data_1RVB # _model_server_result.job_id g4Bfw5Bx34KZsh0nLH3lAQ _model_server_result.datetime_utc '2024-11-12 19:34:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rvb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 1RVB # _exptl.entry_id 1RVB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 96.35 _cell.angle_beta 108.85 _cell.angle_gamma 108.45 _cell.entry_id 1RVB _cell.length_a 49.16 _cell.length_b 50.42 _cell.length_c 64.06 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RVB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OP1 DA 7 D DA 7 1_555 E MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc2 H O HOH . D HOH 16 1_555 E MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc3 D OE2 GLU 44 B GLU 45 1_555 F MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc4 D OD2 ASP 73 B ASP 74 1_555 E MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.054 ? metalc ? metalc5 D OD1 ASP 73 B ASP 74 1_555 E MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.881 ? metalc ? metalc6 D OD1 ASP 73 B ASP 74 1_555 F MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? metalc ? metalc7 D OD1 ASP 89 B ASP 90 1_555 E MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc8 E MG MG . B MG 301 1_555 J O HOH . B HOH 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc9 E MG MG . B MG 301 1_555 J O HOH . B HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc10 F MG MG . B MG 302 1_555 J O HOH . B HOH 349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc11 F MG MG . B MG 302 1_555 J O HOH . B HOH 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? hydrog WATSON-CRICK hydrog1 A N1 DA 2 C DA 2 1_555 B N3 DT 11 D DT 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N6 DA 2 C DA 2 1_555 B O4 DT 11 D DT 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N1 DA 3 C DA 3 1_555 B N3 DT 10 D DT 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N6 DA 3 C DA 3 1_555 B O4 DT 10 D DT 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N1 DG 4 C DG 4 1_555 B N3 DC 9 D DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N2 DG 4 C DG 4 1_555 B O2 DC 9 D DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A O6 DG 4 C DG 4 1_555 B N4 DC 9 D DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N1 DA 5 C DA 5 1_555 B N3 DT 8 D DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N6 DA 5 C DA 5 1_555 B O4 DT 8 D DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N3 DT 6 C DT 6 1_555 B N1 DA 7 D DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O4 DT 6 C DT 6 1_555 B N6 DA 7 D DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N1 DA 7 C DA 7 1_555 B N3 DT 6 D DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N6 DA 7 C DA 7 1_555 B O4 DT 6 D DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N3 DT 8 C DT 8 1_555 B N1 DA 5 D DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O4 DT 8 C DT 8 1_555 B N6 DA 5 D DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 DC 9 C DC 9 1_555 B N1 DG 4 D DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N4 DC 9 C DC 9 1_555 B O6 DG 4 D DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O2 DC 9 C DC 9 1_555 B N2 DG 4 D DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N3 DT 10 C DT 10 1_555 B N1 DA 3 D DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O4 DT 10 C DT 10 1_555 B N6 DA 3 D DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N3 DT 11 C DT 11 1_555 B N1 DA 2 D DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A O4 DT 11 C DT 11 1_555 B N6 DA 2 D DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1RVB _atom_sites.fract_transf_matrix[1][1] 0.020342 _atom_sites.fract_transf_matrix[1][2] 0.006787 _atom_sites.fract_transf_matrix[1][3] 0.008805 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020908 _atom_sites.fract_transf_matrix[2][3] 0.005103 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016979 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG B 1 301 301 MG MG . F 3 MG B 1 302 302 MG MG . G 4 HOH C 1 16 16 HOH HOH . G 4 HOH C 2 17 17 HOH HOH . G 4 HOH C 3 21 21 HOH HOH . G 4 HOH C 4 54 54 HOH HOH . G 4 HOH C 5 82 82 HOH HOH . G 4 HOH C 6 85 85 HOH HOH . G 4 HOH C 7 95 95 HOH HOH . G 4 HOH C 8 97 97 HOH HOH . G 4 HOH C 9 106 106 HOH HOH . G 4 HOH C 10 127 127 HOH HOH . G 4 HOH C 11 194 194 HOH HOH . G 4 HOH C 12 220 220 HOH HOH . G 4 HOH C 13 282 282 HOH HOH . H 4 HOH D 1 12 2 HOH HOH . H 4 HOH D 2 13 38 HOH HOH . H 4 HOH D 3 14 57 HOH HOH . H 4 HOH D 4 15 62 HOH HOH . H 4 HOH D 5 16 66 HOH HOH . H 4 HOH D 6 17 143 HOH HOH . H 4 HOH D 7 18 151 HOH HOH . H 4 HOH D 8 19 162 HOH HOH . H 4 HOH D 9 20 181 HOH HOH . H 4 HOH D 10 21 197 HOH HOH . H 4 HOH D 11 22 274 HOH HOH . H 4 HOH D 12 23 275 HOH HOH . H 4 HOH D 13 24 280 HOH HOH . I 4 HOH A 1 246 4 HOH HOH . I 4 HOH A 2 247 5 HOH HOH . I 4 HOH A 3 248 8 HOH HOH . I 4 HOH A 4 249 10 HOH HOH . I 4 HOH A 5 250 13 HOH HOH . I 4 HOH A 6 251 14 HOH HOH . I 4 HOH A 7 252 15 HOH HOH . I 4 HOH A 8 253 22 HOH HOH . I 4 HOH A 9 254 25 HOH HOH . I 4 HOH A 10 255 26 HOH HOH . I 4 HOH A 11 256 28 HOH HOH . I 4 HOH A 12 257 29 HOH HOH . I 4 HOH A 13 258 30 HOH HOH . I 4 HOH A 14 259 31 HOH HOH . I 4 HOH A 15 260 34 HOH HOH . I 4 HOH A 16 261 35 HOH HOH . I 4 HOH A 17 262 43 HOH HOH . I 4 HOH A 18 263 45 HOH HOH . I 4 HOH A 19 264 46 HOH HOH . I 4 HOH A 20 265 47 HOH HOH . I 4 HOH A 21 266 48 HOH HOH . I 4 HOH A 22 267 49 HOH HOH . I 4 HOH A 23 268 50 HOH HOH . I 4 HOH A 24 269 51 HOH HOH . I 4 HOH A 25 270 52 HOH HOH . I 4 HOH A 26 271 53 HOH HOH . I 4 HOH A 27 272 55 HOH HOH . I 4 HOH A 28 273 58 HOH HOH . I 4 HOH A 29 274 61 HOH HOH . I 4 HOH A 30 275 64 HOH HOH . I 4 HOH A 31 276 65 HOH HOH . I 4 HOH A 32 277 68 HOH HOH . I 4 HOH A 33 278 69 HOH HOH . I 4 HOH A 34 279 70 HOH HOH . I 4 HOH A 35 280 78 HOH HOH . I 4 HOH A 36 281 79 HOH HOH . I 4 HOH A 37 282 81 HOH HOH . I 4 HOH A 38 283 83 HOH HOH . I 4 HOH A 39 284 84 HOH HOH . I 4 HOH A 40 285 91 HOH HOH . I 4 HOH A 41 286 92 HOH HOH . I 4 HOH A 42 287 93 HOH HOH . I 4 HOH A 43 288 96 HOH HOH . I 4 HOH A 44 289 98 HOH HOH . I 4 HOH A 45 290 99 HOH HOH . I 4 HOH A 46 291 100 HOH HOH . I 4 HOH A 47 292 102 HOH HOH . I 4 HOH A 48 293 103 HOH HOH . I 4 HOH A 49 294 104 HOH HOH . I 4 HOH A 50 295 114 HOH HOH . I 4 HOH A 51 296 117 HOH HOH . I 4 HOH A 52 297 136 HOH HOH . I 4 HOH A 53 298 139 HOH HOH . I 4 HOH A 54 299 140 HOH HOH . I 4 HOH A 55 300 142 HOH HOH . I 4 HOH A 56 301 144 HOH HOH . I 4 HOH A 57 302 146 HOH HOH . I 4 HOH A 58 303 147 HOH HOH . I 4 HOH A 59 304 153 HOH HOH . I 4 HOH A 60 305 155 HOH HOH . I 4 HOH A 61 306 