HOH . 
D 4 HOH A 86 1085 1085 HOH HOH . 
D 4 HOH A 87 1097 1097 HOH HOH . 
D 4 HOH A 88 1137 1137 HOH HOH . 
E 4 HOH B 1 1086 1086 HOH HOH . 
E 4 HOH B 2 1087 1087 HOH HOH . 
E 4 HOH B 3 1088 1088 HOH HOH . 
E 4 HOH B 4 1089 1089 HOH HOH . 
E 4 HOH B 5 1090 1090 HOH HOH . 
E 4 HOH B 6 1091 1091 HOH HOH . 
E 4 HOH B 7 1092 1092 HOH HOH . 
E 4 HOH B 8 1093 1093 HOH HOH . 
E 4 HOH B 9 1094 1094 HOH HOH . 
E 4 HOH B 10 1095 1095 HOH HOH . 
E 4 HOH B 11 1096 1096 HOH HOH . 
E 4 HOH B 12 1098 1098 HOH HOH . 
E 4 HOH B 13 1099 1099 HOH HOH . 
E 4 HOH B 14 1100 1100 HOH HOH . 
E 4 HOH B 15 1101 1101 HOH HOH . 
E 4 HOH B 16 1102 1102 HOH HOH . 
E 4 HOH B 17 1103 1103 HOH HOH . 
E 4 HOH B 18 1104 1104 HOH HOH . 
E 4 HOH B 19 1105 1105 HOH HOH . 
E 4 HOH B 20 1106 1106 HOH HOH . 
E 4 HOH B 21 1107 1107 HOH HOH . 
E 4 HOH B 22 1108 1108 HOH HOH . 
E 4 HOH B 23 1109 1109 HOH HOH . 
E 4 HOH B 24 1110 1110 HOH HOH . 
E 4 HOH B 25 1111 1111 HOH HOH . 
E 4 HOH B 26 1112 1112 HOH HOH . 
E 4 HOH B 27 1113 1113 HOH HOH . 
E 4 HOH B 28 1114 1114 HOH HOH . 
E 4 HOH B 29 1115 1115 HOH HOH . 
E 4 HOH B 30 1116 1116 HOH HOH . 
E 4 HOH B 31 1117 1117 HOH HOH . 
E 4 HOH B 32 1118 1118 HOH HOH . 
E 4 HOH B 33 1119 1119 HOH HOH . 
E 4 HOH B 34 1120 1120 HOH HOH . 
E 4 HOH B 35 1121 1121 HOH HOH . 
E 4 HOH B 36 1122 1122 HOH HOH . 
E 4 HOH B 37 1123 1123 HOH HOH . 
E 4 HOH B 38 1124 1124 HOH HOH . 
E 4 HOH B 39 1125 1125 HOH HOH . 
E 4 HOH B 40 1126 1126 HOH HOH . 
E 4 HOH B 41 1127 1127 HOH HOH . 
E 4 HOH B 42 1128 1128 HOH HOH . 
E 4 HOH B 43 1129 1129 HOH HOH . 
E 4 HOH B 44 1130 1130 HOH HOH . 
E 4 HOH B 45 1131 1131 HOH HOH . 
E 4 HOH B 46 1132 1132 HOH HOH . 
E 4 HOH B 47 1133 1133 HOH HOH . 
E 4 HOH B 48 1134 1134 HOH HOH . 
E 4 HOH B 49 1135 1135 HOH HOH . 
E 4 HOH B 50 1136 1136 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 TNK . . . C 3 -1.21 -34.512 26.598 1 26.38 ? C1 TNK 999 A 1 
HETATM 2 C C2 TNK . . . C 3 -1.706 -33.843 27.7 1 23.05 ? C2 TNK 999 A 1 
HETATM 3 C C3 TNK . . . C 3 -0.901 -32.971 28.424 1 26.62 ? C3 TNK 999 A 1 
HETATM 4 C C4 TNK . . . C 3 0.41 -32.759 28.051 1 24.02 ? C4 TNK 999 A 1 
HETATM 5 C C5 TNK . . . C 3 0.921 -33.417 26.948 1 33.79 ? C5 TNK 999 A 1 
HETATM 6 C C6 TNK . . . C 3 0.11 -34.291 26.223 1 41.31 ? C6 TNK 999 A 1 
HETATM 7 C C7 TNK . . . C 3 -1.806 -35.593 24.39 1 29.97 ? C7 TNK 999 A 1 
HETATM 8 N N8 TNK . . . C 3 -2.573 -34.877 23.531 1 25.29 ? N8 TNK 999 A 1 
HETATM 9 C C9 TNK . . . C 3 -2.47 -35.029 22.13 1 19.94 ? C9 TNK 999 A 1 
HETATM 10 O O9 TNK . . . C 3 -3.143 -34.409 21.323 1 25.14 ? O9 TNK 999 A 1 
HETATM 11 N N10 TNK . . . C 3 -1.547 -35.927 21.682 1 15.49 ? N10 TNK 999 A 1 
HETATM 12 C C11 TNK . . . C 3 -0.718 -36.681 22.467 1 28.56 ? C11 TNK 999 A 1 
HETATM 13 O O11 TNK . . . C 3 0.085 -37.431 21.923 1 30.51 ? O11 TNK 999 A 1 
HETATM 14 C C12 TNK . . . C 3 -0.896 -36.466 23.918 1 34.58 ? C12 TNK 999 A 1 
HETATM 15 C C13 TNK . . . C 3 -2.067 -35.485 25.871 1 28.32 ? C13 TNK 999 A 1 
HETATM 16 C C14 TNK . . . C 3 -0.019 -37.266 24.848 1 23.39 ? C14 TNK 999 A 1 
HETATM 17 C C15 TNK . . . C 3 -0.578 -38.637 25.127 1 22.19 ? C15 TNK 999 A 1 
HETATM 18 C C16 TNK . . . C 3 1.456 -37.292 24.428 1 16.41 ? C16 TNK 999 A 1 
HETATM 19 C C17 TNK . . . C 3 -3.517 -33.915 24.082 1 19.72 ? C17 TNK 999 A 1 
HETATM 20 O O17 TNK . . . C 3 -4.776 -34.107 23.502 1 34.77 ? O17 TNK 999 A 1 
HETATM 21 C C18 TNK . . . C 3 -5.909 -33.888 24.33 1 42.27 ? C18 TNK 999 A 1 
HETATM 22 C C19 TNK . . . C 3 -6.989 -34.893 24.183 1 39.83 ? C19 TNK 999 A 1 
HETATM 23 C C20 TNK . . . C 3 -6.896 -35.868 23.19 1 32.67 ? C20 TNK 999 A 1 
HETATM 24 C C21 TNK . . . C 3 -7.842 -36.852 23.077 1 25.55 ? C21 TNK 999 A 1 
HETATM 25 C C22 TNK . . . C 3 -8.907 -36.882 23.958 1 48.71 ? C22 TNK 999 A 1 
HETATM 26 C C23 TNK . . . C 3 -9.02 -35.914 24.951 1 58.05 ? C23 TNK 999 A 1 
HETATM 27 C C24 TNK . . . C 3 -8.058 -34.918 25.059 1 52.5 ? C24 TNK 999 A 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#