data_1RTX # _model_server_result.job_id 7xMlq-Slft8HJF66wzqaQg _model_server_result.datetime_utc '2024-11-26 11:52:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rtx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":126}' # _entry.id 1RTX # _exptl.entry_id 1RTX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RTX _cell.length_a 42.5 _cell.length_b 46 _cell.length_c 61 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RTX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 14 A ASP 15 3_555 B CD CD . A CD 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc2 A OD2 ASP 14 A ASP 15 3_555 B CD CD . A CD 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc3 A OD2 ASP 18 A ASP 19 3_555 B CD CD . A CD 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc4 A ND1 HIS 32 A HIS 33 1_555 B CD CD . A CD 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc5 A O HIS 32 A HIS 33 1_555 B CD CD . A CD 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc6 A NE2 HIS 45 A HIS 46 1_555 F FE HEM . A HEM 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc7 A NE2 HIS 69 A HIS 70 1_555 F FE HEM . A HEM 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc8 A OE1 GLU 71 A GLU 72 4_555 C CD CD . A CD 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc9 A OE2 GLU 71 A GLU 72 4_555 C CD CD . A CD 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc10 A ND1 HIS 76 A HIS 77 1_555 B CD CD . A CD 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc11 A OD2 ASP 119 A ASP 120 1_555 C CD CD . A CD 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? metalc ? metalc12 A OD1 ASP 119 A ASP 120 1_555 C CD CD . A CD 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc13 C CD CD . A CD 127 1_555 G O HOH . A HOH 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc14 C CD CD . A CD 127 1_555 G O HOH . A HOH 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc15 E K K . A K 129 1_555 G O HOH . A HOH 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.413 ? metalc ? metalc16 E K K . A K 129 1_555 G O HOH . A HOH 162 3_545 ? ? ? ? ? ? ? ? ? ? ? ? 3.519 ? metalc ? metalc17 E K K . A K 129 1_555 G O HOH . A HOH 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc18 E K K . A K 129 1_555 G O HOH . A HOH 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1RTX _atom_sites.fract_transf_matrix[1][1] 0.023529 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021739 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016393 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 126 126 CD CD . C 2 CD A 1 127 127 CD CD . D 3 SO4 A 1 128 128 SO4 SO4 . E 4 K A 1 129 129 K K . F 5 HEM A 1 125 125 HEM HEM . G 6 HOH A 1 130 1 HOH HOH . G 6 HOH A 2 131 2 HOH HOH . G 6 HOH A 3 132 3 HOH HOH . G 6 HOH A 4 133 4 HOH HOH . G 6 HOH A 5 134 5 HOH HOH . G 6 HOH A 6 135 6 HOH HOH . G 6 HOH A 7 136 7 HOH HOH . G 6 HOH A 8 137 8 HOH HOH . G 6 HOH A 9 138 9 HOH HOH . G 6 HOH A 10 139 10 HOH HOH . G 6 HOH A 11 140 11 HOH HOH . G 6 HOH A 12 141 12 HOH HOH . G 6 HOH A 13 142 13 HOH HOH . G 6 HOH A 14 143 14 HOH HOH . G 6 HOH A 15 144 15 HOH HOH . G 6 HOH A 16 145 16 HOH HOH . G 6 HOH A 17 146 17 HOH HOH . G 6 HOH A 18 147 18 HOH HOH . G 6 HOH A 19 148 19 HOH HOH . G 6 HOH A 20 149 20 HOH HOH . G 6 HOH A 21 150 21 HOH HOH . G 6 HOH A 22 151 22 HOH HOH . G 6 HOH A 23 152 23 HOH HOH . G 6 HOH A 24 153 24 HOH HOH . G 6 HOH A 25 154 25 HOH HOH . G 6 HOH A 26 155 26 HOH HOH . G 6 HOH A 27 156 27 HOH HOH . G 6 HOH A 28 157 28 HOH HOH . G 6 HOH A 29 158 29 HOH HOH . G 6 HOH A 30 159 30 HOH HOH . G 6 HOH A 31 160 31 HOH HOH . G 6 HOH A 32 161 32 HOH HOH . G 6 HOH A 33 162 33 HOH HOH . G 6 HOH A 34 163 34 HOH HOH . G 6 HOH A 35 164 35 HOH HOH . G 6 HOH A 36 165 36 HOH HOH . G 6 HOH A 37 166 37 HOH HOH . G 6 HOH A 38 167 38 HOH HOH . G 6 HOH A 39 168 39 HOH HOH . G 6 HOH A 40 169 40 HOH HOH . G 6 HOH A 41 170 41 HOH HOH . G 6 HOH A 42 171 42 HOH HOH . G 6 HOH A 43 172 43 HOH HOH . G 6 HOH A 44 173 44 HOH HOH . G 6 HOH A 45 174 45 HOH HOH . G 6 HOH A 46 175 46 HOH HOH . G 6 HOH A 47 176 47 HOH HOH . G 6 HOH A 48 177 48 HOH HOH . G 6 HOH A 49 178 49 HOH HOH . G 6 HOH A 50 179 50 HOH HOH . G 6 HOH A 51 180 51 HOH HOH . G 6 HOH A 52 181 52 HOH HOH . G 6 HOH A 53 182 53 HOH HOH . G 6 HOH A 54 183 54 HOH HOH . G 6 HOH A 55 184 55 HOH HOH . G 6 HOH A 56 185 56 HOH HOH . G 6 HOH A 57 186 57 HOH HOH . G 6 HOH A 58 187 58 HOH HOH . G 6 HOH A 59 188 59 HOH HOH . G 6 HOH A 60 189 60 HOH HOH . G 6 HOH A 61 190 61 HOH HOH . G 6 HOH A 62 191 62 HOH HOH . G 6 HOH A 63 192 63 HOH HOH . G 6 HOH A 64 193 64 HOH HOH . G 6 HOH A 65 194 65 HOH HOH . G 6 HOH A 66 195 66 HOH HOH . G 6 HOH A 67 196 67 HOH HOH . G 6 HOH A 68 197 68 HOH HOH . G 6 HOH A 69 198 69 HOH HOH . G 6 HOH A 70 199 70 HOH HOH . G 6 HOH A 71 200 71 HOH HOH . G 6 HOH A 72 201 72 HOH HOH . G 6 HOH A 73 202 73 HOH HOH . G 6 HOH A 74 203 74 HOH HOH . G 6 HOH A 75 204 75 HOH HOH . G 6 HOH A 76 205 76 HOH HOH . G 6 HOH A 77 206 77 HOH HOH . G 6 HOH A 78 207 78 HOH HOH . G 6 HOH A 79 208 79 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -3.103 _atom_site.Cartn_y 15.334 _atom_site.Cartn_z 11.212 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 23.31 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 126 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 395 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #