data_1RTI # _model_server_result.job_id vPpHLM14BiJRl0NMWMnNsA _model_server_result.datetime_utc '2024-10-26 08:26:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rti # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":999}' # _entry.id 1RTI # _exptl.entry_id 1RTI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 308.353 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1-(2-HYDROXYETHYLOXYMETHYL)-6-PHENYL THIOTHYMINE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RTI _cell.length_a 140.8 _cell.length_b 111.2 _cell.length_c 73 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RTI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 279 A LEU 279 1_555 A N CSD 280 A CSD 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C CSD 280 A CSD 280 1_555 A N LYS 281 A LYS 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C14 H16 N2 O4 S' _chem_comp.formula_weight 308.353 _chem_comp.id HEF _chem_comp.mon_nstd_flag . _chem_comp.name '1-(2-HYDROXYETHYLOXYMETHYL)-6-PHENYL THIOTHYMINE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 HEF sing 144 n n N1 C6 HEF sing 145 n n N1 CM HEF sing 146 n n C2 O2 HEF doub 147 n n C2 N3 HEF sing 148 n n N3 C4 HEF sing 149 n n N3 HN3 HEF sing 150 n n C4 O4 HEF doub 151 n n C4 C5 HEF sing 152 n n C5 C6 HEF doub 153 n n C5 CM5 HEF sing 154 n n C6 S' HEF sing 155 n n CM5 HM51 HEF sing 156 n n CM5 HM52 HEF sing 157 n n CM5 HM53 HEF sing 158 n n CM OM HEF sing 159 n n CM HM1 HEF sing 160 n n CM HM2 HEF sing 161 n n OM CE1 HEF sing 162 n n CE1 CE2 HEF sing 163 n n CE1 HE11 HEF sing 164 n n CE1 HE12 HEF sing 165 n n CE2 OE HEF sing 166 n n CE2 HE21 HEF sing 167 n n CE2 HE22 HEF sing 168 n n OE HOE HEF sing 169 n n S' C1' HEF sing 170 n n C1' C2' HEF doub 171 n y C1' C6' HEF sing 172 n y C2' C3' HEF sing 173 n y C2' H2' HEF sing 174 n n C3' C4' HEF doub 175 n y C3' H3' HEF sing 176 n n C4' C5' HEF sing 177 n y C4' H4' HEF sing 178 n n C5' C6' HEF doub 179 n y C5' H5' HEF sing 180 n n C6' H6' HEF sing 181 n n # _atom_sites.entry_id 1RTI _atom_sites.fract_transf_matrix[1][1] 0.007102 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008993 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013699 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id HEF _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 999 _pdbx_nonpoly_scheme.auth_seq_num 999 _pdbx_nonpoly_scheme.pdb_mon_id HEF _pdbx_nonpoly_scheme.auth_mon_id HEF _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 HEF . . . C 3 -2.833 -34.654 23.823 1 42.12 ? N1 HEF 999 A 1 HETATM 2 C C2 HEF . . . C 3 -2.69 -34.894 22.457 1 41.97 ? C2 HEF 999 A 1 HETATM 3 O O2 HEF . . . C 3 -3.327 -34.273 21.605 1 33.46 ? O2 HEF 999 A 1 HETATM 4 N N3 HEF . . . C 3 -1.777 -35.88 22.112 1 42.95 ? N3 HEF 999 A 1 HETATM 5 C C4 HEF . . . C 3 -1.011 -36.631 22.996 1 43.86 ? C4 HEF 999 A 1 HETATM 6 O O4 HEF . . . C 3 -0.235 -37.484 22.569 1 45.47 ? O4 HEF 999 A 1 HETATM 7 C C5 HEF . . . C 3 -1.223 -36.31 24.401 1 40.69 ? C5 HEF 999 A 1 HETATM 8 C C6 HEF . . . C 3 -2.108 -35.35 24.76 1 43.84 ? C6 HEF 999 A 1 HETATM 9 C CM5 HEF . . . C 3 -0.464 -37.092 25.475 1 25.21 ? CM5 HEF 999 A 1 HETATM 10 C CM HEF . . . C 3 -3.817 -33.641 24.248 1 46.41 ? CM HEF 999 A 1 HETATM 11 O OM HEF . . . C 3 -5.157 -34.097 24.042 1 59.09 ? OM HEF 999 A 1 HETATM 12 C CE1 HEF . . . C 3 -6.01 -33.727 25.132 1 67.76 ? CE1 HEF 999 A 1 HETATM 13 C CE2 HEF . . . C 3 -7.482 -33.948 24.796 1 78.33 ? CE2 HEF 999 A 1 HETATM 14 O OE HEF . . . C 3 -7.69 -35.187 24.138 1 87.63 ? OE HEF 999 A 1 HETATM 15 S S' HEF . . . C 3 -2.354 -34.935 26.517 1 55.02 ? S' HEF 999 A 1 HETATM 16 C C1' HEF . . . C 3 -0.893 -33.968 27.015 1 61.19 ? C1' HEF 999 A 1 HETATM 17 C C2' HEF . . . C 3 -0.748 -33.568 28.338 1 55.32 ? C2' HEF 999 A 1 HETATM 18 C C3' HEF . . . C 3 0.386 -32.869 28.737 1 54.78 ? C3' HEF 999 A 1 HETATM 19 C C4' HEF . . . C 3 1.379 -32.566 27.811 1 56.86 ? C4' HEF 999 A 1 HETATM 20 C C5' HEF . . . C 3 1.236 -32.965 26.488 1 57.84 ? C5' HEF 999 A 1 HETATM 21 C C6' HEF . . . C 3 0.098 -33.665 26.09 1 65.39 ? C6' HEF 999 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 21 #