data_1RU3 # _model_server_result.job_id ZTWrWmyU9_gGE7mSSd7NPg _model_server_result.datetime_utc '2024-12-27 00:22:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ru3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":734}' # _entry.id 1RU3 # _exptl.entry_id 1RU3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1RU3 _cell.length_a 200.31 _cell.length_b 200.31 _cell.length_c 169.41 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RU3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 598 A CYS 598 1_555 A SG CYS 600 A CYS 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? metalc ? metalc1 A SG CYS 509 A CYS 509 1_555 D FE1 SF4 . A SF4 733 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc2 A SG CYS 512 A CYS 512 1_555 D FE4 SF4 . A SF4 733 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc3 A SG CYS 512 A CYS 512 1_555 B NI NI . A NI 734 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc4 A SG CYS 521 A CYS 521 1_555 D FE2 SF4 . A SF4 733 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc5 A SG CYS 531 A CYS 531 1_555 D FE3 SF4 . A SF4 733 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc6 A SG CYS 598 A CYS 598 1_555 B NI NI . A NI 734 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc7 A SG CYS 598 A CYS 598 1_555 C NI NI . A NI 735 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc8 A N GLY 599 A GLY 599 1_555 C NI NI . A NI 735 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? metalc ? metalc9 A SG CYS 600 A CYS 600 1_555 B NI NI . A NI 734 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc10 A N CYS 600 A CYS 600 1_555 C NI NI . A NI 735 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.885 ? metalc ? metalc11 A SG CYS 600 A CYS 600 1_555 C NI NI . A NI 735 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc12 B NI NI . A NI 734 1_555 Q O HOH . A HOH 736 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1RU3 _atom_sites.fract_transf_matrix[1][1] 0.004992 _atom_sites.fract_transf_matrix[1][2] 0.002882 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005765 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005903 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI A 1 734 734 NI NI . C 2 NI A 1 735 735 NI NI . D 3 SF4 A 1 733 733 SF4 FS4 . E 4 GOL A 1 959 959 GOL GOL . F 4 GOL A 1 960 960 GOL GOL . G 4 GOL A 1 961 961 GOL GOL . H 4 GOL A 1 962 962 GOL GOL . I 4 GOL A 1 963 963 GOL GOL . J 4 GOL A 1 964 964 GOL GOL . K 4 GOL A 1 965 965 GOL GOL . L 4 GOL A 1 