data_1RV6
#
_model_server_result.job_id            '_kYwqIeQYHffhiTp9kdxoQ' 
_model_server_result.datetime_utc      '2025-08-31 06:26:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1rv6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":301}' 
#
_entry.id    1RV6 
#
_exptl.entry_id    1RV6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              282.334 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1RV6 
_cell.length_a            54.281 
_cell.length_b            71.979 
_cell.length_c            115.346 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1RV6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 16 V CYS 34 1_555 A SG CYS 58 V CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf2 A SG CYS 41 V CYS 59 1_555 B SG CYS 50 W CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
disulf ? disulf3 A SG CYS 47 V CYS 65 1_555 A SG CYS 92 V CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 A SG CYS 50 V CYS 68 1_555 B SG CYS 41 W CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf5 A SG CYS 51 V CYS 69 1_555 A SG CYS 94 V CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf6 B SG CYS 16 W CYS 34 1_555 B SG CYS 58 W CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf7 B SG CYS 47 W CYS 65 1_555 B SG CYS 92 W CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf8 B SG CYS 51 W CYS 69 1_555 B SG CYS 94 W CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
disulf ? disulf9 C SG CYS 29 X CYS 158 1_555 C SG CYS 78 X CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf10 D SG CYS 29 Y CYS 158 1_555 D SG CYS 78 Y CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
#
_chem_comp.formula           'C11 H26 N2 O6' 
_chem_comp.formula_weight    282.334 
_chem_comp.id                B3P 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 B3P sing 70 n n 
C1 C3 B3P sing 71 n n 
C1 H11 B3P sing 72 n n 
C1 H12 B3P sing 73 n n 
C2 N2 B3P sing 74 n n 
C2 H21 B3P sing 75 n n 
C2 H22 B3P sing 76 n n 
C3 N1 B3P sing 77 n n 
C3 H31 B3P sing 78 n n 
C3 H32 B3P sing 79 n n 
N1 C4 B3P sing 80 n n 
N1 HN1 B3P sing 81 n n 
C4 C5 B3P sing 82 n n 
C4 C6 B3P sing 83 n n 
C4 C7 B3P sing 84 n n 
C5 O4 B3P sing 85 n n 
C5 H51 B3P sing 86 n n 
C5 H52 B3P sing 87 n n 
C6 O5 B3P sing 88 n n 
C6 H61 B3P sing 89 n n 
C6 H62 B3P sing 90 n n 
C7 O6 B3P sing 91 n n 
C7 H71 B3P sing 92 n n 
C7 H72 B3P sing 93 n n 
N2 C8 B3P sing 94 n n 
N2 HN2 B3P sing 95 n n 
C8 C9 B3P sing 96 n n 
C8 C10 B3P sing 97 n n 
C8 C11 B3P sing 98 n n 
C9 O1 B3P sing 99 n n 
C9 H91 B3P sing 100 n n 
C9 H92 B3P sing 101 n n 
C10 O2 B3P sing 102 n n 
C10 H101 B3P sing 103 n n 
C10 H102 B3P sing 104 n n 
C11 O3 B3P sing 105 n n 
C11 H111 B3P sing 106 n n 
C11 H112 B3P sing 107 n n 
O1 HO1 B3P sing 108 n n 
O2 HO2 B3P sing 109 n n 
O3 HO3 B3P sing 110 n n 
O4 HO4 B3P sing 111 n n 
O5 HO5 B3P sing 112 n n 
O6 HO6 B3P sing 113 n n 
#
_atom_sites.entry_id                     1RV6 
_atom_sites.fract_transf_matrix[1][1]    0.018423 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013893 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00867 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 B3P W 1 301 1 B3P RES . 
F 4 HOH V 1 120 0 HOH WAT . 
F 4 HOH V 2 121 3 HOH WAT . 
F 4 HOH V 3 122 4 HOH WAT . 
F 4 HOH V 4 123 6 HOH WAT . 
F 4 HOH V 5 124 10 HOH WAT . 
F 4 HOH V 6 125 11 HOH WAT . 
F 4 HOH V 7 126 19 HOH WAT . 
F 4 HOH V 8 127 20 HOH WAT . 
F 4 HOH V 9 128 21 HOH WAT . 
F 4 HOH V 10 129 22 HOH WAT . 
F 4 HOH V 11 130 23 HOH WAT . 
F 4 HOH V 12 131 25 HOH WAT . 
F 4 HOH V 13 132 26 HOH WAT . 
F 4 HOH V 14 133 28 HOH WAT . 
F 4 HOH V 15 134 29 HOH WAT . 
F 4 HOH V 16 135 36 HOH WAT . 
F 4 HOH V 17 136 37 HOH WAT . 
F 4 HOH V 18 137 40 HOH WAT . 
F 4 HOH V 19 138 41 HOH WAT . 
F 4 HOH V 20 139 45 HOH WAT . 
F 4 HOH V 21 140 52 HOH WAT . 
F 4 HOH V 22 141 53 HOH WAT . 
F 4 HOH V 23 142 56 HOH WAT . 
F 4 HOH V 24 143 58 HOH WAT . 
F 4 HOH V 25 144 64 HOH WAT . 
F 4 HOH V 26 145 65 HOH WAT . 
F 4 HOH V 27 146 70 HOH WAT . 
F 4 HOH V 28 147 71 HOH WAT . 
F 4 HOH V 29 148 74 HOH WAT . 
F 4 HOH V 30 149 82 HOH WAT . 
F 4 HOH V 31 150 83 HOH WAT . 
F 4 HOH V 32 151 90 HOH WAT . 
F 4 HOH V 33 152 92 HOH WAT . 
F 4 HOH V 34 153 95 HOH WAT . 
F 4 HOH V 35 154 101 HOH WAT . 
F 4 HOH V 36 155 102 HOH WAT . 
F 4 HOH V 37 156 106 HOH WAT . 
F 4 HOH V 38 157 108 HOH WAT . 
F 4 HOH V 39 158 109 HOH WAT . 
F 4 HOH V 40 159 110 HOH WAT . 
F 4 HOH V 41 160 115 HOH WAT . 
F 4 HOH V 42 161 117 HOH WAT . 
F 4 HOH V 43 162 123 HOH WAT . 
F 4 HOH V 44 163 124 HOH WAT . 
F 4 HOH V 45 164 125 HOH WAT . 
F 4 HOH V 46 165 132 HOH WAT . 
F 4 HOH V 47 166 142 HOH WAT . 
F 4 HOH V 48 167 143 HOH WAT . 
F 4 HOH V 49 168 144 HOH WAT . 
F 4 HOH V 50 169 151 HOH WAT . 
F 4 HOH V 51 170 153 HOH WAT . 
G 4 HOH W 1 302 1 HOH WAT . 
G 4 HOH W 2 303 2 HOH WAT . 
G 4 HOH W 3 304 5 HOH WAT . 
G 4 HOH W 4 305 7 HOH WAT . 
G 4 HOH W 5 306 9 HOH WAT . 
G 4 HOH W 6 307 12 HOH WAT . 
G 4 HOH W 7 308 15 HOH WAT . 
G 4 HOH W 8 309 16 HOH WAT . 
G 4 HOH W 9 310 18 HOH WAT . 
G 4 HOH W 10 311 27 HOH WAT . 
G 4 HOH W 11 312 30 HOH WAT . 
G 4 HOH W 12 313 34 HOH WAT . 
G 4 HOH W 13 314 35 HOH WAT . 
G 4 HOH W 14 315 38 HOH WAT . 
G 4 HOH W 15 316 39 HOH WAT . 
G 4 HOH W 16 317 44 HOH WAT . 
G 4 HOH W 17 318 46 HOH WAT . 
G 4 HOH W 18 319 55 HOH WAT . 
G 4 HOH W 19 320 57 HOH WAT . 
G 4 HOH W 20 321 59 HOH WAT . 
G 4 HOH W 21 322 60 HOH WAT . 
G 4 HOH W 22 323 63 HOH WAT . 
G 4 HOH W 23 324 68 HOH WAT . 
G 4 HOH W 24 325 72 HOH WAT . 
G 4 HOH W 25 326 76 HOH WAT . 
G 4 HOH W 26 327 78 HOH WAT . 
G 4 HOH W 27 328 80 HOH WAT . 
G 4 HOH W 28 329 81 HOH WAT . 
G 4 HOH W 29 330 86 HOH WAT . 
G 4 HOH W 30 331 91 HOH WAT . 
G 4 HOH W 31 332 94 HOH WAT . 
G 4 HOH W 32 333 98 HOH WAT . 
G 4 HOH W 33 334 99 HOH WAT . 
G 4 HOH W 34 335 104 HOH WAT . 
G 4 HOH W 35 336 105 HOH WAT . 
G 4 HOH W 36 337 116 HOH WAT . 
G 4 HOH W 37 338 118 HOH WAT . 
G 4 HOH W 38 339 119 HOH WAT . 
G 4 HOH W 39 340 120 HOH WAT . 
G 4 HOH W 40 341 121 HOH WAT . 
G 4 HOH W 41 342 129 HOH WAT . 
G 4 HOH W 42 343 130 HOH WAT . 
G 4 HOH W 43 344 131 HOH WAT . 
G 4 HOH W 44 345 133 HOH WAT . 
G 4 HOH W 45 346 139 HOH WAT . 
G 4 HOH W 46 347 146 HOH WAT . 
G 4 HOH W 47 348 149 HOH WAT . 
G 4 HOH W 48 349 152 HOH WAT . 
G 4 HOH W 49 350 154 HOH WAT . 
G 4 HOH W 50 351 155 HOH WAT . 
H 4 HOH X 1 230 8 HOH WAT . 
H 4 HOH X 2 231 13 HOH WAT . 
H 4 HOH X 3 232 14 HOH WAT . 
H 4 HOH X 4 233 24 HOH WAT . 
H 4 HOH X 5 234 32 HOH WAT . 
H 4 HOH X 6 235 33 HOH WAT . 
H 4 HOH X 7 236 42 HOH WAT . 
H 4 HOH X 8 237 48 HOH WAT . 
H 4 HOH X 9 238 49 HOH WAT . 
H 4 HOH X 10 239 50 HOH WAT . 
H 4 HOH X 11 240 61 HOH WAT . 
H 4 HOH X 12 241 75 HOH WAT . 
H 4 HOH X 13 242 79 HOH WAT . 
H 4 HOH X 14 243 84 HOH WAT . 
H 4 HOH X 15 244 87 HOH WAT . 
H 4 HOH X 16 245 88 HOH WAT . 
H 4 HOH X 17 246 89 HOH WAT . 
H 4 HOH X 18 247 93 HOH WAT . 
H 4 HOH X 19 248 96 HOH WAT . 
H 4 HOH X 20 249 97 HOH WAT . 
H 4 HOH X 21 250 100 HOH WAT . 
H 4 HOH X 22 251 103 HOH WAT . 
H 4 HOH X 23 252 107 HOH WAT . 
H 4 HOH X 24 253 111 HOH WAT . 
H 4 HOH X 25 254 112 HOH WAT . 
H 4 HOH X 26 255 113 HOH WAT . 
H 4 HOH X 27 256 114 HOH WAT . 
H 4 HOH X 28 257 122 HOH WAT . 
H 4 HOH X 29 258 126 HOH WAT . 
H 4 HOH X 30 259 127 HOH WAT . 
H 4 HOH X 31 260 128 HOH WAT . 
H 4 HOH X 32 261 135 HOH WAT . 
H 4 HOH X 33 262 137 HOH WAT . 
H 4 HOH X 34 263 141 HOH WAT . 
H 4 HOH X 35 264 150 HOH WAT . 
H 4 HOH X 36 265 157 HOH WAT . 
H 4 HOH X 37 266 158 HOH WAT . 
H 4 HOH X 38 267 160 HOH WAT . 
I 4 HOH Y 1 230 17 HOH WAT . 
I 4 HOH Y 2 231 31 HOH WAT . 
I 4 HOH Y 3 232 43 HOH WAT . 
I 4 HOH Y 4 233 47 HOH WAT . 
I 4 HOH Y 5 234 51 HOH WAT . 
I 4 HOH Y 6 235 54 HOH WAT . 
I 4 HOH Y 7 236 62 HOH WAT . 
I 4 HOH Y 8 237 66 HOH WAT . 
I 4 HOH Y 9 238 67 HOH WAT . 
I 4 HOH Y 10 239 69 HOH WAT . 
I 4 HOH Y 11 240 73 HOH WAT . 
I 4 HOH Y 12 241 77 HOH WAT . 
I 4 HOH Y 13 242 85 HOH WAT . 
I 4 HOH Y 14 243 134 HOH WAT . 
I 4 HOH Y 15 244 136 HOH WAT . 
I 4 HOH Y 16 245 138 HOH WAT . 
I 4 HOH Y 17 246 140 HOH WAT . 
I 4 HOH Y 18 247 145 HOH WAT . 
I 4 HOH Y 19 248 147 HOH WAT . 
I 4 HOH Y 20 249 148 HOH WAT . 
I 4 HOH Y 21 250 156 HOH WAT . 
I 4 HOH Y 22 251 159 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 B3P . . . E 3 41.544 26.466 6.961 1 28.95 ? C1 B3P 301 W 1 
HETATM 2 C C2 B3P . . . E 3 42.594 25.359 7.057 1 25.33 ? C2 B3P 301 W 1 
HETATM 3 C C3 B3P . . . E 3 41.842 27.533 5.922 1 35.17 ? C3 B3P 301 W 1 
HETATM 4 N N1 B3P . . . E 3 42.262 28.756 6.585 1 31.97 ? N1 B3P 301 W 1 
HETATM 5 C C4 B3P . . . E 3 41.562 30.039 6.571 1 27.68 ? C4 B3P 301 W 1 
HETATM 6 C C5 B3P . . . E 3 41.857 30.734 5.236 1 22.3 ? C5 B3P 301 W 1 
HETATM 7 C C6 B3P . . . E 3 40.048 29.984 6.837 1 27.73 ? C6 B3P 301 W 1 
HETATM 8 C C7 B3P . . . E 3 42.167 30.806 7.745 1 24.33 ? C7 B3P 301 W 1 
HETATM 9 N N2 B3P . . . E 3 41.931 24.102 7.388 1 23.66 ? N2 B3P 301 W 1 
HETATM 10 C C8 B3P . . . E 3 42.541 22.862 7.831 1 21.64 ? C8 B3P 301 W 1 
HETATM 11 C C9 B3P . . . E 3 41.911 22.491 9.171 1 25.78 ? C9 B3P 301 W 1 
HETATM 12 C C10 B3P . . . E 3 44.043 22.987 8.009 1 19.41 ? C10 B3P 301 W 1 
HETATM 13 C C11 B3P . . . E 3 42.222 21.768 6.813 1 24.15 ? C11 B3P 301 W 1 
HETATM 14 O O1 B3P . . . E 3 40.49 22.627 9.118 1 25.53 ? O1 B3P 301 W 1 
HETATM 15 O O2 B3P . . . E 3 44.703 22.904 6.763 1 21.82 ? O2 B3P 301 W 1 
HETATM 16 O O3 B3P . . . E 3 42.57 20.482 7.343 1 21.75 ? O3 B3P 301 W 1 
HETATM 17 O O4 B3P . . . E 3 41.559 32.115 5.335 1 20.67 ? O4 B3P 301 W 1 
HETATM 18 O O5 B3P . . . E 3 39.276 29.421 5.779 1 24.98 ? O5 B3P 301 W 1 
HETATM 19 O O6 B3P . . . E 3 43.583 30.731 7.691 1 18.99 ? O6 B3P 301 W 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           415 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           19 
#