data_1RT9
#
_model_server_result.job_id            neTWWIjw8zmpzjqTEiTF1Q 
_model_server_result.datetime_utc      '2024-11-28 10:54:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1rt9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":300}' 
#
_entry.id    1RT9 
#
_exptl.entry_id    1RT9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              266.253 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1RT9 
_cell.length_a            142.076 
_cell.length_b            142.076 
_cell.length_c            166.955 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1RT9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C11 H14 N4 O4' 
_chem_comp.formula_weight    266.253 
_chem_comp.id                IMH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Forodesine;Immucillin H' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5' C5' IMH sing 173 n n 
O5' "HO'5" IMH sing 174 n n 
C5' C4' IMH sing 175 n n 
C5' "H5'1" IMH sing 176 n n 
C5' "H5'2" IMH sing 177 n n 
C4' N4' IMH sing 178 n n 
C4' C3' IMH sing 179 n n 
C4' H4' IMH sing 180 n n 
N4' C1' IMH sing 181 n n 
N4' "HN'4" IMH sing 182 n n 
C3' O3' IMH sing 183 n n 
C3' C2' IMH sing 184 n n 
C3' H3' IMH sing 185 n n 
O3' "HO'3" IMH sing 186 n n 
C2' O2' IMH sing 187 n n 
C2' C1' IMH sing 188 n n 
C2' H2' IMH sing 189 n n 
O2' "HO'2" IMH sing 190 n n 
C1' C9 IMH sing 191 n n 
C1' H1' IMH sing 192 n n 
C9 C8 IMH doub 193 n y 
C9 C4 IMH sing 194 n y 
C8 N7 IMH sing 195 n y 
C8 H8 IMH sing 196 n n 
N7 C5 IMH sing 197 n y 
N7 HN7 IMH sing 198 n n 
C5 C6 IMH sing 199 n n 
C5 C4 IMH doub 200 n y 
C6 O6 IMH doub 201 n n 
C6 N1 IMH sing 202 n n 
N1 C2 IMH sing 203 n n 
C2 N3 IMH doub 204 n n 
C2 H2 IMH sing 205 n n 
N3 C4 IMH sing 206 n n 
N1 H1 IMH sing 207 n n 
#
_atom_sites.entry_id                     1RT9 
_atom_sites.fract_transf_matrix[1][1]    0.007038 
_atom_sites.fract_transf_matrix[1][2]    0.004064 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008127 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00599 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 401 401 SO4 SO4 . 
C 2 SO4 A 1 402 402 SO4 SO4 . 
D 2 SO4 A 1 403 403 SO4 SO4 . 
E 3 IMH A 1 300 300 IMH IMH . 
F 4 HOH A 1 501 501 HOH HOH . 
F 4 HOH A 2 502 502 HOH HOH . 
F 4 HOH A 3 503 503 HOH HOH . 
F 4 HOH A 4 504 504 HOH HOH . 
F 4 HOH A 5 505 505 HOH HOH . 
F 4 HOH A 6 506 506 HOH HOH . 
F 4 HOH A 7 507 507 HOH HOH . 
F 4 HOH A 8 508 508 HOH HOH . 
F 4 HOH A 9 509 509 HOH HOH . 
F 4 HOH A 10 510 510 HOH HOH . 
F 4 HOH A 11 511 511 HOH HOH . 
F 4 HOH A 12 512 512 HOH HOH . 
F 4 HOH A 13 513 513 HOH HOH . 
F 4 HOH A 14 514 514 HOH HOH . 
F 4 HOH A 15 515 515 HOH HOH . 
F 4 HOH A 16 516 516 HOH HOH . 
F 4 HOH A 17 517 517 HOH HOH . 
F 4 HOH A 18 518 518 HOH HOH . 
F 4 HOH A 19 519 519 HOH HOH . 
F 4 HOH A 20 520 520 HOH HOH . 
F 4 HOH A 21 521 521 HOH HOH . 
F 4 HOH A 22 522 522 HOH HOH . 
F 4 HOH A 23 523 523 HOH HOH . 
F 4 HOH A 24 524 524 HOH HOH . 
F 4 HOH A 25 525 525 HOH HOH . 
F 4 HOH A 26 526 526 HOH HOH . 
F 4 HOH A 27 527 527 HOH HOH . 
F 4 HOH A 28 528 528 HOH HOH . 
F 4 HOH A 29 529 529 HOH HOH . 
F 4 HOH A 30 530 530 HOH HOH . 
F 4 HOH A 31 531 531 HOH HOH . 
F 4 HOH A 32 532 532 HOH HOH . 
F 4 HOH A 33 533 533 HOH HOH . 
F 4 HOH A 34 534 534 HOH HOH . 
F 4 HOH A 35 535 535 HOH HOH . 
F 4 HOH A 36 536 536 HOH HOH . 
F 4 HOH A 37 537 537 HOH HOH . 
F 4 HOH A 38 538 538 HOH HOH . 
F 4 HOH A 39 539 539 HOH HOH . 
F 4 HOH A 40 540 540 HOH HOH . 
F 4 HOH A 41 541 541 HOH HOH . 
F 4 HOH A 42 542 542 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5' IMH . . . E 3 1.969 21.596 23.514 1 72.21 ? O5' IMH 300 A 1 
HETATM 2 C C5' IMH . . . E 3 1.833 20.221 23.19 1 69.78 ? C5' IMH 300 A 1 
HETATM 3 C C4' IMH . . . E 3 3.168 19.587 23.269 1 69.46 ? C4' IMH 300 A 1 
HETATM 4 N N4' IMH . . . E 3 3.774 19.716 24.568 1 68.74 ? N4' IMH 300 A 1 
HETATM 5 C C3' IMH . . . E 3 3.067 18.131 22.934 1 68.24 ? C3' IMH 300 A 1 
HETATM 6 O O3' IMH . . . E 3 3.837 17.975 21.732 1 68 ? O3' IMH 300 A 1 
HETATM 7 C C2' IMH . . . E 3 3.68 17.424 24.105 1 69.02 ? C2' IMH 300 A 1 
HETATM 8 O O2' IMH . . . E 3 4.819 16.665 23.669 1 68.92 ? O2' IMH 300 A 1 
HETATM 9 C C1' IMH . . . E 3 4.104 18.462 25.184 1 67.31 ? C1' IMH 300 A 1 
HETATM 10 C C9 IMH . . . E 3 3.274 18.396 26.482 1 63.99 ? C9 IMH 300 A 1 
HETATM 11 C C8 IMH . . . E 3 3.184 19.433 27.411 1 61.46 ? C8 IMH 300 A 1 
HETATM 12 N N7 IMH . . . E 3 2.417 19.189 28.437 1 60.54 ? N7 IMH 300 A 1 
HETATM 13 C C5 IMH . . . E 3 1.935 17.901 28.231 1 61.08 ? C5 IMH 300 A 1 
HETATM 14 C C6 IMH . . . E 3 1.037 17.122 29.036 1 60.45 ? C6 IMH 300 A 1 
HETATM 15 O O6 IMH . . . E 3 0.519 17.46 30.093 1 61.51 ? O6 IMH 300 A 1 
HETATM 16 N N1 IMH . . . E 3 0.77 15.847 28.507 1 58.44 ? N1 IMH 300 A 1 
HETATM 17 C C2 IMH . . . E 3 1.306 15.363 27.309 1 58.07 ? C2 IMH 300 A 1 
HETATM 18 N N3 IMH . . . E 3 2.155 16.101 26.533 1 60.99 ? N3 IMH 300 A 1 
HETATM 19 C C4 IMH . . . E 3 2.436 17.372 27.038 1 62.12 ? C4 IMH 300 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           355 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           19 
#