data_1RV1 # _model_server_result.job_id W6nudn8H_KASmpZbhW9BDA _model_server_result.datetime_utc '2024-10-18 16:27:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rv1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":111}' # _entry.id 1RV1 # _exptl.entry_id 1RV1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 686.434 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CIS-[4,5-BIS-(4-BROMOPHENYL)-2-(2-ETHOXY-4-METHOXYPHENYL)-4,5-DIHYDROIMIDAZOL-1-YL]-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]METHANONE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.29 _cell.angle_gamma 90 _cell.entry_id 1RV1 _cell.length_a 122.264 _cell.length_b 39.727 _cell.length_c 79.362 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RV1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C31 H34 Br2 N4 O4' _chem_comp.formula_weight 686.434 _chem_comp.id IMZ _chem_comp.mon_nstd_flag . _chem_comp.name CIS-[4,5-BIS-(4-BROMOPHENYL)-2-(2-ETHOXY-4-METHOXYPHENYL)-4,5-DIHYDROIMIDAZOL-1-YL]-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]METHANONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C40 IMZ sing 173 n n C4 N3 IMZ sing 174 n n C4 C5 IMZ sing 175 n n C4 H4 IMZ sing 176 n n C40 C45 IMZ doub 177 n y C40 C41 IMZ sing 178 n y C45 C44 IMZ sing 179 n y C45 H45 IMZ sing 180 n n C44 C43 IMZ doub 181 n y C44 H44 IMZ sing 182 n n C41 C42 IMZ doub 183 n y C41 H41 IMZ sing 184 n n C42 C43 IMZ sing 185 n y C42 H42 IMZ sing 186 n n C43 BR43 IMZ sing 187 n n N3 C2 IMZ doub 188 n n C2 C20 IMZ sing 189 n n C2 N1 IMZ sing 190 n n C20 C26 IMZ doub 191 n y C20 C21 IMZ sing 192 n y C26 O26 IMZ sing 193 n n C26 C25 IMZ sing 194 n y O26 C27 IMZ sing 195 n n C27 C28 IMZ sing 196 n n C27 H271 IMZ sing 197 n n C27 H272 IMZ sing 198 n n C28 H281 IMZ sing 199 n n C28 H282 IMZ sing 200 n n C28 H283 IMZ sing 201 n n C25 C23 IMZ doub 202 n y C25 H25 IMZ sing 203 n n C21 C22 IMZ doub 204 n y C21 H21 IMZ sing 205 n n C22 C23 IMZ sing 206 n y C22 H22 IMZ sing 207 n n C23 O23 IMZ sing 208 n n O23 C24 IMZ sing 209 n n C24 H241 IMZ sing 210 n n C24 H242 IMZ sing 211 n n C24 H243 IMZ sing 212 n n N1 C10 IMZ sing 213 n n N1 C5 IMZ sing 214 n n C10 O10 IMZ doub 215 n n C10 N10 IMZ sing 216 n n N10 C15 IMZ sing 217 n n N10 C11 IMZ sing 218 n n C15 C14 IMZ sing 219 n n C15 H151 IMZ sing 220 n n C15 H152 IMZ sing 221 n n C14 N13 IMZ sing 222 n n C14 H141 IMZ sing 223 n n C14 H142 IMZ sing 224 n n N13 C13 IMZ sing 225 n n N13 C12 IMZ sing 226 n n C13 C16 IMZ sing 227 n n C13 H131 IMZ sing 228 n n C13 H132 IMZ sing 