data_1RTL # _model_server_result.job_id XXex5BjWCsbnA8zrSy_gAg _model_server_result.datetime_utc '2025-09-07 20:18:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rtl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 1RTL # _exptl.entry_id 1RTL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 446.583 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(2R,3S)-1-((2S)-2-{[(CYCLOPENTYLAMINO)CARBONYL]AMINO}-3-METHYLBUTANOYL)-2-(1-FORMYL-1-CYCLOBUTYL)PYRROLIDINYL]CYCLOPROPANECARBOXAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1RTL _cell.length_a 224.082 _cell.length_b 224.082 _cell.length_c 75.694 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RTL _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 150 A SER 139 1_555 F C24 CPX . A CPX 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.401 ? metalc ? metalc1 A SG CYS 108 A CYS 97 1_555 E ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc2 A SG CYS 110 A CYS 99 1_555 E ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc3 A SG CYS 156 A CYS 145 1_555 E ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc4 E ZN ZN . A ZN 301 1_555 H O HOH . A HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc5 B SG CYS 108 B CYS 97 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc6 B SG CYS 110 B CYS 99 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc7 B SG CYS 156 B CYS 145 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc8 G ZN ZN . B ZN 301 1_555 I O HOH . B HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? # _chem_comp.formula 'C24 H38 N4 O4' _chem_comp.formula_weight 446.583 _chem_comp.id CPX _chem_comp.mon_nstd_flag . _chem_comp.name N-[(2R,3S)-1-((2S)-2-{[(CYCLOPENTYLAMINO)CARBONYL]AMINO}-3-METHYLBUTANOYL)-2-(1-FORMYL-1-CYCLOBUTYL)PYRROLIDINYL]CYCLOPROPANECARBOXAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O27 C26 CPX doub 70 n n C17 C16 CPX sing 71 n n C17 C12 CPX sing 72 n n C17 H171 CPX sing 73 n n C17 H172 CPX sing 74 n n C16 C12 CPX sing 75 n n C16 H161 CPX sing 76 n n C16 H162 CPX sing 77 n n C12 C10 CPX sing 78 n n C12 H12 CPX sing 79 n n C26 N4 CPX sing 80 n n C26 N3 CPX sing 81 n n N4 C29 CPX sing 82 n n N4 HN4 CPX sing 83 n n C29 C30 CPX sing 84 n n C29 C28 CPX sing 85 n n C29 H29 CPX sing 86 n n C30 C32 CPX sing 87 n n C30 H301 CPX sing 88 n n C30 H302 CPX sing 89 n n C32 C31 CPX sing 90 n n C32 H321 CPX sing 91 n n C32 H322 CPX sing 92 n n C31 C28 CPX sing 93 n n C31 H311 CPX sing 94 n n C31 H312 CPX sing 95 n n C28 H281 CPX sing 96 n n C28 H282 CPX sing 97 n n N3 C13 CPX sing 98 n n N3 HN3 CPX sing 99 n n C13 C19 CPX sing 100 n n C13 C14 CPX sing 101 n n C13 H13 CPX sing 102 n n C19 C22 CPX sing 103 n n C19 C18 CPX sing 104 n n C19 H19 CPX sing 105 n n C22 H221 CPX sing 106 n n C22 H222 CPX sing 107 n n C22 H223 CPX sing 108 n n C18 H181 CPX sing 109 n n C18 H182 CPX sing 110 n n C18 H183 CPX sing 111 n n C14 O15 CPX doub 112 n n C14 N2 CPX sing 113 n n N2 C6 CPX sing 114 n n N2 C7 CPX sing 115 n n C6 C8 CPX sing 116 n n C6 C25 CPX sing 117 n n C6 H6 CPX sing 118 n n C8 C9 CPX sing 119 n n C8 N1 CPX sing 120 n n C8 H8 CPX sing 121 n n C9 C7 CPX sing 122 n n C9 H91 CPX sing 123 n n C9 H92 CPX sing 124 n n C7 H71 CPX sing 125 n n C7 H72 CPX sing 126 n n N1 C10 CPX sing 127 n n N1 HN1 CPX sing 128 n n C10 O11 CPX doub 129 n n C25 C24 CPX sing 130 n n C25 C23 CPX sing 131 n n C25 C20 CPX sing 132 n n C24 O5 CPX doub 133 n n C24 H24 CPX sing 134 n n C23 C21 CPX sing 135 n n C23 H231 CPX sing 136 n n C23 H232 CPX sing 137 n n C21 C20 CPX sing 138 n n C21 H211 CPX sing 139 n n C21 H212 CPX sing 140 n n C20 H201 CPX sing 141 n n C20 H202 CPX sing 142 n n # _atom_sites.entry_id 1RTL _atom_sites.fract_transf_matrix[1][1] 0.004463 _atom_sites.fract_transf_matrix[1][2] 0.002577 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005153 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013211 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 301 301 ZN ZN . F 4 CPX A 1 201 201 CPX CPX . G 3 ZN B 1 301 301 ZN ZN . H 5 HOH A 1 302 2 HOH HOH . H 5 HOH A 2 303 4 HOH HOH . H 5 HOH A 3 304 5 HOH HOH . H 5 HOH A 4 305 6 HOH HOH . H 5 HOH A 5 306 7 HOH HOH . H 5 HOH A 6 307 8 HOH HOH . H 5 HOH A 7 308 9 HOH HOH . H 5 HOH A 8 309 11 HOH HOH . H 5 HOH A 9 310 12 HOH HOH . H 5 HOH A 10 311 13 HOH HOH . H 5 HOH A 11 312 14 HOH HOH . H 5 HOH A 12 313 15 HOH HOH . H 5 HOH A 13 314 16 HOH HOH . H 5 HOH A 14 315 17 HOH HOH . H 5 HOH A 15 316 18 HOH HOH . H 5 HOH A 16 317 20 HOH HOH . H 5 HOH A 17 318 22 HOH HOH . H 5 HOH A 18 319 23 HOH HOH . H 5 HOH A 19 320 24 HOH HOH . H 5 HOH A 20 321 25 HOH HOH . H 5 HOH A 21 322 26 HOH HOH . H 5 HOH A 22 323 27 HOH HOH . H 5 HOH A 23 324 28 HOH HOH . H 5 HOH A 24 325 29 HOH HOH . H 5 HOH A 25 326 30 HOH HOH . H 5 HOH A 26 327 31 HOH HOH . H 5 HOH A 27 328 32 HOH HOH . H 5 HOH A 28 329 33 HOH HOH . H 5 HOH A 29 330 34 HOH HOH . H 5 HOH A 30 331 35 HOH HOH . H 5 HOH A 31 332 36 HOH HOH . H 5 HOH A 32 333 37 HOH HOH . H 5 HOH A 33 334 38 HOH HOH . H 5 HOH A 34 335 39 HOH HOH . H 5 HOH A 35 336 82 HOH HOH . H 5 HOH A 36 337 83 HOH HOH . H 5 HOH A 37 338 84 HOH HOH . H 5 HOH A 38 339 85 HOH HOH . H 5 HOH A 39 340 86 HOH HOH . H 5 HOH A 40 341 87 HOH HOH . H 5 HOH A 41 342 88 HOH HOH . H 5 HOH A 42 343 89 HOH HOH . H 5 HOH A 43 344 90 HOH HOH . H 5 HOH A 44 345 91 HOH HOH . H 5 HOH A 45 346 92 HOH HOH . H 5 HOH A 46 347 93 HOH HOH . H 5 HOH A 47 348 94 HOH HOH . H 5 HOH A 48 349 95 HOH HOH . H 5 HOH A 49 350 102 HOH HOH . I 5 HOH B 1 302 40 HOH HOH . I 5 HOH B 2 303 41 HOH HOH . I 5 HOH B 3 304 43 HOH HOH . I 5 HOH B 4 305 44 HOH HOH . I 5 HOH B 5 306 46 HOH HOH . I 5 HOH B 6 307 47 HOH HOH . I 5 HOH B 7 308 48 HOH HOH . I 5 HOH B 8 309 50 HOH HOH . I 5 HOH B 9 310 52 HOH HOH . I 5 HOH B 10 311 53 HOH HOH . I 5 HOH B 11 312 55 HOH HOH . I 5 HOH B 12 313 56 HOH HOH . I 5 HOH B 13 314 57 HOH HOH . I 5 HOH B 14 315 60 HOH HOH . I 5 HOH B 15 316 61 HOH HOH . I 5 HOH B 16 317 62 HOH HOH . I 5 HOH B 17 318 63 HOH HOH . I 5 HOH B 18 319 64 HOH HOH . I 5 HOH B 19 320 67 HOH HOH . I 5 HOH B 20 321 68 HOH HOH . I 5 HOH B 21 322 70 HOH HOH . I 5 HOH B 22 323 71 HOH HOH . I 5 HOH B 23 324 72 HOH HOH . I 5 HOH B 24 325 73 HOH HOH . I 5 HOH B 25 326 74 HOH HOH . I 5 HOH B 26 327 75 HOH HOH . I 5 HOH B 27 328 76 HOH HOH . I 5 HOH B 28 329 77 HOH HOH . I 5 HOH B 29 330 78 HOH HOH . I 5 HOH B 30 331 79 HOH HOH . I 5 HOH B 31 332 96 HOH HOH . I 5 HOH B 32 333 97 HOH HOH . I 5 HOH B 33 334 98 HOH HOH . I 5 HOH B 34 335 99 HOH HOH . I 5 HOH B 35 336 100 HOH HOH . I 5 HOH B 36 337 101 HOH HOH . J 5 HOH C 1 42 1 HOH HOH . J 5 HOH C 2 43 3 HOH HOH . J 5 HOH C 3 44 10 HOH HOH . J 5 HOH C 4 45 19 HOH HOH . J 5 HOH C 5 46 21 HOH HOH . K 5 HOH D 1 42 42 HOH HOH . K 5 HOH D 2 45 45 HOH HOH . K 5 HOH D 3 49 49 HOH HOH . K 5 HOH D 4 51 51 HOH HOH . K 5 HOH D 5 54 54 HOH HOH . K 5 HOH D 6 58 58 HOH HOH . K 5 HOH D 7 59 59 HOH HOH . K 5 HOH D 8 65 65 HOH HOH . K 5 HOH D 9 66 66 HOH HOH . K 5 HOH D 10 69 69 HOH HOH . K 5 HOH D 11 80 80 HOH HOH . K 5 HOH D 12 81 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O27 CPX . . . F 4 4.826 30.83 12.265 1 84.21 ? O27 CPX 201 A 1 HETATM 2 C C17 CPX . . . F 4 6.625 23.469 16.746 1 58 ? C17 CPX 201 A 1 HETATM 3 C C16 CPX . . . F 4 5.302 22.885 16.304 1 57.14 ? C16 CPX 201 A 1 HETATM 4 C C12 CPX . . . F 4 6.537 22.611 15.488 1 58.62 ? C12 CPX 201 A 1 HETATM 5 C C26 CPX . . . F 4 5.802 31.463 11.792 1 86.07 ? C26 CPX 201 A 1 HETATM 6 N N4 CPX . . . F 4 6.245 32.749 11.929 1 97.54 ? N4 CPX 201 A 1 HETATM 7 C C29 CPX . . . F 4 6.04 34.104 12.464 1 102.4 ? C29 CPX 201 A 1 HETATM 8 C C30 CPX . . . F 4 7.202 34.678 13.424 1 100.39 ? C30 CPX 201 A 1 HETATM 9 C C32 CPX . . . F 4 8.122 35.618 12.615 1 99.28 ? C32 CPX 201 A 1 HETATM 10 C C31 CPX . . . F 4 7.497 35.75 11.219 1 100.1 ? C31 CPX 201 A 1 HETATM 11 C C28 CPX . . . F 4 6.061 35.168 11.302 1 99.36 ? C28 CPX 201 A 1 HETATM 12 N N3 CPX . . . F 4 6.675 30.783 10.939 1 76.19 ? N3 CPX 201 A 1 HETATM 13 C C13 CPX . . . F 4 6.819 29.448 10.432 1 68.42 ? C13 CPX 201 A 1 HETATM 14 C C19 CPX . . . F 4 7.607 29.719 9.135 1 72.05 ? C19 CPX 201 A 1 HETATM 15 C C22 CPX . . . F 4 8.557 28.573 8.783 1 67.4 ? C22 CPX 201 A 1 HETATM 16 C C18 CPX . . . F 4 6.586 30.085 8.069 1 73.42 ? C18 CPX 201 A 1 HETATM 17 C C14 CPX . . . F 4 7.514 28.543 11.482 1 60.22 ? C14 CPX 201 A 1 HETATM 18 O O15 CPX . . . F 4 8.296 29.129 12.285 1 61.35 ? O15 CPX 201 A 1 HETATM 19 N N2 CPX . . . F 4 7.252 27.194 11.56 1 60.41 ? N2 CPX 201 A 1 HETATM 20 C C6 CPX . . . F 4 7.858 26.397 12.596 1 55.79 ? C6 CPX 201 A 1 HETATM 21 C C8 CPX . . . F 4 6.746 25.194 12.691 1 54.59 ? C8 CPX 201 A 1 HETATM 22 C C9 CPX . . . F 4 5.758 25.787 12.026 1 55 ? C9 CPX 201 A 1 HETATM 23 C C7 CPX . . . F 4 6.409 26.328 10.719 1 47.04 ? C7 CPX 201 A 1 HETATM 24 N N1 CPX . . . F 4 6.267 24.676 14.057 1 50.57 ? N1 CPX 201 A 1 HETATM 25 C C10 CPX . . . F 4 6.834 23.407 14.234 1 59.25 ? C10 CPX 201 A 1 HETATM 26 O O11 CPX . . . F 4 7.639 22.818 13.442 1 71.51 ? O11 CPX 201 A 1 HETATM 27 C C25 CPX . . . F 4 9.243 26.084 12.889 1 51.83 ? C25 CPX 201 A 1 HETATM 28 C C24 CPX . . . F 4 9.566 25.284 14.179 1 45.37 ? C24 CPX 201 A 1 HETATM 29 O O5 CPX . . . F 4 9.821 24.093 13.69 1 66.4 ? O5 CPX 201 A 1 HETATM 30 C C23 CPX . . . F 4 10.438 27.001 12.914 1 50.92 ? C23 CPX 201 A 1 HETATM 31 C C21 CPX . . . F 4 10.907 26.614 11.536 1 49.7 ? C21 CPX 201 A 1 HETATM 32 C C20 CPX . . . F 4 10.052 25.367 11.744 1 49.86 ? C20 CPX 201 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 365 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #