data_1RTY # _model_server_result.job_id sObsTWjv0EsTtrKZqTknRQ _model_server_result.datetime_utc '2024-12-02 10:52:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rty # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":194}' # _entry.id 1RTY # _exptl.entry_id 1RTY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RTY _cell.length_a 104.35 _cell.length_b 104.35 _cell.length_c 55.985 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RTY _symmetry.cell_setting ? _symmetry.Int_Tables_number 75 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 139 A LEU 139 1_555 A N MSE 140 A MSE 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C MSE 140 A MSE 140 1_555 A N LYS 141 A LYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 B C MSE 1 B MSE 1 1_555 B N LYS 2 B LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 B C LEU 139 B LEU 139 1_555 B N MSE 140 B MSE 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 B C MSE 140 B MSE 140 1_555 B N LYS 141 B LYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 C C LEU 139 C LEU 139 1_555 C N MSE 140 C MSE 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 C C MSE 140 C MSE 140 1_555 C N LYS 141 C LYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 279 n n P O2 PO4 sing 280 n n P O3 PO4 sing 281 n n P O4 PO4 sing 282 n n # _atom_sites.entry_id 1RTY _atom_sites.fract_transf_matrix[1][1] 0.009583 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009583 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017862 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 PO4 A 1 194 185 PO4 PO4 . E 3 HOH A 1 195 1 HOH HOH . E 3 HOH A 2 196 2 HOH HOH . E 3 HOH A 3 197 9 HOH HOH . E 3 HOH A 4 198 10 HOH HOH . E 3 HOH A 5 199 18 HOH HOH . E 3 HOH A 6 200 19 HOH HOH . E 3 HOH A 7 201 39 HOH HOH . E 3 HOH A 8 202 40 HOH HOH . E 3 HOH A 9 203 41 HOH HOH . E 3 HOH A 10 204 42 HOH HOH . E 3 HOH A 11 205 43 HOH HOH . E 3 HOH A 12 206 44 HOH HOH . E 3 HOH A 13 207 45 HOH HOH . E 3 HOH A 14 208 46 HOH HOH . E 3 HOH A 15 209 47 HOH HOH . E 3 HOH A 16 210 49 HOH HOH . E 3 HOH A 17 211 50 HOH HOH . E 3 HOH A 18 212 51 HOH HOH . E 3 HOH A 19 213 53 HOH HOH . E 3 HOH A 20 214 54 HOH HOH . E 3 HOH A 21 215 55 HOH HOH . E 3 HOH A 22 216 56 HOH HOH . E 3 HOH A 23 217 57 HOH HOH . E 3 HOH A 24 218 59 HOH HOH . E 3 HOH A 25 219 60 HOH HOH . E 3 HOH A 26 220 61 HOH HOH . E 3 HOH A 27 221 62 HOH HOH . E 3 HOH A 28 222 63 HOH HOH . E 3 HOH A 29 223 65 HOH HOH . E 3 HOH A 30 224 66 HOH HOH . E 3 HOH A 31 225 67 HOH HOH . E 3 HOH A 32 226 68 HOH HOH . E 3 HOH A 33 227 69 HOH HOH . E 3 HOH A 34 228 70 HOH HOH . E 3 HOH A 35 229 71 HOH HOH . E 3 HOH A 36 230 72 HOH HOH . E 3 HOH A 37 231 73 HOH HOH . E 3 HOH A 38 232 124 HOH HOH . E 3 HOH A 39 233 125 HOH HOH . E 3 HOH A 40 234 127 HOH HOH . E 3 HOH A 41 235 128 HOH HOH . E 3 HOH A 42 236 129 HOH HOH . E 3 HOH A 43 237 130 HOH HOH . E 3 HOH A 44 238 131 HOH HOH . E 3 HOH A 45 239 148 HOH HOH . E 3 HOH A 46 240 149 HOH HOH . E 3 HOH A 47 241 155 HOH HOH . E 3 HOH A 48 242 156 HOH HOH . E 3 HOH A 49 243 157 HOH HOH . E 3 HOH A 50 244 158 HOH HOH . E 3 HOH A 51 245 159 HOH HOH . E 3 HOH A 52 246 161 HOH HOH . E 3 HOH A 53 247 162 HOH HOH . E 3 HOH A 54 248 163 HOH HOH . E 3 HOH A 55 249 164 HOH HOH . E 3 HOH A 56 250 165 HOH HOH . E 3 HOH A 57 251 166 HOH HOH . E 3 HOH A 58 252 183 HOH HOH . F 3 HOH B 1 194 3 HOH HOH . F 3 HOH B 2 195 11 HOH HOH . F 3 HOH B 3 196 13 HOH HOH . F 3 HOH B 4 197 14 HOH HOH . F 3 HOH B 5 198 15 HOH HOH . F 3 HOH B 6 199 16 HOH HOH . F 3 HOH B 7 200 17 HOH HOH . F 3 HOH B 8 201 22 HOH HOH . F 3 HOH B 9 202 23 HOH HOH . F 3 HOH B 10 203 24 HOH HOH . F 3 HOH B 11 204 25 HOH HOH . F 3 HOH B 12 205 26 HOH HOH . F 3 HOH B 13 206 29 HOH HOH . F 3 HOH B 14 207 30 HOH HOH . F 3 HOH B 15 208 31 HOH HOH . F 3 HOH B 16 209 32 HOH HOH . F 3 HOH B 17 210 33 HOH HOH . F 3 HOH B 18 211 34 HOH HOH . F 3 HOH B 19 212 35 HOH HOH . F 3 HOH B 20 213 36 HOH HOH . F 3 HOH B 21 214 37 HOH HOH . F 3 HOH B 22 215 38 HOH HOH . F 3 HOH B 23 216 48 HOH HOH . F 3 HOH B 24 217 52 HOH HOH . F 3 HOH B 25 218 58 HOH HOH . F 3 HOH B 26 219 75 HOH HOH . F 3 HOH B 27 220 76 HOH HOH . F 3 HOH B 28 221 78 HOH HOH . F 3 HOH B 29 222 80 HOH HOH . F 3 HOH B 30 223 81 HOH HOH . F 3 HOH B 31 224 82 HOH HOH . F 3 HOH B 32 225 83 HOH HOH . F 3 HOH B 33 226 84 HOH HOH . F 3 HOH B 34 227 85 HOH HOH . F 3 HOH B 35 228 86 HOH HOH . F 3 HOH B 36 229 87 HOH HOH . F 3 HOH B 37 230 88 HOH HOH . F 3 HOH B 38 231 89 HOH HOH . F 3 HOH B 39 232 90 HOH HOH . F 3 HOH B 40 233 91 HOH HOH . F 3 HOH B 41 234 92 HOH HOH . F 3 HOH B 42 235 93 HOH HOH . F 3 HOH B 43 236 94 HOH HOH . F 3 HOH B 44 237 95 HOH HOH . F 3 HOH B 45 238 96 HOH HOH . F 3 HOH B 46 239 97 HOH HOH . F 3 HOH B 47 240 98 HOH HOH . F 3 HOH B 48 241 99 HOH HOH . F 3 HOH B 49 242 100 HOH HOH . F 3 HOH B 50 243 101 HOH HOH . F 3 HOH B 51 244 102 HOH HOH . F 3 HOH B 52 245 103 HOH HOH . F 3 HOH B 53 246 104 HOH HOH . F 3 HOH B 54 247 105 HOH HOH . F 3 HOH B 55 248 106 HOH HOH . F 3 HOH B 56 249 107 HOH HOH . F 3 HOH B 57 250 108 HOH HOH . F 3 HOH B 58 251 115 HOH HOH . F 3 HOH B 59 252 120 HOH HOH . F 3 HOH B 60 253 122 HOH HOH . F 3 HOH B 61 254 123 HOH HOH . F 3 HOH B 62 255 126 HOH HOH . F 3 HOH B 63 256 133 HOH HOH . F 3 HOH B 64 257 135 HOH HOH . F 3 HOH B 65 258 136 HOH HOH . F 3 HOH B 66 259 137 HOH HOH . F 3 HOH B 67 260 138 HOH HOH . F 3 HOH B 68 261 139 HOH HOH . F 3 HOH B 69 262 140 HOH HOH . F 3 HOH B 70 263 141 HOH HOH . F 3 HOH B 71 264 142 HOH HOH . F 3 HOH B 72 265 143 HOH HOH . F 3 HOH B 73 266 144 HOH HOH . F 3 HOH B 74 267 152 HOH HOH . F 3 HOH B 75 268 153 HOH HOH . F 3 HOH B 76 269 154 HOH HOH . F 3 HOH B 77 270 167 HOH HOH . F 3 HOH B 78 271 168 HOH HOH . F 3 HOH B 79 272 169 HOH HOH . F 3 HOH B 80 273 170 HOH HOH . F 3 HOH B 81 274 171 HOH HOH . F 3 HOH B 82 275 172 HOH HOH . F 3 HOH B 83 276 173 HOH HOH . F 3 HOH B 84 277 174 HOH HOH . F 3 HOH B 85 278 175 HOH HOH . F 3 HOH B 86 279 176 HOH HOH . F 3 HOH B 87 280 177 HOH HOH . F 3 HOH B 88 281 180 HOH HOH . F 3 HOH B 89 282 182 HOH HOH . G 3 HOH C 1 194 4 HOH HOH . G 3 HOH C 2 195 5 HOH HOH . G 3 HOH C 3 196 6 HOH HOH . G 3 HOH C 4 197 7 HOH HOH . G 3 HOH C 5 198 8 HOH HOH . G 3 HOH C 6 199 12 HOH HOH . G 3 HOH C 7 200 20 HOH HOH . G 3 HOH C 8 201 21 HOH HOH . G 3 HOH C 9 202 27 HOH HOH . G 3 HOH C 10 203 28 HOH HOH . G 3 HOH C 11 204 64 HOH HOH . G 3 HOH C 12 205 74 HOH HOH . G 3 HOH C 13 206 77 HOH HOH . G 3 HOH C 14 207 79 HOH HOH . G 3 HOH C 15 208 109 HOH HOH . G 3 HOH C 16 209 110 HOH HOH . G 3 HOH C 17 210 111 HOH HOH . G 3 HOH C 18 211 112 HOH HOH . G 3 HOH C 19 212 113 HOH HOH . G 3 HOH C 20 213 114 HOH HOH . G 3 HOH C 21 214 116 HOH HOH . G 3 HOH C 22 215 117 HOH HOH . G 3 HOH C 23 216 118 HOH HOH . G 3 HOH C 24 217 119 HOH HOH . G 3 HOH C 25 218 121 HOH HOH . G 3 HOH C 26 219 132 HOH HOH . G 3 HOH C 27 220 134 HOH HOH . G 3 HOH C 28 221 145 HOH HOH . G 3 HOH C 29 222 146 HOH HOH . G 3 HOH C 30 223 147 HOH HOH . G 3 HOH C 31 224 150 HOH HOH . G 3 HOH C 32 225 151 HOH HOH . G 3 HOH C 33 226 160 HOH HOH . G 3 HOH C 34 227 178 HOH HOH . G 3 HOH C 35 228 179 HOH HOH . G 3 HOH C 36 229 181 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 2 41.243 16.5 -3.741 1 47.41 ? P PO4 194 A 1 HETATM 2 O O1 PO4 . . . D 2 40.601 15.264 -3.417 1 46.48 ? O1 PO4 194 A 1 HETATM 3 O O2 PO4 . . . D 2 40.337 17.467 -4.335 1 47.94 ? O2 PO4 194 A 1 HETATM 4 O O3 PO4 . . . D 2 41.917 17.084 -2.403 1 47.73 ? O3 PO4 194 A 1 HETATM 5 O O4 PO4 . . . D 2 42.503 16.397 -4.606 1 49.23 ? O4 PO4 194 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 372 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #