data_1RV7 # _model_server_result.job_id Fbp9K7g37ov1BYQlqR-uZA _model_server_result.datetime_utc '2024-11-22 07:59:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rv7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 1RV7 # _exptl.entry_id 1RV7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 628.801 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{1-BENZYL-4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]-3-HYDROXY-5-PHENYL-PENTYL}-3-METHYL-2-(2-OXO-TETRAHYDRO-PYRIMIDIN-1-YL)-BUTYRAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RV7 _cell.length_a 44.975 _cell.length_b 44.975 _cell.length_c 103.676 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RV7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C37 H48 N4 O5' _chem_comp.formula_weight 628.801 _chem_comp.id AB1 _chem_comp.mon_nstd_flag . _chem_comp.name N-{1-BENZYL-4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]-3-HYDROXY-5-PHENYL-PENTYL}-3-METHYL-2-(2-OXO-TETRAHYDRO-PYRIMIDIN-1-YL)-BUTYRAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ABT-378;LOPINAVIR # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N2 AB1 sing 1 n n C1 C37 AB1 sing 2 n n C1 H2 AB1 sing 3 n n C1 H3 AB1 sing 4 n n C2 N1 AB1 sing 5 n n C2 C37 AB1 sing 6 n n C2 H4 AB1 sing 7 n n C2 H5 AB1 sing 8 n n N1 C3 AB1 sing 9 n n N1 C10 AB1 sing 10 n n C3 N2 AB1 sing 11 n n C3 O1 AB1 doub 12 n n N2 H8 AB1 sing 13 n n C4 C5 AB1 doub 14 n y C4 C9 AB1 sing 15 n y C4 C29 AB1 sing 16 n n C5 C6 AB1 sing 17 n y C5 H30 AB1 sing 18 n n C6 C7 AB1 doub 19 n y C6 H31 AB1 sing 20 n n C7 C8 AB1 sing 21 n y C7 H32 AB1 sing 22 n n C8 C9 AB1 doub 23 n y C8 H33 AB1 sing 24 n n C9 H34 AB1 sing 25 n n C10 C11 AB1 sing 26 n n C10 C13 AB1 sing 27 n n C10 H9 AB1 sing 28 n n C11 N3 AB1 sing 29 n n C11 O2 AB1 doub 30 n n N3 C12 AB1 sing 31 n n N3 H15 AB1 sing 32 n n C12 C22 AB1 sing 33 n n C12 C23 AB1 sing 34 n n C12 H16 AB1 sing 35 n n C13 C14 AB1 sing 36 n n C13 C15 AB1 sing 37 n n C13 H10 AB1 sing 38 n n C14 H11 AB1 sing 39 n n C14 H12 AB1 sing 40 n n C14 H47 AB1 sing 41 n n C15 H13 AB1 sing 42 n n C15 H14 AB1 sing 43 n n C15 H48 AB1 sing 44 n n C16 C17 AB1 doub 45 n y C16 C21 AB1 sing 46 n y C16 H20 AB1 sing 47 n n C17 C18 AB1 sing 48 n y C17 H21 AB1 sing 49 n n C18 C19 AB1 doub 50 n y C18 H22 AB1 sing 51 n n C19 C20 AB1 sing 52 n y C19 H23 AB1 sing 53 n n C20 C21 AB1 doub 54 n y C20 C22 AB1 sing 55 n n C21 H19 AB1 sing 56 n n C22 H17 AB1 sing 57 n n C22 H18 AB1 sing 58 n n C23 C24 AB1 sing 59 n n C23 H24 AB1 sing 60 n n C23 H25 AB1 sing 61 n n C24 C25 AB1 sing 62 n n C24 O4 AB1 sing 63 n n C24 H26 AB1 sing 64 n n C25 N4 AB1 sing 65 n n C25 C29 AB1 sing 66 n n C25 H27 AB1 sing 67 n n N4 C26 AB1 sing 68 n n N4 H35 AB1 sing 69 n n C26 C27 AB1 sing 70 n n C26 O5 AB1 doub 71 n n C27 O3 AB1 sing 72 n n C27 H36 AB1 sing 73 n n C27 H37 AB1 sing 74 n n O3 C28 AB1 sing 75 n n C28 C30 AB1 doub 76 n y C28 C34 AB1 sing 77 n y O4 H1 AB1 sing 78 n n C29 H28 AB1 sing 79 n n C29 H29 AB1 sing 80 n n C30 C31 AB1 sing 81 n y C30 C36 AB1 sing 82 n n C31 C32 AB1 doub 83 n y C31 H41 AB1 sing 84 n n C32 C33 AB1 sing 85 n y C32 H42 AB1 sing 86 n n C33 C34 AB1 doub 87 n y C33 H43 AB1 sing 88 n n C34 C35 AB1 sing 89 n n C35 H44 AB1 sing 90 n n C35 H45 AB1 sing 91 n n C35 H46 AB1 sing 92 n n C36 H38 AB1 sing 93 n n C36 H39 AB1 sing 94 n n C36 H40 AB1 sing 95 n n C37 H6 AB1 sing 96 n n C37 H7 AB1 sing 97 n n # _atom_sites.entry_id 1RV7 _atom_sites.fract_transf_matrix[1][1] 0.022235 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022235 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009645 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AB1 B 1 1001 1 AB1 AB1 . D 3 HOH A 1 100 1 HOH HOH . D 3 HOH A 2 101 2 HOH HOH . D 3 HOH A 3 102 3 HOH HOH . D 3 HOH A 4 103 4 HOH HOH . D 3 HOH A 5 104 5 HOH HOH . D 3 HOH A 6 105 6 HOH HOH . D 3 HOH A 7 106 7 HOH HOH . D 3 HOH A 8 107 8 HOH HOH . D 3 HOH A 9 108 9 HOH HOH . D 3 HOH A 10 109 10 HOH HOH . D 3 HOH A 11 110 11 HOH HOH . D 3 HOH A 12 111 12 HOH HOH . D 3 HOH A 13 112 13 HOH HOH . D 3 HOH A 14 113 14 HOH HOH . D 3 HOH A 15 114 15 HOH HOH . D 3 HOH A 16 115 16 HOH HOH . D 3 HOH A 17 116 17 HOH HOH . D 3 HOH A 18 117 18 HOH HOH . D 3 HOH A 19 118 19 HOH HOH . D 3 HOH A 20 119 20 HOH HOH . D 3 HOH A 21 120 21 HOH HOH . D 3 HOH A 22 121 23 HOH HOH . D 3 HOH A 23 122 24 HOH HOH . D 3 HOH A 24 123 25 HOH HOH . D 3 HOH A 25 124 26 HOH HOH . D 3 HOH A 26 125 27 HOH HOH . D 3 HOH A 27 126 28 HOH HOH . D 3 HOH A 28 127 29 HOH HOH . D 3 HOH A 29 128 30 HOH HOH . D 3 HOH A 30 129 31 HOH HOH . D 3 HOH A 31 130 32 HOH HOH . D 3 HOH A 32 131 33 HOH HOH . D 3 HOH A 33 132 34 HOH HOH . D 3 HOH A 34 133 35 HOH HOH . D 3 HOH A 35 134 36 HOH HOH . D 3 HOH A 36 135 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AB1 . . . C 2 16.482 32.882 7.013 0.5 34.22 ? C1 AB1 1001 B 1 HETATM 2 C C2 AB1 . . . C 2 17.021 32.636 4.385 0.5 36.26 ? C2 AB1 1001 B 1 HETATM 3 N N1 AB1 . . . C 2 16.934 34.13 4.309 0.5 40.29 ? N1 AB1 1001 B 1 HETATM 4 C C3 AB1 . . . C 2 16.835 34.91 5.379 0.5 40.83 ? C3 AB1 1001 B 1 HETATM 5 N N2 AB1 . . . C 2 16.574 34.295 6.548 0.5 49.47 ? N2 AB1 1001 B 1 HETATM 6 C C4 AB1 . . . C 2 17.328 35.315 -2.829 0.5 33.75 ? C4 AB1 1001 B 1 HETATM 7 C C5 AB1 . . . C 2 16.699 35.143 -4.224 0.5 27.18 ? C5 AB1 1001 B 1 HETATM 8 C C6 AB1 . . . C 2 17.31 34.2 -5.203 0.5 24.04 ? C6 AB1 1001 B 1 HETATM 9 C C7 AB1 . . . C 2 18.533 33.524 -4.935 0.5 16.91 ? C7 AB1 1001 B 1 HETATM 10 C C8 AB1 . . . C 2 19.146 33.656 -3.592 0.5 26.92 ? C8 AB1 1001 B 1 HETATM 11 C C9 AB1 . . . C 2 18.577 34.463 -2.492 0.5 25.92 ? C9 AB1 1001 B 1 HETATM 12 O O1 AB1 . . . C 2 16.879 36.102 5.405 0.5 36.8 ? O1 AB1 1001 B 1 HETATM 13 C C10 AB1 . . . C 2 17.293 34.681 2.971 0.5 37.9 ? C10 AB1 1001 B 1 HETATM 14 C C11 AB1 . . . C 2 16.07 34.527 2.159 0.5 26.29 ? C11 AB1 1001 B 1 HETATM 15 N N3 AB1 . . . C 2 15.3 35.53 2.351 0.5 25.6 ? N3 AB1 1001 B 1 HETATM 16 C C12 AB1 . . . C 2 14.077 35.633 1.473 0.5 33.16 ? C12 AB1 1001 B 1 HETATM 17 C C13 AB1 . . . C 2 18.572 33.897 2.298 0.5 39.53 ? C13 AB1 1001 B 1 HETATM 18 C C14 AB1 . . . C 2 18.688 34.033 0.708 0.5 43.57 ? C14 AB1 1001 B 1 HETATM 19 C C15 AB1 . . . C 2 20.016 34.211 3.022 0.5 36.05 ? C15 AB1 1001 B 1 HETATM 20 O O2 AB1 . . . C 2 15.979 33.574 1.475 0.5 13.03 ? O2 AB1 1001 B 1 HETATM 21 C C16 AB1 . . . C 2 12.864 31.817 3.521 0.5 35 ? C16 AB1 1001 B 1 HETATM 22 C C17 AB1 . . . C 2 12.904 31.95 5.041 0.5 23.39 ? C17 AB1 1001 B 1 HETATM 23 C C18 AB1 . . . C 2 12.952 33.193 5.617 0.5 24.47 ? C18 AB1 1001 B 1 HETATM 24 C C19 AB1 . . . C 2 13.021 34.28 4.685 0.5 31.82 ? C19 AB1 1001 B 1 HETATM 25 C C20 AB1 . . . C 2 12.961 34.184 3.177 0.5 31.35 ? C20 AB1 1001 B 1 HETATM 26 C C21 AB1 . . . C 2 12.731 32.882 2.56 0.5 29.66 ? C21 AB1 1001 B 1 HETATM 27 C C22 AB1 . . . C 2 12.761 35.372 2.167 0.5 26.31 ? C22 AB1 1001 B 1 HETATM 28 C C23 AB1 . . . C 2 13.98 36.994 0.676 0.5 34.01 ? C23 AB1 1001 B 1 HETATM 29 C C24 AB1 . . . C 2 15.267 37.413 -0.043 0.5 34.33 ? C24 AB1 1001 B 1 HETATM 30 C C25 AB1 . . . C 2 15.628 36.306 -0.995 0.5 38.6 ? C25 AB1 1001 B 1 HETATM 31 N N4 AB1 . . . C 2 14.493 36.029 -1.9 0.5 30.32 ? N4 AB1 1001 B 1 HETATM 32 C C26 AB1 . . . C 2 13.802 34.803 -1.759 0.5 31.36 ? C26 AB1 1001 B 1 HETATM 33 C C27 AB1 . . . C 2 12.664 34.76 -2.881 0.5 29.94 ? C27 AB1 1001 B 1 HETATM 34 O O3 AB1 . . . C 2 13.073 35.529 -4.102 0.5 25.64 ? O3 AB1 1001 B 1 HETATM 35 C C28 AB1 . . . C 2 12.323 36.472 -4.93 0.5 34.92 ? C28 AB1 1001 B 1 HETATM 36 O O4 AB1 . . . C 2 15.064 38.549 -0.766 0.5 34.77 ? O4 AB1 1001 B 1 HETATM 37 C C29 AB1 . . . C 2 16.85 36.55 -1.874 0.5 32.97 ? C29 AB1 1001 B 1 HETATM 38 O O5 AB1 . . . C 2 13.943 33.932 -0.838 0.5 15.32 ? O5 AB1 1001 B 1 HETATM 39 C C30 AB1 . . . C 2 11.752 37.857 -4.327 0.5 34.59 ? C30 AB1 1001 B 1 HETATM 40 C C31 AB1 . . . C 2 11.456 38.751 -5.247 0.5 33.26 ? C31 AB1 1001 B 1 HETATM 41 C C32 AB1 . . . C 2 11.546 38.441 -6.702 0.5 38.66 ? C32 AB1 1001 B 1 HETATM 42 C C33 AB1 . . . C 2 11.981 37.247 -7.436 0.5 30.81 ? C33 AB1 1001 B 1 HETATM 43 C C34 AB1 . . . C 2 12.43 36.25 -6.594 0.5 34.53 ? C34 AB1 1001 B 1 HETATM 44 C C35 AB1 . . . C 2 12.958 35.102 -7.23 0.5 29.9 ? C35 AB1 1001 B 1 HETATM 45 C C36 AB1 . . . C 2 11.549 38.298 -2.882 0.5 37.39 ? C36 AB1 1001 B 1 HETATM 46 C C37 AB1 . . . C 2 16.965 32.178 5.84 0.5 35.17 ? C37 AB1 1001 B 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 46 #