data_1RV1
#
_model_server_result.job_id            AVCByBx5QqdZJhm-1OMnsg 
_model_server_result.datetime_utc      '2025-02-18 01:54:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1rv1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":110}' 
#
_entry.id    1RV1 
#
_exptl.entry_id    1RV1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              686.434 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CIS-[4,5-BIS-(4-BROMOPHENYL)-2-(2-ETHOXY-4-METHOXYPHENYL)-4,5-DIHYDROIMIDAZOL-1-YL]-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]METHANONE 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          114.29 
_cell.angle_gamma         90 
_cell.entry_id            1RV1 
_cell.length_a            122.264 
_cell.length_b            39.727 
_cell.length_c            79.362 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1RV1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C31 H34 Br2 N4 O4' 
_chem_comp.formula_weight    686.434 
_chem_comp.id                IMZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CIS-[4,5-BIS-(4-BROMOPHENYL)-2-(2-ETHOXY-4-METHOXYPHENYL)-4,5-DIHYDROIMIDAZOL-1-YL]-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]METHANONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C4 C40 IMZ sing 173 n n 
C4 N3 IMZ sing 174 n n 
C4 C5 IMZ sing 175 n n 
C4 H4 IMZ sing 176 n n 
C40 C45 IMZ doub 177 n y 
C40 C41 IMZ sing 178 n y 
C45 C44 IMZ sing 179 n y 
C45 H45 IMZ sing 180 n n 
C44 C43 IMZ doub 181 n y 
C44 H44 IMZ sing 182 n n 
C41 C42 IMZ doub 183 n y 
C41 H41 IMZ sing 184 n n 
C42 C43 IMZ sing 185 n y 
C42 H42 IMZ sing 186 n n 
C43 BR43 IMZ sing 187 n n 
N3 C2 IMZ doub 188 n n 
C2 C20 IMZ sing 189 n n 
C2 N1 IMZ sing 190 n n 
C20 C26 IMZ doub 191 n y 
C20 C21 IMZ sing 192 n y 
C26 O26 IMZ sing 193 n n 
C26 C25 IMZ sing 194 n y 
O26 C27 IMZ sing 195 n n 
C27 C28 IMZ sing 196 n n 
C27 H271 IMZ sing 197 n n 
C27 H272 IMZ sing 198 n n 
C28 H281 IMZ sing 199 n n 
C28 H282 IMZ sing 200 n n 
C28 H283 IMZ sing 201 n n 
C25 C23 IMZ doub 202 n y 
C25 H25 IMZ sing 203 n n 
C21 C22 IMZ doub 204 n y 
C21 H21 IMZ sing 205 n n 
C22 C23 IMZ sing 206 n y 
C22 H22 IMZ sing 207 n n 
C23 O23 IMZ sing 208 n n 
O23 C24 IMZ sing 209 n n 
C24 H241 IMZ sing 210 n n 
C24 H242 IMZ sing 211 n n 
C24 H243 IMZ sing 212 n n 
N1 C10 IMZ sing 213 n n 
N1 C5 IMZ sing 214 n n 
C10 O10 IMZ doub 215 n n 
C10 N10 IMZ sing 216 n n 
N10 C15 IMZ sing 217 n n 
N10 C11 IMZ sing 218 n n 
C15 C14 IMZ sing 219 n n 
C15 H151 IMZ sing 220 n n 
C15 H152 IMZ sing 221 n n 
C14 N13 IMZ sing 222 n n 
C14 H141 IMZ sing 223 n n 
C14 H142 IMZ sing 224 n n 
N13 C13 IMZ sing 225 n n 
N13 C12 IMZ sing 226 n n 
C13 C16 IMZ sing 227 n n 
C13 H131 IMZ sing 228 n n 
C13 H132 IMZ sing 229 n n 
C16 O17 IMZ sing 230 n n 
C16 H161 IMZ sing 231 n n 
C16 H162 IMZ sing 232 n n 
O17 H17 IMZ sing 233 n n 
C11 C12 IMZ sing 234 n n 
C11 H111 IMZ sing 235 n n 
C11 H112 IMZ sing 236 n n 
C12 H121 IMZ sing 237 n n 
C12 H122 IMZ sing 238 n n 
C5 C50 IMZ sing 239 n n 
C5 H5 IMZ sing 240 n n 
C50 C51 IMZ doub 241 n y 
C50 C55 IMZ sing 242 n y 
C51 C52 IMZ sing 243 n y 
C51 H51 IMZ sing 244 n n 
C52 C53 IMZ doub 245 n y 
C52 H52 IMZ sing 246 n n 
C55 C54 IMZ doub 247 n y 
C55 H55 IMZ sing 248 n n 
C54 C53 IMZ sing 249 n y 
C54 H54 IMZ sing 250 n n 
C53 BR53 IMZ sing 251 n n 
#
_atom_sites.entry_id                     1RV1 
_atom_sites.fract_transf_matrix[1][1]    0.008179 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003691 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.025172 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013824 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 IMZ A 1 110 1 IMZ IMZ . 
E 2 IMZ A 1 111 1 IMZ IMZ . 
F 2 IMZ B 1 110 1 IMZ IMZ . 
G 2 IMZ B 1 111 1 IMZ IMZ . 
H 2 IMZ C 1 110 1 IMZ IMZ . 
I 3 HOH A 1 1 1 HOH HOH . 
I 3 HOH A 2 2 2 HOH HOH . 
I 3 HOH A 3 3 3 HOH HOH . 
I 3 HOH A 4 4 4 HOH HOH . 
I 3 HOH A 5 5 5 HOH HOH . 
I 3 HOH A 6 6 6 HOH HOH . 
I 3 HOH A 7 7 7 HOH HOH . 
I 3 HOH A 8 8 8 HOH HOH . 
I 3 HOH A 9 10 10 HOH HOH . 
I 3 HOH A 10 11 11 HOH HOH . 
I 3 HOH A 11 12 12 HOH HOH . 
I 3 HOH A 12 13 13 HOH HOH . 
I 3 HOH A 13 14 14 HOH HOH . 
I 3 HOH A 14 15 15 HOH HOH . 
I 3 HOH A 15 16 16 HOH HOH . 
I 3 HOH A 16 17 17 HOH HOH . 
I 3 HOH A 17 18 18 HOH HOH . 
I 3 HOH A 18 19 19 HOH HOH . 
I 3 HOH A 19 20 20 HOH HOH . 
I 3 HOH A 20 21 21 HOH HOH . 
I 3 HOH A 21 22 22 HOH HOH . 
J 3 HOH B 1 112 1 HOH HOH . 
J 3 HOH B 2 113 2 HOH HOH . 
J 3 HOH B 3 114 3 HOH HOH . 
J 3 HOH B 4 115 4 HOH HOH . 
J 3 HOH B 5 116 5 HOH HOH . 
J 3 HOH B 6 117 6 HOH HOH . 
J 3 HOH B 7 118 7 HOH HOH . 
J 3 HOH B 8 119 8 HOH HOH . 
J 3 HOH B 9 120 9 HOH HOH . 
K 3 HOH C 1 9 9 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 IMZ . . . D 2 12.228 8.624 13.624 1 31.53 ? C4 IMZ 110 A 1 
HETATM 2 C C40 IMZ . . . D 2 12.851 8.946 14.979 1 31.78 ? C40 IMZ 110 A 1 
HETATM 3 C C45 IMZ . . . D 2 12.055 9.354 16.049 1 31.9 ? C45 IMZ 110 A 1 
HETATM 4 C C44 IMZ . . . D 2 12.632 9.652 17.295 1 32.08 ? C44 IMZ 110 A 1 
HETATM 5 C C41 IMZ . . . D 2 14.229 8.841 15.16 1 31.87 ? C41 IMZ 110 A 1 
HETATM 6 C C42 IMZ . . . D 2 14.807 9.135 16.385 1 32.04 ? C42 IMZ 110 A 1 
HETATM 7 C C43 IMZ . . . D 2 14.009 9.535 17.449 1 32.18 ? C43 IMZ 110 A 1 
HETATM 8 BR BR43 IMZ . . . D 2 14.779 9.826 19.111 1 32.48 ? BR43 IMZ 110 A 1 
HETATM 9 N N3 IMZ . . . D 2 10.931 9.234 13.474 1 31.53 ? N3 IMZ 110 A 1 
HETATM 10 C C2 IMZ . . . D 2 10.065 8.355 12.888 1 31.48 ? C2 IMZ 110 A 1 
HETATM 11 C C20 IMZ . . . D 2 8.662 8.653 12.556 1 31.55 ? C20 IMZ 110 A 1 
HETATM 12 C C26 IMZ . . . D 2 7.61 7.69 12.62 1 31.55 ? C26 IMZ 110 A 1 
HETATM 13 O O26 IMZ . . . D 2 7.938 6.373 12.881 1 31.51 ? O26 IMZ 110 A 1 
HETATM 14 C C27 IMZ . . . D 2 6.903 5.605 13.472 1 31.34 ? C27 IMZ 110 A 1 
HETATM 15 C C28 IMZ . . . D 2 7.458 4.307 13.954 1 31.28 ? C28 IMZ 110 A 1 
HETATM 16 C C25 IMZ . . . D 2 6.3 8.054 12.379 1 31.56 ? C25 IMZ 110 A 1 
HETATM 17 C C21 IMZ . . . D 2 8.318 9.975 12.222 1 31.59 ? C21 IMZ 110 A 1 
HETATM 18 C C22 IMZ . . . D 2 6.984 10.335 11.976 1 31.63 ? C22 IMZ 110 A 1 
HETATM 19 C C23 IMZ . . . D 2 5.976 9.362 12.061 1 31.57 ? C23 IMZ 110 A 1 
HETATM 20 O O23 IMZ . . . D 2 4.655 9.695 11.834 1 31.6 ? O23 IMZ 110 A 1 
HETATM 21 C C24 IMZ . . . D 2 4.458 10.845 10.988 1 31.51 ? C24 IMZ 110 A 1 
HETATM 22 N N1 IMZ . . . D 2 10.708 7.114 12.617 1 31.42 ? N1 IMZ 110 A 1 
HETATM 23 C C10 IMZ . . . D 2 10.221 6.14 11.809 1 31.42 ? C10 IMZ 110 A 1 
HETATM 24 O O10 IMZ . . . D 2 10.311 4.958 12.125 1 31.38 ? O10 IMZ 110 A 1 
HETATM 25 N N10 IMZ . . . D 2 9.579 6.503 10.678 1 31.43 ? N10 IMZ 110 A 1 
HETATM 26 C C15 IMZ . . . D 2 8.652 5.551 10.023 1 31.4 ? C15 IMZ 110 A 1 
HETATM 27 C C14 IMZ . . . D 2 7.387 6.256 9.561 1 31.49 ? C14 IMZ 110 A 1 
HETATM 28 N N13 IMZ . . . D 2 7.736 7.521 8.849 1 31.55 ? N13 IMZ 110 A 1 
HETATM 29 C C13 IMZ . . . D 2 7.76 7.526 7.383 1 31.63 ? C13 IMZ 110 A 1 
HETATM 30 C C16 IMZ . . . D 2 6.591 6.75 6.841 1 31.79 ? C16 IMZ 110 A 1 
HETATM 31 O O17 IMZ . . . D 2 5.418 7.165 7.519 1 31.89 ? O17 IMZ 110 A 1 
HETATM 32 C C11 IMZ . . . D 2 9.924 7.73 9.928 1 31.43 ? C11 IMZ 110 A 1 
HETATM 33 C C12 IMZ . . . D 2 8.649 8.449 9.54 1 31.5 ? C12 IMZ 110 A 1 
HETATM 34 C C5 IMZ . . . D 2 11.995 7.087 13.331 1 31.33 ? C5 IMZ 110 A 1 
HETATM 35 C C50 IMZ . . . D 2 11.892 6.258 14.636 1 31.08 ? C50 IMZ 110 A 1 
HETATM 36 C C51 IMZ . . . D 2 10.788 6.383 15.478 1 30.89 ? C51 IMZ 110 A 1 
HETATM 37 C C52 IMZ . . . D 2 10.739 5.706 16.707 1 30.68 ? C52 IMZ 110 A 1 
HETATM 38 C C55 IMZ . . . D 2 12.947 5.426 15.027 1 30.88 ? C55 IMZ 110 A 1 
HETATM 39 C C54 IMZ . . . D 2 12.902 4.742 16.252 1 30.68 ? C54 IMZ 110 A 1 
HETATM 40 C C53 IMZ . . . D 2 11.802 4.894 17.088 1 30.66 ? C53 IMZ 110 A 1 
HETATM 41 BR BR53 IMZ . . . D 2 11.821 4.146 18.787 1 30.29 ? BR53 IMZ 110 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           41 
#