156 HOH HOH . I 4 HOH A 62 307 159 HOH HOH . I 4 HOH A 63 308 174 HOH HOH . I 4 HOH A 64 309 180 HOH HOH . I 4 HOH A 65 310 182 HOH HOH . I 4 HOH A 66 311 196 HOH HOH . I 4 HOH A 67 312 198 HOH HOH . I 4 HOH A 68 313 202 HOH HOH . I 4 HOH A 69 314 205 HOH HOH . I 4 HOH A 70 315 211 HOH HOH . I 4 HOH A 71 316 213 HOH HOH . I 4 HOH A 72 317 215 HOH HOH . I 4 HOH A 73 318 219 HOH HOH . I 4 HOH A 74 319 221 HOH HOH . I 4 HOH A 75 320 224 HOH HOH . I 4 HOH A 76 321 242 HOH HOH . I 4 HOH A 77 322 259 HOH HOH . I 4 HOH A 78 323 267 HOH HOH . I 4 HOH A 79 324 281 HOH HOH . I 4 HOH A 80 325 283 HOH HOH . J 4 HOH B 1 303 1 HOH HOH . J 4 HOH B 2 304 3 HOH HOH . J 4 HOH B 3 305 6 HOH HOH . J 4 HOH B 4 306 7 HOH HOH . J 4 HOH B 5 307 9 HOH HOH . J 4 HOH B 6 308 11 HOH HOH . J 4 HOH B 7 309 12 HOH HOH . J 4 HOH B 8 310 18 HOH HOH . J 4 HOH B 9 311 19 HOH HOH . J 4 HOH B 10 312 20 HOH HOH . J 4 HOH B 11 313 23 HOH HOH . J 4 HOH B 12 314 24 HOH HOH . J 4 HOH B 13 315 27 HOH HOH . J 4 HOH B 14 316 32 HOH HOH . J 4 HOH B 15 317 33 HOH HOH . J 4 HOH B 16 318 36 HOH HOH . J 4 HOH B 17 319 37 HOH HOH . J 4 HOH B 18 320 39 HOH HOH . J 4 HOH B 19 321 40 HOH HOH . J 4 HOH B 20 322 41 HOH HOH . J 4 HOH B 21 323 42 HOH HOH . J 4 HOH B 22 324 44 HOH HOH . J 4 HOH B 23 325 56 HOH HOH . J 4 HOH B 24 326 59 HOH HOH . J 4 HOH B 25 327 60 HOH HOH . J 4 HOH B 26 328 67 HOH HOH . J 4 HOH B 27 329 71 HOH HOH . J 4 HOH B 28 330 72 HOH HOH . J 4 HOH B 29 331 74 HOH HOH . J 4 HOH B 30 332 75 HOH HOH . J 4 HOH B 31 333 76 HOH HOH . J 4 HOH B 32 334 77 HOH HOH . J 4 HOH B 33 335 80 HOH HOH . J 4 HOH B 34 336 87 HOH HOH . J 4 HOH B 35 337 88 HOH HOH . J 4 HOH B 36 338 89 HOH HOH . J 4 HOH B 37 339 94 HOH HOH . J 4 HOH B 38 340 101 HOH HOH . J 4 HOH B 39 341 105 HOH HOH . J 4 HOH B 40 342 107 HOH HOH . J 4 HOH B 41 343 109 HOH HOH . J 4 HOH B 42 344 110 HOH HOH . J 4 HOH B 43 345 111 HOH HOH . J 4 HOH B 44 346 113 HOH HOH . J 4 HOH B 45 347 116 HOH HOH . J 4 HOH B 46 348 119 HOH HOH . J 4 HOH B 47 349 121 HOH HOH . J 4 HOH B 48 350 128 HOH HOH . J 4 HOH B 49 351 129 HOH HOH . J 4 HOH B 50 352 130 HOH HOH . J 4 HOH B 51 353 133 HOH HOH . J 4 HOH B 52 354 135 HOH HOH . J 4 HOH B 53 355 138 HOH HOH . J 4 HOH B 54 356 148 HOH HOH . J 4 HOH B 55 357 149 HOH HOH . J 4 HOH B 56 358 150 HOH HOH . J 4 HOH B 57 359 152 HOH HOH . J 4 HOH B 58 360 164 HOH HOH . J 4 HOH B 59 361 165 HOH HOH . J 4 HOH B 60 362 171 HOH HOH . J 4 HOH B 61 363 172 HOH HOH . J 4 HOH B 62 364 173 HOH HOH . J 4 HOH B 63 365 175 HOH HOH . J 4 HOH B 64 366 190 HOH HOH . J 4 HOH B 65 367 191 HOH HOH . J 4 HOH B 66 368 207 HOH HOH . J 4 HOH B 67 369 208 HOH HOH . J 4 HOH B 68 370 209 HOH HOH . J 4 HOH B 69 371 214 HOH HOH . J 4 HOH B 70 372 218 HOH HOH . J 4 HOH B 71 373 230 HOH HOH . J 4 HOH B 72 374 231 HOH HOH . J 4 HOH B 73 375 244 HOH HOH . J 4 HOH B 74 376 246 HOH HOH . J 4 HOH B 75 377 254 HOH HOH . J 4 HOH B 76 378 256 HOH HOH . J 4 HOH B 77 379 264 HOH HOH . J 4 HOH B 78 380 284 HOH HOH . J 4 HOH B 79 381 285 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x -0.835 _atom_site.Cartn_y 7.59 _atom_site.Cartn_z -7.278 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 41.68 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 302 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #