data_1RU9 # _model_server_result.job_id p9khq1Hb6ioSAqaQXGB_wA _model_server_result.datetime_utc '2024-11-14 05:58:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ru9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":625}' # _entry.id 1RU9 # _exptl.entry_id 1RU9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RU9 _cell.length_a 64.073 _cell.length_b 64.073 _cell.length_c 266.041 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RU9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 93 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 139 L CYS 134 1_555 A SG CYS 199 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 219 L CYS 214 1_555 B SG CYS 134 H CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 B SG CYS 146 H CYS 142 1_555 B SG CYS 201 H CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A C SER 167 L SER 162 1_555 A N 4HT 168 L 4HT 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale2 A C 4HT 168 L 4HT 163 1_555 A N THR 169 L THR 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale3 B C GLN 5 H GLN 5 1_555 B N GHG 6 H GHG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C GHG 6 H GHG 6 1_555 B N SER 7 H SER 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 199 n n C1 C2 GOL sing 200 n n C1 H11 GOL sing 201 n n C1 H12 GOL sing 202 n n O1 HO1 GOL sing 203 n n C2 O2 GOL sing 204 n n C2 C3 GOL sing 205 n n C2 H2 GOL sing 206 n n O2 HO2 GOL sing 207 n n C3 O3 GOL sing 208 n n C3 H31 GOL sing 209 n n C3 H32 GOL sing 210 n n O3 HO3 GOL sing 211 n n # _atom_sites.entry_id 1RU9 _atom_sites.fract_transf_matrix[1][1] 0.015607 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015607 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003759 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL L 1 622 622 GOL GOL . D 4 ACT H 1 611 611 ACT ACT . E 5 BEZ H 1 601 601 BEZ BEZ . F 3 GOL H 1 621 621 GOL GOL . G 3 GOL H 1 623 623 GOL GOL . H 3 GOL H 1 624 624 GOL GOL . I 3 GOL H 1 625 625 GOL GOL . J 6 HOH L 1 623 3 HOH HOH . J 6 HOH L 2 624 5 HOH HOH . J 6 HOH L 3 625 7 HOH HOH . J 6 HOH L 4 626 13 HOH HOH . J 6 HOH L 5 627 18 HOH HOH . J 6 HOH L 6 628 22 HOH HOH . J 6 HOH L 7 629 24 HOH HOH . J 6 HOH L 8 630 25 HOH HOH . J 6 HOH L 9 631 26 HOH HOH . J 6 HOH L 10 632 28 HOH HOH . J 6 HOH L 11 633 35 HOH HOH . J 6 HOH L 12 634 36 HOH HOH . J 6 HOH L 13 635 42 HOH HOH . J 6 HOH L 14 636 45 HOH HOH . J 6 HOH L 15 637 47 HOH HOH . J 6 HOH L 16 638 51 HOH HOH . J 6 HOH L 17 639 52 HOH HOH . J 6 HOH L 18 640 56 HOH HOH . J 6 HOH L 19 641 57 HOH HOH . J 6 HOH L 20 642 58 HOH HOH . J 6 HOH L 21 643 59 HOH HOH . J 6 HOH L 22 644 63 HOH HOH . J 6 HOH L 23 645 64 HOH HOH . J 6 HOH L 24 646 65 HOH HOH . J 6 HOH L 25 647 67 HOH HOH . J 6 HOH L 26 648 68 HOH HOH . J 6 HOH L 27 649 71 HOH HOH . J 6 HOH L 28 650 72 HOH HOH . J 6 HOH L 29 651 75 HOH HOH . J 6 HOH L 30 652 82 HOH HOH . J 6 HOH L 31 653 83 HOH HOH . J 6 HOH L 32 654 85 HOH HOH . J 6 HOH L 33 655 87 HOH HOH . J 6 HOH L 34 656 92 HOH HOH . J 6 HOH L 35 657 97 HOH HOH . J 6 HOH L 36 658 101 HOH HOH . J 6 HOH L 37 659 104 HOH HOH . J 6 HOH L 38 660 105 HOH HOH . J 6 HOH L 39 661 106 HOH HOH . J 6 HOH L 40 662 108 HOH HOH . J 6 HOH L 41 663 109 HOH HOH . J 6 HOH L 42 664 110 HOH HOH . J 6 HOH L 43 665 111 HOH HOH . J 6 HOH L 44 666 112 HOH HOH . J 6 HOH L 45 667 113 HOH HOH . J 6 HOH L 46 668 114 HOH HOH . J 6 HOH L 47 669 115 HOH HOH . J 6 HOH L 48 670 120 HOH HOH . J 6 HOH L 49 671 127 HOH HOH . J 6 HOH L 50 672 129 HOH HOH . J 6 HOH L 51 673 130 HOH HOH . J 6 HOH L 52 674 133 HOH HOH . J 6 HOH L 53 675 136 HOH HOH . J 6 HOH L 54 676 139 HOH HOH . J 6 HOH L 55 677 141 HOH HOH . J 6 HOH L 56 678 143 HOH HOH . J 6 HOH L 57 679 145 HOH HOH . J 6 HOH L 58 680 147 HOH HOH . J 6 HOH L 59 681 148 HOH HOH . J 6 HOH L 60 682 150 HOH HOH . J 6 HOH L 61 683 152 HOH HOH . J 6 HOH L 62 684 154 HOH HOH . J 6 HOH L 63 685 156 HOH HOH . J 6 HOH L 64 686 165 HOH HOH . J 6 HOH L 65 687 166 HOH HOH . J 6 HOH L 66 688 168 HOH HOH . J 6 HOH L 67 689 169 HOH HOH . J 6 HOH L 68 690 175 HOH HOH . J 6 HOH L 69 691 176 HOH HOH . J 6 HOH L 70 692 178 HOH HOH . J 6 HOH L 71 693 180 HOH HOH . J 6 HOH L 72 694 182 HOH HOH . J 6 HOH L 73 695 183 HOH HOH . J 6 HOH L 74 696 185 HOH HOH . J 6 HOH L 75 697 186 HOH HOH . J 6 HOH L 76 698 187 HOH HOH . J 6 HOH L 77 699 191 HOH HOH . J 6 HOH L 78 700 193 HOH HOH . J 6 HOH L 79 701 194 HOH HOH . J 6 HOH L 80 702 196 HOH HOH . J 6 HOH L 81 703 200 HOH HOH . J 6 HOH L 82 704 202 HOH HOH . J 6 HOH L 83 705 206 HOH HOH . J 6 HOH L 84 706 208 HOH HOH . J 6 HOH L 85 707 210 HOH HOH . J 6 HOH L 86 708 211 HOH HOH . J 6 HOH L 87 709 216 HOH HOH . J 6 HOH L 88 710 217 HOH HOH . J 6 HOH L 89 711 220 HOH HOH . J 6 HOH L 90 712 224 HOH HOH . J 6 HOH L 91 713 225 HOH HOH . J 6 HOH L 92 714 226 HOH HOH . J 6 HOH L 93 715 227 HOH HOH . J 6 HOH L 94 716 235 HOH HOH . J 6 HOH L 95 717 238 HOH HOH . J 6 HOH L 96 718 242 HOH HOH . K 6 HOH H 1 626 1 HOH HOH . K 6 HOH H 2 627 2 HOH HOH . K 6 HOH H 3 628 4 HOH HOH . K 6 HOH H 4 629 6 HOH HOH . K 6 HOH H 5 630 8 HOH HOH . K 6 HOH H 6 631 9 HOH HOH . K 6 HOH H 7 632 10 HOH HOH . K 6 HOH H 8 633 11 HOH HOH . K 6 HOH H 9 634 12 HOH HOH . K 6 HOH H 10 635 14 HOH HOH . K 6 HOH H 11 636 15 HOH HOH . K 6 HOH H 12 637 16 HOH HOH . K 6 HOH H 13 638 17 HOH HOH . K 6 HOH H 14 639 19 HOH HOH . K 6 HOH H 15 640 20 HOH HOH . K 6 HOH H 16 641 21 HOH HOH . K 6 HOH H 17 642 23 HOH HOH . K 6 HOH H 18 643 27 HOH HOH . K 6 HOH H 19 644 29 HOH HOH . K 6 HOH H 20 645 30 HOH HOH . K 6 HOH H 21 646 31 HOH HOH . K 6 HOH H 22 647 32 HOH HOH . K 6 HOH H 23 648 33 HOH HOH . K 6 HOH H 24 649 34 HOH HOH . K 6 HOH H 25 650 37 HOH HOH . K 6 HOH H 26 651 38 HOH HOH . K 6 HOH H 27 652 39 HOH HOH . K 6 HOH H 28 653 40 HOH HOH . K 6 HOH H 29 654 41 HOH HOH . K 6 HOH H 30 655 43 HOH HOH . K 6 HOH H 31 656 44 HOH HOH . K 6 HOH H 32 657 46 HOH HOH . K 6 HOH H 33 658 48 HOH HOH . K 6 HOH H 34 659 49 HOH HOH . K 6 HOH H 35 660 50 HOH HOH . K 6 HOH H 36 661 53 HOH HOH . K 6 HOH H 37 662 54 HOH HOH . K 6 HOH H 38 663 55 HOH HOH . K 6 HOH H 39 664 60 HOH HOH . K 6 HOH H 40 665 61 HOH HOH . K 6 HOH H 41 666 62 HOH HOH . K 6 HOH H 42 667 66 HOH HOH . K 6 HOH H 43 668 69 HOH HOH . K 6 HOH H 44 669 70 HOH HOH . K 6 HOH H 45 670 73 HOH HOH . K 6 HOH H 46 671 74 HOH HOH . K 6 HOH H 47 672 76 HOH HOH . K 6 HOH H 48 673 77 HOH HOH . K 6 HOH H 49 674 78 HOH HOH . K 6 HOH H 50 675 79 HOH HOH . K 6 HOH H 51 676 80 HOH HOH . K 6 HOH H 52 677 81 HOH HOH . K 6 HOH H 53 678 84 HOH HOH . K 6 HOH H 54 679 86 HOH HOH . K 6 HOH H 55 680 88 HOH HOH . K 6 HOH H 56 681 89 HOH HOH . K 6 HOH H 57 682 90 HOH HOH . K 6 HOH H 58 683 91 HOH HOH . K 6 HOH H 59 684 93 HOH HOH . K 6 HOH H 60 685 94 HOH HOH . K 6 HOH H 61 686 95 HOH HOH . K 6 HOH H 62 687 96 HOH HOH . K 6 HOH H 63 688 98 HOH HOH . K 6 HOH H 64 689 99 HOH HOH . K 6 HOH H 65 690 100 HOH HOH . K 6 HOH H 66 691 102 HOH HOH . K 6 HOH H 67 692 103 HOH HOH . K 6 HOH H 68 693 107 HOH HOH . K 6 HOH H 69 694 116 HOH HOH . K 6 HOH H 70 695 117 HOH HOH . K 6 HOH H 71 696 118 HOH HOH . K 6 HOH H 72 697 119 HOH HOH . K 6 HOH H 73 698 121 HOH HOH . K 6 HOH H 74 699 122 HOH HOH . K 6 HOH H 75 700 123 HOH HOH . K 6 HOH H 76 701 124 HOH HOH . K 6 HOH H 77 702 125 HOH HOH . K 6 HOH H 78 703 126 HOH HOH . K 6 HOH H 79 704 128 HOH HOH . K 6 HOH H 80 705 131 HOH HOH . K 6 HOH H 81 706 132 HOH HOH . K 6 HOH H 82 707 134 HOH HOH . K 6 HOH H 83 708 135 HOH HOH . K 6 HOH H 84 709 137 HOH HOH . K 6 HOH H 85 710 138 HOH HOH . K 6 HOH H 86 711 140 HOH HOH . K 6 HOH H 87 712 142 HOH HOH . K 6 HOH H 88 713 144 HOH HOH . K 6 HOH H 89 714 146 HOH HOH . K 6 HOH H 90 715 149 HOH HOH . K 6 HOH H 91 716 151 HOH HOH . K 6 HOH H 92 717 153 HOH HOH . K 6 HOH H 93 718 155 HOH HOH . K 6 HOH H 94 719 157 HOH HOH . K 6 HOH H 95 720 158 HOH HOH . K 6 HOH H 96 721 159 HOH HOH . K 6 HOH H 97 722 160 HOH HOH . K 6 HOH H 98 723 161 HOH HOH . K 6 HOH H 99 724 162 HOH HOH . K 6 HOH H 100 725 163 HOH HOH . K 6 HOH H 101 726 164 HOH HOH . K 6 HOH H 102 727 167 HOH HOH . K 6 HOH H 103 728 170 HOH HOH . K 6 HOH H 104 729 171 HOH HOH . K 6 HOH H 105 730 172 HOH HOH . K 6 HOH H 106 731 173 HOH HOH . K 6 HOH H 107 732 174 HOH HOH . K 6 HOH H 108 733 177 HOH HOH . K 6 HOH H 109 734 179 HOH HOH . K 6 HOH H 110 735 181 HOH HOH . K 6 HOH H 111 736 184 HOH HOH . K 6 HOH H 112 737 188 HOH HOH . K 6 HOH H 113 738 189 HOH HOH . K 6 HOH H 114 739 190 HOH HOH . K 6 HOH H 115 740 192 HOH HOH . K 6 HOH H 116 741 195 HOH HOH . K 6 HOH H 117 742 197 HOH HOH . K 6 HOH H 118 743 198 HOH HOH . K 6 HOH H 119 744 199 HOH HOH . K 6 HOH H 120 745 201 HOH HOH . K 6 HOH H 121 746 203 HOH HOH . K 6 HOH H 122 747 204 HOH HOH . K 6 HOH H 123 748 205 HOH HOH . K 6 HOH H 124 749 207 HOH HOH . K 6 HOH H 125 750 209 HOH HOH . K 6 HOH H 126 751 212 HOH HOH . K 6 HOH H 127 752 213 HOH HOH . K 6 HOH H 128 753 214 HOH HOH . K 6 HOH H 129 754 215 HOH HOH . K 6 HOH H 130 755 218 HOH HOH . K 6 HOH H 131 756 219 HOH HOH . K 6 HOH H 132 757 221 HOH HOH . K 6 HOH H 133 758 222 HOH HOH . K 6 HOH H 134 759 223 HOH HOH . K 6 HOH H 135 760 228 HOH HOH . K 6 HOH H 136 761 229 HOH HOH . K 6 HOH H 137 762 230 HOH HOH . K 6 HOH H 138 763 231 HOH HOH . K 6 HOH H 139 764 232 HOH HOH . K 6 HOH H 140 765 233 HOH HOH . K 6 HOH H 141 766 234 HOH HOH . K 6 HOH H 142 767 236 HOH HOH . K 6 HOH H 143 768 237 HOH HOH . K 6 HOH H 144 769 239 HOH HOH . K 6 HOH H 145 770 240 HOH HOH . K 6 HOH H 146 771 241 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 3 57.295 49.949 -6.987 1 48.76 ? C1 GOL 625 H 1 HETATM 2 O O1 GOL . . . I 3 58.658 50.112 -6.696 1 50.92 ? O1 GOL 625 H 1 HETATM 3 C C2 GOL . . . I 3 56.416 50.544 -5.888 1 48.28 ? C2 GOL 625 H 1 HETATM 4 O O2 GOL . . . I 3 55.083 50.323 -6.26 1 46.47 ? O2 GOL 625 H 1 HETATM 5 C C3 GOL . . . I 3 56.617 49.919 -4.498 1 47.92 ? C3 GOL 625 H 1 HETATM 6 O O3 GOL . . . I 3 55.756 50.53 -3.533 1 48.52 ? O3 GOL 625 H 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 6 #