966 966 GOL GOL . M 4 GOL A 1 967 967 GOL GOL . N 4 GOL A 1 968 968 GOL GOL . O 4 GOL A 1 969 969 GOL GOL . P 4 GOL A 1 970 970 GOL GOL . Q 5 HOH A 1 736 736 HOH HOH . Q 5 HOH A 2 737 737 HOH HOH . Q 5 HOH A 3 738 738 HOH HOH . Q 5 HOH A 4 739 739 HOH HOH . Q 5 HOH A 5 740 740 HOH HOH . Q 5 HOH A 6 741 741 HOH HOH . Q 5 HOH A 7 742 742 HOH HOH . Q 5 HOH A 8 743 743 HOH HOH . Q 5 HOH A 9 744 744 HOH HOH . Q 5 HOH A 10 745 745 HOH HOH . Q 5 HOH A 11 746 746 HOH HOH . Q 5 HOH A 12 747 747 HOH HOH . Q 5 HOH A 13 748 748 HOH HOH . Q 5 HOH A 14 749 749 HOH HOH . Q 5 HOH A 15 750 750 HOH HOH . Q 5 HOH A 16 751 751 HOH HOH . Q 5 HOH A 17 752 752 HOH HOH . Q 5 HOH A 18 753 753 HOH HOH . Q 5 HOH A 19 754 754 HOH HOH . Q 5 HOH A 20 755 755 HOH HOH . Q 5 HOH A 21 756 756 HOH HOH . Q 5 HOH A 22 757 757 HOH HOH . Q 5 HOH A 23 758 758 HOH HOH . Q 5 HOH A 24 759 759 HOH HOH . Q 5 HOH A 25 760 760 HOH HOH . Q 5 HOH A 26 761 761 HOH HOH . Q 5 HOH A 27 762 762 HOH HOH . Q 5 HOH A 28 763 763 HOH HOH . Q 5 HOH A 29 764 764 HOH HOH . Q 5 HOH A 30 765 765 HOH HOH . Q 5 HOH A 31 766 766 HOH HOH . Q 5 HOH A 32 767 767 HOH HOH . Q 5 HOH A 33 768 768 HOH HOH . Q 5 HOH A 34 769 769 HOH HOH . Q 5 HOH A 35 770 770 HOH HOH . Q 5 HOH A 36 771 771 HOH HOH . Q 5 HOH A 37 772 772 HOH HOH . Q 5 HOH A 38 773 773 HOH HOH . Q 5 HOH A 39 774 774 HOH HOH . Q 5 HOH A 40 775 775 HOH HOH . Q 5 HOH A 41 776 776 HOH HOH . Q 5 HOH A 42 777 777 HOH HOH . Q 5 HOH A 43 778 778 HOH HOH . Q 5 HOH A 44 779 779 HOH HOH . Q 5 HOH A 45 780 780 HOH HOH . Q 5 HOH A 46 781 781 HOH HOH . Q 5 HOH A 47 782 782 HOH HOH . Q 5 HOH A 48 783 783 HOH HOH . Q 5 HOH A 49 784 784 HOH HOH . Q 5 HOH A 50 785 785 HOH HOH . Q 5 HOH A 51 786 786 HOH HOH . Q 5 HOH A 52 787 787 HOH HOH . Q 5 HOH A 53 788 788 HOH HOH . Q 5 HOH A 54 789 789 HOH HOH . Q 5 HOH A 55 790 790 HOH HOH . Q 5 HOH A 56 791 791 HOH HOH . Q 5 HOH A 57 792 792 HOH HOH . Q 5 HOH A 58 793 793 HOH HOH . Q 5 HOH A 59 794 794 HOH HOH . Q 5 HOH A 60 795 795 HOH HOH . Q 5 HOH A 61 796 796 HOH HOH . Q 5 HOH A 62 797 797 HOH HOH . Q 5 HOH A 63 798 798 HOH HOH . Q 5 HOH A 64 799 799 HOH HOH . Q 5 HOH A 65 800 800 HOH HOH . Q 5 HOH A 66 801 801 HOH HOH . Q 5 HOH A 67 802 802 HOH HOH . Q 5 HOH A 68 803 803 HOH HOH . Q 5 HOH A 69 804 804 HOH HOH . Q 5 HOH A 70 805 805 HOH HOH . Q 5 HOH A 71 806 806 HOH HOH . Q 5 HOH A 72 807 807 HOH HOH . Q 5 HOH A 73 808 808 HOH HOH . Q 5 HOH A 74 809 809 HOH HOH . Q 5 HOH A 75 810 810 HOH HOH . Q 5 HOH A 76 811 811 HOH