229 n n C16 O17 IMZ sing 230 n n C16 H161 IMZ sing 231 n n C16 H162 IMZ sing 232 n n O17 H17 IMZ sing 233 n n C11 C12 IMZ sing 234 n n C11 H111 IMZ sing 235 n n C11 H112 IMZ sing 236 n n C12 H121 IMZ sing 237 n n C12 H122 IMZ sing 238 n n C5 C50 IMZ sing 239 n n C5 H5 IMZ sing 240 n n C50 C51 IMZ doub 241 n y C50 C55 IMZ sing 242 n y C51 C52 IMZ sing 243 n y C51 H51 IMZ sing 244 n n C52 C53 IMZ doub 245 n y C52 H52 IMZ sing 246 n n C55 C54 IMZ doub 247 n y C55 H55 IMZ sing 248 n n C54 C53 IMZ sing 249 n y C54 H54 IMZ sing 250 n n C53 BR53 IMZ sing 251 n n # _atom_sites.entry_id 1RV1 _atom_sites.fract_transf_matrix[1][1] 0.008179 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003691 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025172 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013824 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 IMZ A 1 110 1 IMZ IMZ . E 2 IMZ A 1 111 1 IMZ IMZ . F 2 IMZ B 1 110 1 IMZ IMZ . G 2 IMZ B 1 111 1 IMZ IMZ . H 2 IMZ C 1 110 1 IMZ IMZ . I 3 HOH A 1 1 1 HOH HOH . I 3 HOH A 2 2 2 HOH HOH . I 3 HOH A 3 3 3 HOH HOH . I 3 HOH A 4 4 4 HOH HOH . I 3 HOH A 5 5 5 HOH HOH . I 3 HOH A 6 6 6 HOH HOH . I 3 HOH A 7 7 7 HOH HOH . I 3 HOH A 8 8 8 HOH HOH . I 3 HOH A 9 10 10 HOH HOH . I 3 HOH A 10 11 11 HOH HOH . I 3 HOH A 11 12 12 HOH HOH . I 3 HOH A 12 13 13 HOH HOH . I 3 HOH A 13 14 14 HOH HOH . I 3 HOH A 14 15 15 HOH HOH . I 3 HOH A 15 16 16 HOH HOH . I 3 HOH A 16 17 17 HOH HOH . I 3 HOH A 17 18 18 HOH HOH . I 3 HOH A 18 19 19 HOH HOH . I 3 HOH A 19 20 20 HOH HOH . I 3 HOH A 20 21 21 HOH HOH . I 3 HOH A 21 22 22 HOH HOH . J 3 HOH B 1 112 1 HOH HOH . J 3 HOH B 2 113 2 HOH HOH . J 3 HOH B 3 114 3 HOH HOH . J 3 HOH B 4 115 4 HOH HOH . J 3 HOH B 5 116 5 HOH HOH . J 3 HOH B 6 117 6 HOH HOH . J 3 HOH B 7 118 7 HOH HOH . J 3 HOH B 8 119 8 HOH HOH . J 3 HOH B 9 120 9 HOH HOH . K 3 HOH C 1 9 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 IMZ . . . E 2 26.569 10.17 24.799 1 46.23 ? C4 IMZ 111 A 1 HETATM 2 C C40 IMZ . . . E 2 26.176 9.684 26.152 1 46.51 ? C40 IMZ 111 A 1 HETATM 3 C C45 IMZ . . . E 2 25.375 10.464 26.969 1 46.63 ? C45 IMZ 111 A 1 HETATM 4 C C44 IMZ . . . E 2 25.055 10.039 28.234 1 46.85 ? C44 IMZ 111 A 1 HETATM 5 C C41 IMZ . . . E 2 26.649 8.464 26.617 1 46.63 ? C41 IMZ 111 A 1 HETATM 6 C C42 IMZ . . . E 2 26.332 8.031 27.878 1 46.86 ? C42 IMZ 111 A 1 HETATM 7 C C43 IMZ . . . E 2 25.539 8.823 28.679 1 46.97 ? C43 IMZ 111 A 1 HETATM 8 BR BR43 IMZ . . . E 2 25.153 8.266 30.374 1 47.48 ? BR43 IMZ 111 A 1 HETATM 9 N N3 IMZ . . . E 2 26.068 11.496 24.517 1 46.2 ? N3 IMZ 111 A 1 HETATM 10 C C2 IMZ . . . E 2 25.815 11.583 23.178 1 46.13 ? C2 IMZ 111 A 1 HETATM 11 C C20 IMZ . . . E 2 25.468 12.807 22.446 1 46.15 ? C20 IMZ 111 A 1 HETATM 12 C C26 IMZ . . . E 2 24.315 12.899 21.633 1 46.18 ? C26 IMZ 111 A 1 HETATM 13 O O26 IMZ . . . E 2 23.557 11.756 21.438 1 46.17 ? O26 IMZ 111 A 1 HETATM 14 C C27 IMZ . . . E 2 22.897 11.697 20.177 1 46.12 ? C27 IMZ 111 A 1 HETATM 15 C C28 IMZ . . . E 2 22.051 10.448 20.062 1 46.07 ? C28 IMZ 111 A 1 HETATM 16 C C25 IMZ . . . E 2 23.992 14.08 20.992 1 46.19 ? C25 IMZ 111 A 1 HETATM 17 C C21 IMZ . . . E 2 26.279 13.954 22.575 1 46.17 ? C21 IMZ 111 A 1 HETATM 18 C C22 IMZ . . . E 2 25.969 15.139 21.905 1 46.16 ? C22 IMZ 111 A 1 HETATM 19 C C23 IMZ . . . E 2 24.818 15.193 21.105 1 46.18 ? C23 IMZ 111 A 1 HETATM 20 O O23 IMZ . . . E 2 24.507 16.329 20.383 1 46.16 ? O23 IMZ 111 A 1 HETATM 21 C C24 IMZ . . . E 2 25.649 17.015 19.859 1 46.13 ? C24 IMZ 111 A 1 HETATM 22 N N1 IMZ . . . E 2 25.966 10.303 22.556 1 46.07 ? N1 IMZ 111 A 1 HETATM 23 C C10 IMZ . . . E 2 25.621 10.036 21.281 1 46.02 ? C10 IMZ 111 A 1 HETATM 24 O O10 IMZ . . . E 2 24.738 9.227 21.014 1 46.05 ? O10 IMZ 111 A 1 HETATM 25 N N10 IMZ . . . E 2 26.298 10.678 20.311 1 45.96 ? N10 IMZ 111 A 1 HETATM 26 C C15 IMZ . . . E 2 26.001 10.368 18.905 1 45.91 ? C15 IMZ 111 A 1 HETATM 27 C C14 IMZ . . . E 2 26.016 11.637 18.078 1 45.9 ? C14 IMZ 111 A 1 HETATM 28 N N13 IMZ . . . E 2 27.262 12.403 18.339 1 45.93 ? N13 IMZ 111 A 1 HETATM 29 C C13 IMZ . . . E 2 27.686 13.367 17.312 1 45.93 ? C13 IMZ 111 A 1 HETATM 30 C C16 IMZ . . . E 2 27.57 12.735 15.941 1 46 ? C16 IMZ 111 A 1 HETATM 31 O O17 IMZ . . . E 2 28.024 13.618 14.94 1 46.05 ? O17 IMZ 111 A 1 HETATM 32 C C11 IMZ . . . E 2 27.527 11.465 20.597 1 45.91 ? C11 IMZ 111 A 1 HETATM 33 C C12 IMZ . . . E 2 27.572 12.726 19.75 1 45.88 ? C12 IMZ 111 A 1 HETATM 34 C C5 IMZ . . . E 2 26.058 9.295 23.62 1 46.04 ? C5 IMZ 111 A 1 HETATM 35 C C50 IMZ . . . E 2 24.67 8.682 23.941 1 45.81 ? C50 IMZ 111 A 1 HETATM 36 C C51 IMZ . . . E 2 23.522 9.467 23.947 1 45.69 ? C51 IMZ 111 A 1 HETATM 37 C C52 IMZ . . . E 2 22.268 8.912 24.283 1 45.49 ? C52 IMZ 111 A 1 HETATM 38 C C55 IMZ . . . E 2 24.558 7.334 24.268 1 45.66 ? C55 IMZ 111 A 1 HETATM 39 C C54 IMZ . . . E 2 23.316 6.773 24.601 1 45.47 ? C54 IMZ 111 A 1 HETATM 40 C C53 IMZ . . . E 2 22.177 7.57 24.606 1 45.43 ? C53 IMZ 111 A 1 HETATM 41 BR BR53 IMZ . . . E 2 20.526 6.833 25.05 1 44.94 ? BR53 IMZ 111 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 41 #