data_1RU2 # _model_server_result.job_id nvvO1ZuuFARygf2WxMQUKQ _model_server_result.datetime_utc '2024-11-24 18:48:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ru2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":181}' # _entry.id 1RU2 # _exptl.entry_id 1RU2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 193.163 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-HYDROXYMETHYLPTERIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RU2 _cell.length_a 51.609 _cell.length_b 63.156 _cell.length_c 36.201 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RU2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 89 A ASP 95 1_555 B MG MG . A MG 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc2 A OD2 ASP 89 A ASP 95 1_555 C MG MG . A MG 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc3 A OD1 ASP 91 A ASP 97 1_555 B MG MG . A MG 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc4 A OD2 ASP 91 A ASP 97 1_555 C MG MG . A MG 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc5 B MG MG . A MG 161 1_555 E O1B APC . A APC 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc6 B MG MG . A MG 161 1_555 E O1A APC . A APC 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc7 B MG MG . A MG 161 1_555 G O HOH . A HOH 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc8 B MG MG . A MG 161 1_555 G O HOH . A HOH 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc9 C MG MG . A MG 162 1_555 E O3G APC . A APC 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc10 C MG MG . A MG 162 1_555 E O1B APC . A APC 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc11 C MG MG . A MG 162 1_555 F O6A HHR . A HHR 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc12 C MG MG . A MG 162 1_555 G O HOH . A HOH 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? # _chem_comp.formula 'C7 H7 N5 O2' _chem_comp.formula_weight 193.163 _chem_comp.id HHR _chem_comp.mon_nstd_flag . _chem_comp.name 6-HYDROXYMETHYLPTERIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 N8 HHR doub 167 n y C7 C6 HHR sing 168 n y C7 H71 HHR sing 169 n n N8 C9 HHR sing 170 n y C9 N1 HHR sing 171 n y C9 C10 HHR doub 172 n y N1 C2 HHR doub 173 n y C2 N2 HHR sing 174 n n C2 N3 HHR sing 175 n y N2 HN21 HHR sing 176 n n N2 HN22 HHR sing 177 n n C10 C4 HHR sing 178 n y C10 N5 HHR sing 179 n y C4 N3 HHR sing 180 n y C4 O4 HHR doub 181 n n N3 HN3 HHR sing 182 n n N5 C6 HHR doub 183 n y C6 C6A HHR sing 184 n n C6A O6A HHR sing 185 n n C6A H6A1 HHR sing 186 n n C6A H6A2 HHR sing 187 n n O6A HO6 HHR sing 188 n n # _atom_sites.entry_id 1RU2 _atom_sites.fract_transf_matrix[1][1] 0.019376 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015834 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027624 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 161 161 MG MG . C 2 MG A 1 162 162 MG MG . D 3 CL A 1 163 163 CL CL . E 4 APC A 1 171 171 APC APC . F 5 HHR A 1 181 181 HHR HHR . G 6 HOH A 1 201 201 HOH HOH . G 6 HOH A 2 202 202 HOH HOH . G 6 HOH A 3 203 203 HOH HOH . G 6 HOH A 4 204 204 HOH HOH . G 6 HOH A 5 205 205 HOH HOH . G 6 HOH A 6 206 206 HOH HOH . G 6 HOH A 7 207 207 HOH HOH . G 6 HOH A 8 208 208 HOH HOH . G 6 HOH A 9 209 209 HOH HOH . G 6 HOH A 10 210 210 HOH HOH . G 6 HOH A 11 211 211 HOH HOH . G 6 HOH A 12 212 212 HOH HOH . G 6 HOH A 13 213 213 HOH HOH . G 6 HOH A 14 214 214 HOH HOH . G 6 HOH A 15 215 215 HOH HOH . G 6 HOH A 16 216 216 HOH HOH . G 6 HOH A 17 217 217 HOH HOH . G 6 HOH A 18 218 218 HOH HOH . G 6 HOH A 19 219 219 HOH HOH . G 6 HOH A 20 220 220 HOH HOH . G 6 HOH A 21 221 221 HOH HOH . G 6 HOH A 22 222 222 HOH HOH . G 6 HOH A 23 223 223 HOH HOH . G 6 HOH A 24 224 224 HOH HOH . G 6 HOH A 25 225 225 HOH HOH . G 6 HOH A 26 226 226 HOH HOH . G 6 HOH A 27 227 227 HOH HOH . G 6 HOH A 28 228 228 HOH HOH . G 6 HOH A 29 229 229 HOH HOH . G 6 HOH A 30 230 230 HOH HOH . G 6 HOH A 31 231 231 HOH HOH . G 6 HOH A 32 232 232 HOH HOH . G 6 HOH A 33 233 233 HOH HOH . G 6 HOH A 34 234 234 HOH HOH . G 6 HOH A 35 235 235 HOH HOH . G 6 HOH A 36 236 236 HOH HOH . G 6 HOH A 37 237 237 HOH HOH . G 6 HOH A 38 238 238 HOH HOH . G 6 HOH A 39 239 239 HOH HOH . G 6 HOH A 40 240 240 HOH HOH . G 6 HOH A 41 241 241 HOH HOH . G 6 HOH A 42 242 242 HOH HOH . G 6 HOH A 43 243 243 HOH HOH . G 6 HOH A 44 244 244 HOH HOH . G 6 HOH A 45 245 245 HOH HOH . G 6 HOH A 46 246 246 HOH HOH . G 6 HOH A 47 247 247 HOH HOH . G 6 HOH A 48 248 248 HOH HOH . G 6 HOH A 49 249 249 HOH HOH . G 6 HOH A 50 250 250 HOH HOH . G 6 HOH A 51 251 251 HOH HOH . G 6 HOH A 52 252 252 HOH HOH . G 6 HOH A 53 253 253 HOH HOH . G 6 HOH A 54 254 254 HOH HOH . G 6 HOH A 55 255 255 HOH HOH . G 6 HOH A 56 256 256 HOH HOH . G 6 HOH A 57 257 257 HOH HOH . G 6 HOH A 58 258 258 HOH HOH . G 6 HOH A 59 259 259 HOH HOH . G 6 HOH A 60 260 260 HOH HOH . G 6 HOH A 61 261 261 HOH HOH . G 6 HOH A 62 262 262 HOH HOH . G 6 HOH A 63 263 263 HOH HOH . G 6 HOH A 64 264 264 HOH HOH . G 6 HOH A 65 265 265 HOH HOH . G 6 HOH A 66 266 266 HOH HOH . G 6 HOH A 67 267 267 HOH HOH . G 6 HOH A 68 268 268 HOH HOH . G 6 HOH A 69 269 269 HOH HOH . G 6 HOH A 70 270 270 HOH HOH . G 6 HOH A 71 271 271 HOH HOH . G 6 HOH A 72 272 272 HOH HOH . G 6 HOH A 73 273 273 HOH HOH . G 6 HOH A 74 274 274 HOH HOH . G 6 HOH A 75 275 275 HOH HOH . G 6 HOH A 76 276 276 HOH HOH . G 6 HOH A 77 277 277 HOH HOH . G 6 HOH A 78 278 278 HOH HOH . G 6 HOH A 79 279 279 HOH HOH . G 6 HOH A 80 280 280 HOH HOH . G 6 HOH A 81 281 281 HOH HOH . G 6 HOH A 82 282 282 HOH HOH . G 6 HOH A 83 283 283 HOH HOH . G 6 HOH A 84 284 284 HOH HOH . G 6 HOH A 85 285 285 HOH HOH . G 6 HOH A 86 286 286 HOH HOH . G 6 HOH A 87 287 287 HOH HOH . G 6 HOH A 88 288 288 HOH HOH . G 6 HOH A 89 289 289 HOH HOH . G 6 HOH A 90 290 290 HOH HOH . G 6 HOH A 91 291 291 HOH HOH . G 6 HOH A 92 292 292 HOH HOH . G 6 HOH A 93 293 293 HOH HOH . G 6 HOH A 94 294 294 HOH HOH . G 6 HOH A 95 295 295 HOH HOH . G 6 HOH A 96 296 296 HOH HOH . G 6 HOH A 97 297 297 HOH HOH . G 6 HOH A 98 298 298 HOH HOH . G 6 HOH A 99 299 299 HOH HOH . G 6 HOH A 100 300 300 HOH HOH . G 6 HOH A 101 301 301 HOH HOH . G 6 HOH A 102 302 302 HOH HOH . G 6 HOH A 103 303 303 HOH HOH . G 6 HOH A 104 304 304 HOH HOH . G 6 HOH A 105 305 305 HOH HOH . G 6 HOH A 106 306 306 HOH HOH . G 6 HOH A 107 307 307 HOH HOH . G 6 HOH A 108 308 308 HOH HOH . G 6 HOH A 109 309 309 HOH HOH . G 6 HOH A 110 310 310 HOH HOH . G 6 HOH A 111 311 311 HOH HOH . G 6 HOH A 112 312 312 HOH HOH . G 6 HOH A 113 313 313 HOH HOH . G 6 HOH A 114 314 314 HOH HOH . G 6 HOH A 115 315 315 HOH HOH . G 6 HOH A 116 316 316 HOH HOH . G 6 HOH A 117 317 317 HOH HOH . G 6 HOH A 118 318 318 HOH HOH . G 6 HOH A 119 319 319 HOH HOH . G 6 HOH A 120 320 320 HOH HOH . G 6 HOH A 121 321 321 HOH HOH . G 6 HOH A 122 322 322 HOH HOH . G 6 HOH A 123 323 323 HOH HOH . G 6 HOH A 124 324 324 HOH HOH . G 6 HOH A 125 325 325 HOH HOH . G 6 HOH A 126 326 326 HOH HOH . G 6 HOH A 127 327 327 HOH HOH . G 6 HOH A 128 328 328 HOH HOH . G 6 HOH A 129 329 329 HOH HOH . G 6 HOH A 130 330 330 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 HHR . . . F 5 5.047 23.828 8.297 1 31.74 ? C7 HHR 181 A 1 HETATM 2 N N8 HHR . . . F 5 5.52 24.678 7.383 1 33.93 ? N8 HHR 181 A 1 HETATM 3 C C9 HHR . . . F 5 6.768 24.465 6.903 1 32.15 ? C9 HHR 181 A 1 HETATM 4 N N1 HHR . . . F 5 7.317 25.334 5.935 1 29.79 ? N1 HHR 181 A 1 HETATM 5 C C2 HHR . . . F 5 8.52 25.135 5.468 1 27.96 ? C2 HHR 181 A 1 HETATM 6 N N2 HHR . . . F 5 9.149 25.913 4.529 1 29.32 ? N2 HHR 181 A 1 HETATM 7 C C10 HHR . . . F 5 7.497 23.357 7.397 1 31.55 ? C10 HHR 181 A 1 HETATM 8 C C4 HHR . . . F 5 8.854 23.157 6.851 1 26.79 ? C4 HHR 181 A 1 HETATM 9 N N3 HHR . . . F 5 9.231 24.079 5.929 1 28.95 ? N3 HHR 181 A 1 HETATM 10 O O4 HHR . . . F 5 9.609 22.254 7.17 1 26.91 ? O4 HHR 181 A 1 HETATM 11 N N5 HHR . . . F 5 6.997 22.514 8.319 1 33.29 ? N5 HHR 181 A 1 HETATM 12 C C6 HHR . . . F 5 5.783 22.725 8.783 1 33.15 ? C6 HHR 181 A 1 HETATM 13 C C6A HHR . . . F 5 5.239 21.775 9.813 1 28.45 ? C6A HHR 181 A 1 HETATM 14 O O6A HHR . . . F 5 6.131 20.764 10.274 1 23.72 ? O6A HHR 181 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #