data_1RU3
#
_model_server_result.job_id            XvRqAliByqrcQzebFAI74Q 
_model_server_result.datetime_utc      '2024-11-05 00:40:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ru3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":734}' 
#
_entry.id    1RU3 
#
_exptl.entry_id    1RU3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1RU3 
_cell.length_a            200.31 
_cell.length_b            200.31 
_cell.length_c            169.41 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1RU3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 598 A CYS 598 1_555 A SG CYS 600 A CYS 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? 
metalc ? metalc1 A SG CYS 509 A CYS 509 1_555 D FE1 SF4 . A SF4 733 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
metalc ? metalc2 A SG CYS 512 A CYS 512 1_555 D FE4 SF4 . A SF4 733 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc3 A SG CYS 512 A CYS 512 1_555 B NI NI . A NI 734 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? 
metalc ? metalc4 A SG CYS 521 A CYS 521 1_555 D FE2 SF4 . A SF4 733 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc5 A SG CYS 531 A CYS 531 1_555 D FE3 SF4 . A SF4 733 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc6 A SG CYS 598 A CYS 598 1_555 B NI NI . A NI 734 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc7 A SG CYS 598 A CYS 598 1_555 C NI NI . A NI 735 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc8 A N GLY 599 A GLY 599 1_555 C NI NI . A NI 735 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? 
metalc ? metalc9 A SG CYS 600 A CYS 600 1_555 B NI NI . A NI 734 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? 
metalc ? metalc10 A N CYS 600 A CYS 600 1_555 C NI NI . A NI 735 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.885 ? 
metalc ? metalc11 A SG CYS 600 A CYS 600 1_555 C NI NI . A NI 735 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc12 B NI NI . A NI 734 1_555 Q O HOH . A HOH 736 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1RU3 
_atom_sites.fract_transf_matrix[1][1]    0.004992 
_atom_sites.fract_transf_matrix[1][2]    0.002882 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005765 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005903 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NI A 1 734 734 NI NI . 
C 2 NI A 1 735 735 NI NI . 
D 3 SF4 A 1 733 733 SF4 FS4 . 
E 4 GOL A 1 959 959 GOL GOL . 
F 4 GOL A 1 960 960 GOL GOL . 
G 4 GOL A 1 961 961 GOL GOL . 
H 4 GOL A 1 962 962 GOL GOL . 
I 4 GOL A 1 963 963 GOL GOL . 
J 4 GOL A 1 964 964 GOL GOL . 
K 4 GOL A 1 965 965 GOL GOL . 
L 4 GOL A 1 966 966 GOL GOL . 
M 4 GOL A 1 967 967 GOL GOL . 
N 4 GOL A 1 968 968 GOL GOL . 
O 4 GOL A 1 969 969 GOL GOL . 
P 4 GOL A 1 970 970 GOL GOL . 
Q 5 HOH A 1 736 736 HOH HOH . 
Q 5 HOH A 2 737 737 HOH HOH . 
Q 5 HOH A 3 738 738 HOH HOH . 
Q 5 HOH A 4 739 739 HOH HOH . 
Q 5 HOH A 5 740 740 HOH HOH . 
Q 5 HOH A 6 741 741 HOH HOH . 
Q 5 HOH A 7 742 742 HOH HOH . 
Q 5 HOH A 8 743 743 HOH HOH . 
Q 5 HOH A 9 744 744 HOH HOH . 
Q 5 HOH A 10 745 745 HOH HOH . 
Q 5 HOH A 11 746 746 HOH HOH . 
Q 5 HOH A 12 747 747 HOH HOH . 
Q 5 HOH A 13 748 748 HOH HOH . 
Q 5 HOH A 14 749 749 HOH HOH . 
Q 5 HOH A 15 750 750 HOH HOH . 
Q 5 HOH A 16 751 751 HOH HOH . 
Q 5 HOH A 17 752 752 HOH HOH . 
Q 5 HOH A 18 753 753 HOH HOH . 
Q 5 HOH A 19 754 754 HOH HOH . 
Q 5 HOH A 20 755 755 HOH HOH . 
Q 5 HOH A 21 756 756 HOH HOH . 
Q 5 HOH A 22 757 757 HOH HOH . 
Q 5 HOH A 23 758 758 HOH HOH . 
Q 5 HOH A 24 759 759 HOH HOH . 
Q 5 HOH A 25 760 760 HOH HOH . 
Q 5 HOH A 26 761 761 HOH HOH . 
Q 5 HOH A 27 762 762 HOH HOH . 
Q 5 HOH A 28 763 763 HOH HOH . 
Q 5 HOH A 29 764 764 HOH HOH . 
Q 5 HOH A 30 765 765 HOH HOH . 
Q 5 HOH A 31 766 766 HOH HOH . 
Q 5 HOH A 32 767 767 HOH HOH . 
Q 5 HOH A 33 768 768 HOH HOH . 
Q 5 HOH A 34 769 769 HOH HOH . 
Q 5 HOH A 35 770 770 HOH HOH . 
Q 5 HOH A 36 771 771 HOH HOH . 
Q 5 HOH A 37 772 772 HOH HOH . 
Q 5 HOH A 38 773 773 HOH HOH . 
Q 5 HOH A 39 774 774 HOH HOH . 
Q 5 HOH A 40 775 775 HOH HOH . 
Q 5 HOH A 41 776 776 HOH HOH . 
Q 5 HOH A 42 777 777 HOH HOH . 
Q 5 HOH A 43 778 778 HOH HOH . 
Q 5 HOH A 44 779 779 HOH HOH . 
Q 5 HOH A 45 780 780 HOH HOH . 
Q 5 HOH A 46 781 781 HOH HOH . 
Q 5 HOH A 47 782 782 HOH HOH . 
Q 5 HOH A 48 783 783 HOH HOH . 
Q 5 HOH A 49 784 784 HOH HOH . 
Q 5 HOH A 50 785 785 HOH HOH . 
Q 5 HOH A 51 786 786 HOH HOH . 
Q 5 HOH A 52 787 787 HOH HOH . 
Q 5 HOH A 53 788 788 HOH HOH . 
Q 5 HOH A 54 789 789 HOH HOH . 
Q 5 HOH A 55 790 790 HOH HOH . 
Q 5 HOH A 56 791 791 HOH HOH . 
Q 5 HOH A 57 792 792 HOH HOH . 
Q 5 HOH A 58 793 793 HOH HOH . 
Q 5 HOH A 59 794 794 HOH HOH . 
Q 5 HOH A 60 795 795 HOH HOH . 
Q 5 HOH A 61 796 796 HOH HOH . 
Q 5 HOH A 62 797 797 HOH HOH . 
Q 5 HOH A 63 798 798 HOH HOH . 
Q 5 HOH A 64 799 799 HOH HOH . 
Q 5 HOH A 65 800 800 HOH HOH . 
Q 5 HOH A 66 801 801 HOH HOH . 
Q 5 HOH A 67 802 802 HOH HOH . 
Q 5 HOH A 68 803 803 HOH HOH . 
Q 5 HOH A 69 804 804 HOH HOH . 
Q 5 HOH A 70 805 805 HOH HOH . 
Q 5 HOH A 71 806 806 HOH HOH . 
Q 5 HOH A 72 807 807 HOH HOH . 
Q 5 HOH A 73 808 808 HOH HOH . 
Q 5 HOH A 74 809 809 HOH HOH . 
Q 5 HOH A 75 810 810 HOH HOH . 
Q 5 HOH A 76 811 811 HOH HOH . 
Q 5 HOH A 77 812 812 HOH HOH . 
Q 5 HOH A 78 813 813 HOH HOH . 
Q 5 HOH A 79 814 814 HOH HOH . 
Q 5 HOH A 80 815 815 HOH HOH . 
Q 5 HOH A 81 816 816 HOH HOH . 
Q 5 HOH A 82 817 817 HOH HOH . 
Q 5 HOH A 83 818 818 HOH HOH . 
Q 5 HOH A 84 819 819 HOH HOH . 
Q 5 HOH A 85 820 820 HOH HOH . 
Q 5 HOH A 86 821 821 HOH HOH . 
Q 5 HOH A 87 822 822 HOH HOH . 
Q 5 HOH A 88 823 823 HOH HOH . 
Q 5 HOH A 89 824 824 HOH HOH . 
Q 5 HOH A 90 825 825 HOH HOH . 
Q 5 HOH A 91 826 826 HOH HOH . 
Q 5 HOH A 92 827 827 HOH HOH . 
Q 5 HOH A 93 828 828 HOH HOH . 
Q 5 HOH A 94 829 829 HOH HOH . 
Q 5 HOH A 95 830 830 HOH HOH . 
Q 5 HOH A 96 831 831 HOH HOH . 
Q 5 HOH A 97 832 832 HOH HOH . 
Q 5 HOH A 98 833 833 HOH HOH . 
Q 5 HOH A 99 834 834 HOH HOH . 
Q 5 HOH A 100 835 835 HOH HOH . 
Q 5 HOH A 101 836 836 HOH HOH . 
Q 5 HOH A 102 837 837 HOH HOH . 
Q 5 HOH A 103 838 838 HOH HOH . 
Q 5 HOH A 104 839 839 HOH HOH . 
Q 5 HOH A 105 840 840 HOH HOH . 
Q 5 HOH A 106 841 841 HOH HOH . 
Q 5 HOH A 107 842 842 HOH HOH . 
Q 5 HOH A 108 843 843 HOH HOH . 
Q 5 HOH A 109 844 844 HOH HOH . 
Q 5 HOH A 110 845 845 HOH HOH . 
Q 5 HOH A 111 846 846 HOH HOH . 
Q 5 HOH A 112 847 847 HOH HOH . 
Q 5 HOH A 113 848 848 HOH HOH . 
Q 5 HOH A 114 849 849 HOH HOH . 
Q 5 HOH A 115 850 850 HOH HOH . 
Q 5 HOH A 116 851 851 HOH HOH . 
Q 5 HOH A 117 852 852 HOH HOH . 
Q 5 HOH A 118 853 853 HOH HOH . 
Q 5 HOH A 119 854 854 HOH HOH . 
Q 5 HOH A 120 855 855 HOH HOH . 
Q 5 HOH A 121 856 856 HOH HOH . 
Q 5 HOH A 122 857 857 HOH HOH . 
Q 5 HOH A 123 858 858 HOH HOH . 
Q 5 HOH A 124 859 859 HOH HOH . 
Q 5 HOH A 125 860 860 HOH HOH . 
Q 5 HOH A 126 861 861 HOH HOH . 
Q 5 HOH A 127 862 862 HOH HOH . 
Q 5 HOH A 128 863 863 HOH HOH . 
Q 5 HOH A 129 864 864 HOH HOH . 
Q 5 HOH A 130 865 865 HOH HOH . 
Q 5 HOH A 131 866 866 HOH HOH . 
Q 5 HOH A 132 867 867 HOH HOH . 
Q 5 HOH A 133 868 868 HOH HOH . 
Q 5 HOH A 134 869 869 HOH HOH . 
Q 5 HOH A 135 870 870 HOH HOH . 
Q 5 HOH A 136 871 871 HOH HOH . 
Q 5 HOH A 137 872 872 HOH HOH . 
Q 5 HOH A 138 873 873 HOH HOH . 
Q 5 HOH A 139 874 874 HOH HOH . 
Q 5 HOH A 140 875 875 HOH HOH . 
Q 5 HOH A 141 876 876 HOH HOH . 
Q 5 HOH A 142 877 877 HOH HOH . 
Q 5 HOH A 143 878 878 HOH HOH . 
Q 5 HOH A 144 879 879 HOH HOH . 
Q 5 HOH A 145 880 880 HOH HOH . 
Q 5 HOH A 146 881 881 HOH HOH . 
Q 5 HOH A 147 882 882 HOH HOH . 
Q 5 HOH A 148 883 883 HOH HOH . 
Q 5 HOH A 149 884 884 HOH HOH . 
Q 5 HOH A 150 885 885 HOH HOH . 
Q 5 HOH A 151 886 886 HOH HOH . 
Q 5 HOH A 152 887 887 HOH HOH . 
Q 5 HOH A 153 888 888 HOH HOH . 
Q 5 HOH A 154 889 889 HOH HOH . 
Q 5 HOH A 155 890 890 HOH HOH . 
Q 5 HOH A 156 891 891 HOH HOH . 
Q 5 HOH A 157 892 892 HOH HOH . 
Q 5 HOH A 158 893 893 HOH HOH . 
Q 5 HOH A 159 894 894 HOH HOH . 
Q 5 HOH A 160 895 895 HOH HOH . 
Q 5 HOH A 161 896 896 HOH HOH . 
Q 5 HOH A 162 897 897 HOH HOH . 
Q 5 HOH A 163 898 898 HOH HOH . 
Q 5 HOH A 164 899 899 HOH HOH . 
Q 5 HOH A 165 900 900 HOH HOH . 
Q 5 HOH A 166 901 901 HOH HOH . 
Q 5 HOH A 167 902 902 HOH HOH . 
Q 5 HOH A 168 903 903 HOH HOH . 
Q 5 HOH A 169 904 904 HOH HOH . 
Q 5 HOH A 170 905 905 HOH HOH . 
Q 5 HOH A 171 906 906 HOH HOH . 
Q 5 HOH A 172 907 907 HOH HOH . 
Q 5 HOH A 173 908 908 HOH HOH . 
Q 5 HOH A 174 909 909 HOH HOH . 
Q 5 HOH A 175 910 910 HOH HOH . 
Q 5 HOH A 176 911 911 HOH HOH . 
Q 5 HOH A 177 912 912 HOH HOH . 
Q 5 HOH A 178 913 913 HOH HOH . 
Q 5 HOH A 179 914 914 HOH HOH . 
Q 5 HOH A 180 915 915 HOH HOH . 
Q 5 HOH A 181 916 916 HOH HOH . 
Q 5 HOH A 182 917 917 HOH HOH . 
Q 5 HOH A 183 918 918 HOH HOH . 
Q 5 HOH A 184 919 919 HOH HOH . 
Q 5 HOH A 185 920 920 HOH HOH . 
Q 5 HOH A 186 921 921 HOH HOH . 
Q 5 HOH A 187 922 922 HOH HOH . 
Q 5 HOH A 188 923 923 HOH HOH . 
Q 5 HOH A 189 924 924 HOH HOH . 
Q 5 HOH A 190 925 925 HOH HOH . 
Q 5 HOH A 191 926 926 HOH HOH . 
Q 5 HOH A 192 927 927 HOH HOH . 
Q 5 HOH A 193 928 928 HOH HOH . 
Q 5 HOH A 194 929 929 HOH HOH . 
Q 5 HOH A 195 930 930 HOH HOH . 
Q 5 HOH A 196 931 931 HOH HOH . 
Q 5 HOH A 197 932 932 HOH HOH . 
Q 5 HOH A 198 933 933 HOH HOH . 
Q 5 HOH A 199 934 934 HOH HOH . 
Q 5 HOH A 200 935 935 HOH HOH . 
Q 5 HOH A 201 936 936 HOH HOH . 
Q 5 HOH A 202 937 937 HOH HOH . 
Q 5 HOH A 203 938 938 HOH HOH . 
Q 5 HOH A 204 939 939 HOH HOH . 
Q 5 HOH A 205 940 940 HOH HOH . 
Q 5 HOH A 206 941 941 HOH HOH . 
Q 5 HOH A 207 942 942 HOH HOH . 
Q 5 HOH A 208 943 943 HOH HOH . 
Q 5 HOH A 209 944 944 HOH HOH . 
Q 5 HOH A 210 945 945 HOH HOH . 
Q 5 HOH A 211 946 946 HOH HOH . 
Q 5 HOH A 212 947 947 HOH HOH . 
Q 5 HOH A 213 948 948 HOH HOH . 
Q 5 HOH A 214 949 949 HOH HOH . 
Q 5 HOH A 215 950 950 HOH HOH . 
Q 5 HOH A 216 951 951 HOH HOH . 
Q 5 HOH A 217 952 952 HOH HOH . 
Q 5 HOH A 218 953 953 HOH HOH . 
Q 5 HOH A 219 954 954 HOH HOH . 
Q 5 HOH A 220 955 955 HOH HOH . 
Q 5 HOH A 221 956 956 HOH HOH . 
Q 5 HOH A 222 957 957 HOH HOH . 
Q 5 HOH A 223 958 958 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               5.727 
_atom_site.Cartn_y               35.152 
_atom_site.Cartn_z               99.838 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        53.53 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           734 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           341 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#