HOH . Q 5 HOH A 77 812 812 HOH HOH . Q 5 HOH A 78 813 813 HOH HOH . Q 5 HOH A 79 814 814 HOH HOH . Q 5 HOH A 80 815 815 HOH HOH . Q 5 HOH A 81 816 816 HOH HOH . Q 5 HOH A 82 817 817 HOH HOH . Q 5 HOH A 83 818 818 HOH HOH . Q 5 HOH A 84 819 819 HOH HOH . Q 5 HOH A 85 820 820 HOH HOH . Q 5 HOH A 86 821 821 HOH HOH . Q 5 HOH A 87 822 822 HOH HOH . Q 5 HOH A 88 823 823 HOH HOH . Q 5 HOH A 89 824 824 HOH HOH . Q 5 HOH A 90 825 825 HOH HOH . Q 5 HOH A 91 826 826 HOH HOH . Q 5 HOH A 92 827 827 HOH HOH . Q 5 HOH A 93 828 828 HOH HOH . Q 5 HOH A 94 829 829 HOH HOH . Q 5 HOH A 95 830 830 HOH HOH . Q 5 HOH A 96 831 831 HOH HOH . Q 5 HOH A 97 832 832 HOH HOH . Q 5 HOH A 98 833 833 HOH HOH . Q 5 HOH A 99 834 834 HOH HOH . Q 5 HOH A 100 835 835 HOH HOH . Q 5 HOH A 101 836 836 HOH HOH . Q 5 HOH A 102 837 837 HOH HOH . Q 5 HOH A 103 838 838 HOH HOH . Q 5 HOH A 104 839 839 HOH HOH . Q 5 HOH A 105 840 840 HOH HOH . Q 5 HOH A 106 841 841 HOH HOH . Q 5 HOH A 107 842 842 HOH HOH . Q 5 HOH A 108 843 843 HOH HOH . Q 5 HOH A 109 844 844 HOH HOH . Q 5 HOH A 110 845 845 HOH HOH . Q 5 HOH A 111 846 846 HOH HOH . Q 5 HOH A 112 847 847 HOH HOH . Q 5 HOH A 113 848 848 HOH HOH . Q 5 HOH A 114 849 849 HOH HOH . Q 5 HOH A 115 850 850 HOH HOH . Q 5 HOH A 116 851 851 HOH HOH . Q 5 HOH A 117 852 852 HOH HOH . Q 5 HOH A 118 853 853 HOH HOH . Q 5 HOH A 119 854 854 HOH HOH . Q 5 HOH A 120 855 855 HOH HOH . Q 5 HOH A 121 856 856 HOH HOH . Q 5 HOH A 122 857 857 HOH HOH . Q 5 HOH A 123 858 858 HOH HOH . Q 5 HOH A 124 859 859 HOH HOH . Q 5 HOH A 125 860 860 HOH HOH . Q 5 HOH A 126 861 861 HOH HOH . Q 5 HOH A 127 862 862 HOH HOH . Q 5 HOH A 128 863 863 HOH HOH . Q 5 HOH A 129 864 864 HOH HOH . Q 5 HOH A 130 865 865 HOH HOH . Q 5 HOH A 131 866 866 HOH HOH . Q 5 HOH A 132 867 867 HOH HOH . Q 5 HOH A 133 868 868 HOH HOH . Q 5 HOH A 134 869 869 HOH HOH . Q 5 HOH A 135 870 870 HOH HOH . Q 5 HOH A 136 871 871 HOH HOH . Q 5 HOH A 137 872 872 HOH HOH . Q 5 HOH A 138 873 873 HOH HOH . Q 5 HOH A 139 874 874 HOH HOH . Q 5 HOH A 140 875 875 HOH HOH . Q 5 HOH A 141 876 876 HOH HOH . Q 5 HOH A 142 877 877 HOH HOH . Q 5 HOH A 143 878 878 HOH HOH . Q 5 HOH A 144 879 879 HOH HOH . Q 5 HOH A 145 880 880 HOH HOH . Q 5 HOH A 146 881 881 HOH HOH . Q 5 HOH A 147 882 882 HOH HOH . Q 5 HOH A 148 883 883 HOH HOH . Q 5 HOH A 149 884 884 HOH HOH . Q 5 HOH A 150 885 885 HOH HOH . Q 5 HOH A 151 886 886 HOH HOH . Q 5 HOH A 152 887 887 HOH HOH . Q 5 HOH A 153 888 888 HOH HOH . Q 5 HOH A 154 889 889 HOH HOH . Q 5 HOH A 155 890 890 HOH HOH . Q 5 HOH A 156 891 891 HOH HOH . Q 5 HOH A 157 892 892 HOH HOH . Q 5 HOH A 158 893 893 HOH HOH . Q 5 HOH A 159 894 894 HOH HOH . Q 5 HOH A 160 895 895 HOH HOH . Q 5 HOH A 161 896 896 HOH HOH . Q 5 HOH A 162 897 897 HOH HOH . Q 5 HOH A 163 898 898 HOH HOH . Q 5 HOH A 164 899 899 HOH HOH . Q 5 HOH A 165 900 900 HOH HOH . Q 5 HOH A 166 901 901 HOH HOH . Q 5 HOH A 167 902 902 HOH HOH . Q 5 HOH A 168 903 903 HOH HOH . Q 5 HOH A 169 904 904 HOH HOH . Q 5 HOH A 170 905 905 HOH HOH . Q 5 HOH A 171 906 906 HOH HOH . Q 5 HOH A 172 907 907 HOH HOH . Q 5 HOH A 173 908 908 HOH HOH . Q 5 HOH A 174 909 909 HOH HOH . Q 5 HOH A 175 910 910 HOH HOH . Q 5 HOH A 176 911 911 HOH HOH . Q 5 HOH A 177 912 912 HOH HOH . Q 5 HOH A 178 913 913 HOH HOH . Q 5 HOH A 179 914 914 HOH HOH . Q 5 HOH A 180 915 915 HOH HOH . Q 5 HOH A 181 916 916 HOH HOH . Q 5 HOH A 182 917 917 HOH HOH . Q 5 HOH A 183 918 918 HOH HOH . Q 5 HOH A 184 919 919 HOH HOH . Q 5 HOH A 185 920 920 HOH HOH . Q 5 HOH A 186 921 921 HOH HOH . Q 5 HOH A 187 922 922 HOH HOH . Q 5 HOH A 188 923 923 HOH HOH . Q 5 HOH A 189 924 924 HOH HOH . Q 5 HOH A 190 925 925 HOH HOH . Q 5 HOH A 191 926 926 HOH HOH . Q 5 HOH A 192 927 927 HOH HOH . Q 5 HOH A 193 928 928 HOH HOH . Q 5 HOH A 194 929 929 HOH HOH . Q 5 HOH A 195 930 930 HOH HOH . Q 5 HOH A 196 931 931 HOH HOH . Q 5 HOH A 197 932 932 HOH HOH . Q 5 HOH A 198 933 933 HOH HOH . Q 5 HOH A 199 934 934 HOH HOH . Q 5 HOH A 200 935 935 HOH HOH . Q 5 HOH A 201 936 936 HOH HOH . Q 5 HOH A 202 937 937 HOH HOH . Q 5 HOH A 203 938 938 HOH HOH . Q 5 HOH A 204 939 939 HOH HOH . Q 5 HOH A 205 940 940 HOH HOH . Q 5 HOH A 206 941 941 HOH HOH . Q 5 HOH A 207 942 942 HOH HOH . Q 5 HOH A 208 943 943 HOH HOH . Q 5 HOH A 209 944 944 HOH HOH . Q 5 HOH A 210 945 945 HOH HOH . Q 5 HOH A 211 946 946 HOH HOH . Q 5 HOH A 212 947 947 HOH HOH . Q 5 HOH A 213 948 948 HOH HOH . Q 5 HOH A 214 949 949 HOH HOH . Q 5 HOH A 215 950 950 HOH HOH . Q 5 HOH A 216 951 951 HOH HOH . Q 5 HOH A 217 952 952 HOH HOH . Q 5 HOH A 218 953 953 HOH HOH . Q 5 HOH A 219 954 954 HOH HOH . Q 5 HOH A 220 955 955 HOH HOH . Q 5 HOH A 221 956 956 HOH HOH . Q 5 HOH A 222 957 957 HOH HOH . Q 5 HOH A 223 958 958 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 5.727 _atom_site.Cartn_y 35.152 _atom_site.Cartn_z 99.838 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 53.53 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 734 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #