data_1RT3 # _model_server_result.job_id KhrmkbMkUncrt4R6U5ZLBQ _model_server_result.datetime_utc '2024-11-28 21:03:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rt3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":999}' # _entry.id 1RT3 # _exptl.entry_id 1RT3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 298.297 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6,11-DIHYDRO-11-ETHYL-6-METHYL-9-NITRO-5H-PYRIDO[2,3-B][1,5]BENZODIAZEPIN-5-ONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RT3 _cell.length_a 138.9 _cell.length_b 114.4 _cell.length_c 65.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RT3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 279 A LEU 279 1_555 A N CSD 280 A CSD 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C CSD 280 A CSD 280 1_555 A N LYS 281 A LYS 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C15 H14 N4 O3' _chem_comp.formula_weight 298.297 _chem_comp.id U05 _chem_comp.mon_nstd_flag . _chem_comp.name 6,11-DIHYDRO-11-ETHYL-6-METHYL-9-NITRO-5H-PYRIDO[2,3-B][1,5]BENZODIAZEPIN-5-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1051U91 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 U05 doub 371 n y N1 C1A U05 sing 372 n y C2 C3 U05 sing 373 n y C2 H2 U05 sing 374 n n C3 C4 U05 doub 375 n y C3 H3 U05 sing 376 n n C4 C4A U05 sing 377 n y C4 H4 U05 sing 378 n n C4A C5 U05 sing 379 n n C4A C1A U05 doub 380 n y C5 O13 U05 doub 381 n n C5 N6 U05 sing 382 n n N6 C12 U05 sing 383 n n N6 C6A U05 sing 384 n n C12 H121 U05 sing 385 n n C12 H122 U05 sing 386 n n C12 H123 U05 sing 387 n n C6A C7 U05 doub 388 n y C6A C11 U05 sing 389 n y C7 C8 U05 sing 390 n y C7 H7 U05 sing 391 n n C8 C9 U05 doub 392 n y C8 H8 U05 sing 393 n n C9 N U05 sing 394 n n C9 C10 U05 sing 395 n y N O1 U05 sing 396 n n N O2 U05 doub 397 n n C10 C11 U05 doub 398 n y C10 H10 U05 sing 399 n n C11 N11 U05 sing 400 n n N11 C14 U05 sing 401 n n N11 C1A U05 sing 402 n n C14 C15 U05 sing 403 n n C14 H141 U05 sing 404 n n C14 H142 U05 sing 405 n n C15 H151 U05 sing 406 n n C15 H152 U05 sing 407 n n C15 H153 U05 sing 408 n n # _atom_sites.entry_id 1RT3 _atom_sites.fract_transf_matrix[1][1] 0.007199 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008741 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015244 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id U05 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 999 _pdbx_nonpoly_scheme.auth_seq_num 999 _pdbx_nonpoly_scheme.pdb_mon_id U05 _pdbx_nonpoly_scheme.auth_mon_id U05 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 U05 . . . C 3 0.371 -36.325 19.803 1 28.61 ? N1 U05 999 A 1 HETATM 2 C C2 U05 . . . C 3 -0.507 -35.74 18.962 1 12.88 ? C2 U05 999 A 1 HETATM 3 C C3 U05 . . . C 3 -1.499 -34.892 19.407 1 17.01 ? C3 U05 999 A 1 HETATM 4 C C4 U05 . . . C 3 -1.602 -34.629 20.756 1 13.72 ? C4 U05 999 A 1 HETATM 5 C C4A U05 . . . C 3 -0.712 -35.222 21.634 1 14.34 ? C4A U05 999 A 1 HETATM 6 C C5 U05 . . . C 3 -0.918 -35.039 23.131 1 34.13 ? C5 U05 999 A 1 HETATM 7 O O13 U05 . . . C 3 -2.077 -34.997 23.551 1 45.94 ? O13 U05 999 A 1 HETATM 8 N N6 U05 . . . C 3 0.115 -34.919 23.973 1 42.31 ? N6 U05 999 A 1 HETATM 9 C C12 U05 . . . C 3 -0.144 -34.707 25.417 1 32.02 ? C12 U05 999 A 1 HETATM 10 C C6A U05 . . . C 3 1.513 -34.94 23.639 1 52.87 ? C6A U05 999 A 1 HETATM 11 C C7 U05 . . . C 3 2.384 -34.111 24.341 1 54.83 ? C7 U05 999 A 1 HETATM 12 C C8 U05 . . . C 3 3.742 -34.141 24.083 1 66.53 ? C8 U05 999 A 1 HETATM 13 C C9 U05 . . . C 3 4.246 -34.999 23.118 1 74.1 ? C9 U05 999 A 1 HETATM 14 N N U05 . . . C 3 5.683 -35.029 22.844 1 85.74 ? N U05 999 A 1 HETATM 15 O O1 U05 . . . C 3 6.074 -35.772 21.976 1 94.16 ? O1 U05 999 A 1 HETATM 16 O O2 U05 . . . C 3 6.379 -34.316 23.521 1 93.87 ? O2 U05 999 A 1 HETATM 17 C C10 U05 . . . C 3 3.385 -35.832 22.418 1 61.76 ? C10 U05 999 A 1 HETATM 18 C C11 U05 . . . C 3 2.022 -35.81 22.674 1 45.65 ? C11 U05 999 A 1 HETATM 19 N N11 U05 . . . C 3 1.15 -36.691 22.008 1 25.08 ? N11 U05 999 A 1 HETATM 20 C C14 U05 . . . C 3 1.782 -37.943 21.479 1 27.16 ? C14 U05 999 A 1 HETATM 21 C C15 U05 . . . C 3 1.283 -39.203 22.114 1 25.24 ? C15 U05 999 A 1 HETATM 22 C C1A U05 . . . C 3 0.271 -36.069 21.119 1 19.09 ? C1A U05 999 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #