data_1RTS
#
_model_server_result.job_id            MCeD66VQzgmtBLlynvVURw 
_model_server_result.datetime_utc      '2024-11-05 23:30:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1rts 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":308}' 
#
_entry.id    1RTS 
#
_exptl.entry_id    1RTS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              308.182 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2'-DEOXYURIDINE 5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.8 
_cell.angle_gamma         90 
_cell.entry_id            1RTS 
_cell.length_a            159.6 
_cell.length_b            88.5 
_cell.length_c            68.8 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1RTS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C9 H13 N2 O8 P' 
_chem_comp.formula_weight    308.182 
_chem_comp.id                UMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "2'-DEOXYURIDINE 5'-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     DUMP 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 UMP sing 412 n n 
N1 C6 UMP sing 413 n n 
N1 C1' UMP sing 414 n n 
C2 N3 UMP sing 415 n n 
C2 O2 UMP doub 416 n n 
N3 C4 UMP sing 417 n n 
N3 HN3 UMP sing 418 n n 
C4 C5 UMP sing 419 n n 
C4 O4 UMP doub 420 n n 
C5 C6 UMP doub 421 n n 
C5 H5 UMP sing 422 n n 
C6 H6 UMP sing 423 n n 
C1' C2' UMP sing 424 n n 
C1' O4' UMP sing 425 n n 
C1' H1' UMP sing 426 n n 
C2' C3' UMP sing 427 n n 
C2' H2' UMP sing 428 n n 
C2' "H2''" UMP sing 429 n n 
C3' C4' UMP sing 430 n n 
C3' O3' UMP sing 431 n n 
C3' H3' UMP sing 432 n n 
C4' O4' UMP sing 433 n n 
C4' C5' UMP sing 434 n n 
C4' H4' UMP sing 435 n n 
O3' HO3' UMP sing 436 n n 
C5' O5' UMP sing 437 n n 
C5' H5' UMP sing 438 n n 
C5' "H5''" UMP sing 439 n n 
O5' P UMP sing 440 n n 
P OP1 UMP doub 441 n n 
P OP2 UMP sing 442 n n 
P OP3 UMP sing 443 n n 
OP2 HOP2 UMP sing 444 n n 
OP3 HOP3 UMP sing 445 n n 
#
_atom_sites.entry_id                     1RTS 
_atom_sites.fract_transf_matrix[1][1]    0.006266 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000858 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011299 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014671 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 UMP A 1 308 308 UMP UMP . 
D 3 D16 A 1 309 309 D16 D16 . 
E 2 UMP B 1 408 408 UMP UMP . 
F 3 D16 B 1 409 409 D16 D16 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 UMP . . . C 2 96.626 -11.334 34.605 1 19.09 ? N1 UMP 308 A 1 
HETATM 2 C C2 UMP . . . C 2 97.393 -12.288 35.257 1 19.09 ? C2 UMP 308 A 1 
HETATM 3 N N3 UMP . . . C 2 96.924 -13.573 35.155 1 19.09 ? N3 UMP 308 A 1 
HETATM 4 C C4 UMP . . . C 2 95.803 -13.997 34.474 1 19.09 ? C4 UMP 308 A 1 
HETATM 5 C C5 UMP . . . C 2 95.088 -12.961 33.796 1 19.09 ? C5 UMP 308 A 1 
HETATM 6 C C6 UMP . . . C 2 95.511 -11.697 33.883 1 19.09 ? C6 UMP 308 A 1 
HETATM 7 O O2 UMP . . . C 2 98.413 -12.02 35.871 1 19.09 ? O2 UMP 308 A 1 
HETATM 8 O O4 UMP . . . C 2 95.469 -15.179 34.542 1 19.09 ? O4 UMP 308 A 1 
HETATM 9 C C1' UMP . . . C 2 97.029 -9.923 34.732 1 19.09 ? C1' UMP 308 A 1 
HETATM 10 C C2' UMP . . . C 2 98.446 -9.616 34.282 1 19.09 ? C2' UMP 308 A 1 
HETATM 11 C C3' UMP . . . C 2 98.345 -8.167 33.845 1 19.09 ? C3' UMP 308 A 1 
HETATM 12 C C4' UMP . . . C 2 96.917 -8.055 33.312 1 19.09 ? C4' UMP 308 A 1 
HETATM 13 O O3' UMP . . . C 2 98.48 -7.322 34.992 1 19.09 ? O3' UMP 308 A 1 
HETATM 14 O O4' UMP . . . C 2 96.175 -9.145 33.908 1 19.09 ? O4' UMP 308 A 1 
HETATM 15 C C5' UMP . . . C 2 96.808 -8.124 31.807 1 19.09 ? C5' UMP 308 A 1 
HETATM 16 O O5' UMP . . . C 2 97.365 -6.934 31.207 1 19.09 ? O5' UMP 308 A 1 
HETATM 17 P P UMP . . . C 2 97.768 -6.904 29.628 1 19.09 ? P UMP 308 A 1 
HETATM 18 O OP1 UMP . . . C 2 96.524 -7.33 28.864 1 19.09 ? OP1 UMP 308 A 1 
HETATM 19 O OP2 UMP . . . C 2 98.179 -5.475 29.312 1 19.09 ? OP2 UMP 308 A 1 
HETATM 20 O OP3 UMP . . . C 2 98.915 -7.895 29.516 1 19.09 ? OP3 UMP 308 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           222 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           20 
#