data_1RUV
#
_model_server_result.job_id            qyW9xs5SVRDN71FHM42ZWw 
_model_server_result.datetime_utc      '2024-10-11 15:24:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ruv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":125}' 
#
_entry.id    1RUV 
#
_exptl.entry_id    1RUV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              343.141 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "URIDINE-2',3'-VANADATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.1 
_cell.angle_gamma         90 
_cell.entry_id            1RUV 
_cell.length_a            29.8 
_cell.length_b            38.2 
_cell.length_c            53.2 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1RUV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 84 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf2 A SG CYS 40 A CYS 40 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf3 A SG CYS 58 A CYS 58 1_555 A SG CYS 110 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
disulf ? disulf4 A SG CYS 65 A CYS 65 1_555 A SG CYS 72 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? 
#
_chem_comp.formula           'C9 H12 N2 O9 V' 
_chem_comp.formula_weight    343.141 
_chem_comp.id                UVC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "URIDINE-2',3'-VANADATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 UVC sing 344 n n 
N1 C6 UVC sing 345 n n 
N1 C1' UVC sing 346 n n 
C2 N3 UVC sing 347 n n 
C2 O2 UVC doub 348 n n 
N3 C4 UVC sing 349 n n 
N3 HN3 UVC sing 350 n n 
C4 C5 UVC sing 351 n n 
C4 O4 UVC doub 352 n n 
C5 C6 UVC doub 353 n n 
C5 H5 UVC sing 354 n n 
C6 H6 UVC sing 355 n n 
C1' C2' UVC sing 356 n n 
C1' O4' UVC sing 357 n n 
C1' H1' UVC sing 358 n n 
C2' O2' UVC sing 359 n n 
C2' C3' UVC sing 360 n n 
C2' H2' UVC sing 361 n n 
O2' V UVC sing 362 n n 
C3' C4' UVC sing 363 n n 
C3' O3' UVC sing 364 n n 
C3' H3' UVC sing 365 n n 
C4' O4' UVC sing 366 n n 
C4' C5' UVC sing 367 n n 
C4' H4' UVC sing 368 n n 
O3' V UVC sing 369 n n 
C5' O5' UVC sing 370 n n 
C5' "H5'1" UVC sing 371 n n 
C5' "H5'2" UVC sing 372 n n 
O5' HO5' UVC sing 373 n n 
V O1V UVC sing 374 n n 
V O2V UVC doub 375 n n 
V O3V UVC sing 376 n n 
O1V HOV1 UVC sing 377 n n 
O3V HOV3 UVC sing 378 n n 
#
_atom_sites.entry_id                     1RUV 
_atom_sites.fract_transf_matrix[1][1]    0.033557 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.009686 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.026178 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019564 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 UVC A 1 125 125 UVC UVC . 
C 3 TBU A 1 126 126 TBU TBU . 
D 4 HOH A 1 201 201 HOH HOH . 
D 4 HOH A 2 204 204 HOH HOH . 
D 4 HOH A 3 205 205 HOH HOH . 
D 4 HOH A 4 206 206 HOH HOH . 
D 4 HOH A 5 207 207 HOH HOH . 
D 4 HOH A 6 208 208 HOH HOH . 
D 4 HOH A 7 210 210 HOH HOH . 
D 4 HOH A 8 211 211 HOH HOH . 
D 4 HOH A 9 212 212 HOH HOH . 
D 4 HOH A 10 213 213 HOH HOH . 
D 4 HOH A 11 214 214 HOH HOH . 
D 4 HOH A 12 215 215 HOH HOH . 
D 4 HOH A 13 216 216 HOH HOH . 
D 4 HOH A 14 217 217 HOH HOH . 
D 4 HOH A 15 218 218 HOH HOH . 
D 4 HOH A 16 219 219 HOH HOH . 
D 4 HOH A 17 220 220 HOH HOH . 
D 4 HOH A 18 221 221 HOH HOH . 
D 4 HOH A 19 222 222 HOH HOH . 
D 4 HOH A 20 223 223 HOH HOH . 
D 4 HOH A 21 226 226 HOH HOH . 
D 4 HOH A 22 227 227 HOH HOH . 
D 4 HOH A 23 228 228 HOH HOH . 
D 4 HOH A 24 229 229 HOH HOH . 
D 4 HOH A 25 230 230 HOH HOH . 
D 4 HOH A 26 231 231 HOH HOH . 
D 4 HOH A 27 232 232 HOH HOH . 
D 4 HOH A 28 233 233 HOH HOH . 
D 4 HOH A 29 234 234 HOH HOH . 
D 4 HOH A 30 235 235 HOH HOH . 
D 4 HOH A 31 236 236 HOH HOH . 
D 4 HOH A 32 237 237 HOH HOH . 
D 4 HOH A 33 238 238 HOH HOH . 
D 4 HOH A 34 239 239 HOH HOH . 
D 4 HOH A 35 241 241 HOH HOH . 
D 4 HOH A 36 242 242 HOH HOH . 
D 4 HOH A 37 243 243 HOH HOH . 
D 4 HOH A 38 244 244 HOH HOH . 
D 4 HOH A 39 246 246 HOH HOH . 
D 4 HOH A 40 247 247 HOH HOH . 
D 4 HOH A 41 248 248 HOH HOH . 
D 4 HOH A 42 249 249 HOH HOH . 
D 4 HOH A 43 250 250 HOH HOH . 
D 4 HOH A 44 251 251 HOH HOH . 
D 4 HOH A 45 252 252 HOH HOH . 
D 4 HOH A 46 253 253 HOH HOH . 
D 4 HOH A 47 268 268 HOH HOH . 
D 4 HOH A 48 269 269 HOH HOH . 
D 4 HOH A 49 272 272 HOH HOH . 
D 4 HOH A 50 282 282 HOH HOH . 
D 4 HOH A 51 283 283 HOH HOH . 
D 4 HOH A 52 284 284 HOH HOH . 
D 4 HOH A 53 285 285 HOH HOH . 
D 4 HOH A 54 286 286 HOH HOH . 
D 4 HOH A 55 293 293 HOH HOH . 
D 4 HOH A 56 294 294 HOH HOH . 
D 4 HOH A 57 295 295 HOH HOH . 
D 4 HOH A 58 296 296 HOH HOH . 
D 4 HOH A 59 297 297 HOH HOH . 
D 4 HOH A 60 298 298 HOH HOH . 
D 4 HOH A 61 304 304 HOH HOH . 
D 4 HOH A 62 305 305 HOH HOH . 
D 4 HOH A 63 306 306 HOH HOH . 
D 4 HOH A 64 307 307 HOH HOH . 
D 4 HOH A 65 308 308 HOH HOH . 
D 4 HOH A 66 310 310 HOH HOH . 
D 4 HOH A 67 311 311 HOH HOH . 
D 4 HOH A 68 312 312 HOH HOH . 
D 4 HOH A 69 316 316 HOH HOH . 
D 4 HOH A 70 317 317 HOH HOH . 
D 4 HOH A 71 318 318 HOH HOH . 
D 4 HOH A 72 319 319 HOH HOH . 
D 4 HOH A 73 320 320 HOH HOH . 
D 4 HOH A 74 321 321 HOH HOH . 
D 4 HOH A 75 323 323 HOH HOH . 
D 4 HOH A 76 326 326 HOH HOH . 
D 4 HOH A 77 327 327 HOH HOH . 
D 4 HOH A 78 328 328 HOH HOH . 
D 4 HOH A 79 329 329 HOH HOH . 
D 4 HOH A 80 330 330 HOH HOH . 
D 4 HOH A 81 331 331 HOH HOH . 
D 4 HOH A 82 334 334 HOH HOH . 
D 4 HOH A 83 337 337 HOH HOH . 
D 4 HOH A 84 338 338 HOH HOH . 
D 4 HOH A 85 339 339 HOH HOH . 
D 4 HOH A 86 340 340 HOH HOH . 
D 4 HOH A 87 344 344 HOH HOH . 
D 4 HOH A 88 348 348 HOH HOH . 
D 4 HOH A 89 349 349 HOH HOH . 
D 4 HOH A 90 350 350 HOH HOH . 
D 4 HOH A 91 352 352 HOH HOH . 
D 4 HOH A 92 356 356 HOH HOH . 
D 4 HOH A 93 357 357 HOH HOH . 
D 4 HOH A 94 358 358 HOH HOH . 
D 4 HOH A 95 359 359 HOH HOH . 
D 4 HOH A 96 360 360 HOH HOH . 
D 4 HOH A 97 361 361 HOH HOH . 
D 4 HOH A 98 365 365 HOH HOH . 
D 4 HOH A 99 369 369 HOH HOH . 
D 4 HOH A 100 371 371 HOH HOH . 
D 4 HOH A 101 372 372 HOH HOH . 
D 4 HOH A 102 373 373 HOH HOH . 
D 4 HOH A 103 376 376 HOH HOH . 
D 4 HOH A 104 380 380 HOH HOH . 
D 4 HOH A 105 387 387 HOH HOH . 
D 4 HOH A 106 400 400 HOH HOH . 
D 4 HOH A 107 401 401 HOH HOH . 
D 4 HOH A 108 402 402 HOH HOH . 
D 4 HOH A 109 403 403 HOH HOH . 
D 4 HOH A 110 404 404 HOH HOH . 
D 4 HOH A 111 405 405 HOH HOH . 
D 4 HOH A 112 406 406 HOH HOH . 
D 4 HOH A 113 407 407 HOH HOH . 
D 4 HOH A 114 408 408 HOH HOH . 
D 4 HOH A 115 409 409 HOH HOH . 
D 4 HOH A 116 410 410 HOH HOH . 
D 4 HOH A 117 411 411 HOH HOH . 
D 4 HOH A 118 412 412 HOH HOH . 
D 4 HOH A 119 413 413 HOH HOH . 
D 4 HOH A 120 414 414 HOH HOH . 
D 4 HOH A 121 415 415 HOH HOH . 
D 4 HOH A 122 416 416 HOH HOH . 
D 4 HOH A 123 417 417 HOH HOH . 
D 4 HOH A 124 418 418 HOH HOH . 
D 4 HOH A 125 419 419 HOH HOH . 
D 4 HOH A 126 420 420 HOH HOH . 
D 4 HOH A 127 421 421 HOH HOH . 
D 4 HOH A 128 422 422 HOH HOH . 
D 4 HOH A 129 423 423 HOH HOH . 
D 4 HOH A 130 424 424 HOH HOH . 
D 4 HOH A 131 425 425 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 UVC . . . B 2 31.798 13.516 9.28 1 8.12 ? N1 UVC 125 A 1 
HETATM 2 C C2 UVC . . . B 2 31.4 13.945 10.654 1 6.19 ? C2 UVC 125 A 1 
HETATM 3 N N3 UVC . . . B 2 32.401 13.643 11.482 1 8.21 ? N3 UVC 125 A 1 
HETATM 4 C C4 UVC . . . B 2 33.589 13.097 11.375 1 10.22 ? C4 UVC 125 A 1 
HETATM 5 C C5 UVC . . . B 2 33.92 12.723 9.968 1 10.72 ? C5 UVC 125 A 1 
HETATM 6 C C6 UVC . . . B 2 32.956 12.969 9.071 1 9.55 ? C6 UVC 125 A 1 
HETATM 7 O O2 UVC . . . B 2 30.383 14.405 10.756 1 4.89 ? O2 UVC 125 A 1 
HETATM 8 O O4 UVC . . . B 2 34.43 12.914 12.306 1 12.84 ? O4 UVC 125 A 1 
HETATM 9 C C1' UVC . . . B 2 30.726 13.809 8.308 1 9.17 ? C1' UVC 125 A 1 
HETATM 10 C C2' UVC . . . B 2 30.86 15.233 7.759 1 9.77 ? C2' UVC 125 A 1 
HETATM 11 O O2' UVC . . . B 2 29.533 15.467 7.408 1 9.36 ? O2' UVC 125 A 1 
HETATM 12 C C3' UVC . . . B 2 31.71 14.972 6.559 1 11.76 ? C3' UVC 125 A 1 
HETATM 13 C C4' UVC . . . B 2 31.362 13.617 6.044 1 13.68 ? C4' UVC 125 A 1 
HETATM 14 O O3' UVC . . . B 2 31.249 15.947 5.674 1 11.29 ? O3' UVC 125 A 1 
HETATM 15 O O4' UVC . . . B 2 30.989 12.783 7.243 1 10.41 ? O4' UVC 125 A 1 
HETATM 16 C C5' UVC . . . B 2 32.253 12.619 5.261 1 15.45 ? C5' UVC 125 A 1 
HETATM 17 O O5' UVC . . . B 2 33.474 12.659 5.929 1 19.27 ? O5' UVC 125 A 1 
HETATM 18 V V UVC . . . B 2 29.586 16.973 6.098 0.75 5.81 ? V UVC 125 A 1 
HETATM 19 O O1V UVC . . . B 2 29.579 18.447 7.093 0.75 6.29 ? O1V UVC 125 A 1 
HETATM 20 O O2V UVC . . . B 2 28.307 16.864 5.708 0.75 5.75 ? O2V UVC 125 A 1 
HETATM 21 O O3V UVC . . . B 2 30.36 17.782 4.547 0.75 8.14 ? O3V UVC 125 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           21 
#