data_1RVW
#
_model_server_result.job_id            DNK4LdlFG2fighn9iENV_A 
_model_server_result.datetime_utc      '2025-04-24 12:40:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1rvw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    1RVW 
#
_exptl.entry_id    1RVW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1RVW 
_cell.length_a            54.282 
_cell.length_b            54.282 
_cell.length_c            194.122 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1RVW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 54.282 54.282 97.061 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 D FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? 
metalc ? metalc2 D FE HEM . A HEM 201 1_555 E C CMO . A CMO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? 
metalc ? metalc3 B NE2 HIS 92 B HIS 92 1_555 F FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc4 F FE HEM . B HEM 201 1_555 G C CMO . B CMO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 130 n n 
CHA C4D HEM doub 131 n n 
CHA HHA HEM sing 132 n n 
CHB C4A HEM sing 133 n n 
CHB C1B HEM doub 134 n n 
CHB HHB HEM sing 135 n n 
CHC C4B HEM sing 136 n n 
CHC C1C HEM doub 137 n n 
CHC HHC HEM sing 138 n n 
CHD C4C HEM doub 139 n n 
CHD C1D HEM sing 140 n n 
CHD HHD HEM sing 141 n n 
C1A C2A HEM doub 142 n y 
C1A NA HEM sing 143 n y 
C2A C3A HEM sing 144 n y 
C2A CAA HEM sing 145 n n 
C3A C4A HEM doub 146 n y 
C3A CMA HEM sing 147 n n 
C4A NA HEM sing 148 n y 
CMA HMA HEM sing 149 n n 
CMA HMAA HEM sing 150 n n 
CMA HMAB HEM sing 151 n n 
CAA CBA HEM sing 152 n n 
CAA HAA HEM sing 153 n n 
CAA HAAA HEM sing 154 n n 
CBA CGA HEM sing 155 n n 
CBA HBA HEM sing 156 n n 
CBA HBAA HEM sing 157 n n 
CGA O1A HEM doub 158 n n 
CGA O2A HEM sing 159 n n 
C1B C2B HEM sing 160 n n 
C1B NB HEM sing 161 n n 
C2B C3B HEM doub 162 n n 
C2B CMB HEM sing 163 n n 
C3B C4B HEM sing 164 n n 
C3B CAB HEM sing 165 n n 
C4B NB HEM doub 166 n n 
CMB HMB HEM sing 167 n n 
CMB HMBA HEM sing 168 n n 
CMB HMBB HEM sing 169 n n 
CAB CBB HEM doub 170 n n 
CAB HAB HEM sing 171 n n 
CBB HBB HEM sing 172 n n 
CBB HBBA HEM sing 173 n n 
C1C C2C HEM sing 174 n y 
C1C NC HEM sing 175 n y 
C2C C3C HEM doub 176 n y 
C2C CMC HEM sing 177 n n 
C3C C4C HEM sing 178 n y 
C3C CAC HEM sing 179 n n 
C4C NC HEM sing 180 n y 
CMC HMC HEM sing 181 n n 
CMC HMCA HEM sing 182 n n 
CMC HMCB HEM sing 183 n n 
CAC CBC HEM doub 184 n n 
CAC HAC HEM sing 185 n n 
CBC HBC HEM sing 186 n n 
CBC HBCA HEM sing 187 n n 
C1D C2D HEM sing 188 n n 
C1D ND HEM doub 189 n n 
C2D C3D HEM doub 190 n n 
C2D CMD HEM sing 191 n n 
C3D C4D HEM sing 192 n n 
C3D CAD HEM sing 193 n n 
C4D ND HEM sing 194 n n 
CMD HMD HEM sing 195 n n 
CMD HMDA HEM sing 196 n n 
CMD HMDB HEM sing 197 n n 
CAD CBD HEM sing 198 n n 
CAD HAD HEM sing 199 n n 
CAD HADA HEM sing 200 n n 
CBD CGD HEM sing 201 n n 
CBD HBD HEM sing 202 n n 
CBD HBDA HEM sing 203 n n 
CGD O1D HEM doub 204 n n 
CGD O2D HEM sing 205 n n 
O2A H2A HEM sing 206 n n 
O2D H2D HEM sing 207 n n 
FE NA HEM sing 208 n n 
FE NB HEM sing 209 n n 
FE NC HEM sing 210 n n 
FE ND HEM sing 211 n n 
#
_atom_sites.entry_id                     1RVW 
_atom_sites.fract_transf_matrix[1][1]    0.018422 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018422 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005151 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 PO4 A 1 142 1 PO4 PO4 . 
D 4 HEM A 1 201 201 HEM HEM . 
E 5 CMO A 1 202 202 CMO CMO . 
F 4 HEM B 1 201 201 HEM HEM . 
G 5 CMO B 1 202 202 CMO CMO . 
H 6 HOH A 1 203 1 HOH HOH . 
H 6 HOH A 2 204 2 HOH HOH . 
H 6 HOH A 3 205 4 HOH HOH . 
H 6 HOH A 4 206 7 HOH HOH . 
H 6 HOH A 5 207 8 HOH HOH . 
H 6 HOH A 6 208 9 HOH HOH . 
H 6 HOH A 7 209 10 HOH HOH . 
H 6 HOH A 8 210 15 HOH HOH . 
H 6 HOH A 9 211 16 HOH HOH . 
H 6 HOH A 10 212 17 HOH HOH . 
H 6 HOH A 11 213 18 HOH HOH . 
H 6 HOH A 12 214 20 HOH HOH . 
H 6 HOH A 13 215 21 HOH HOH . 
H 6 HOH A 14 216 22 HOH HOH . 
I 6 HOH B 1 203 3 HOH HOH . 
I 6 HOH B 2 204 5 HOH HOH . 
I 6 HOH B 3 205 6 HOH HOH . 
I 6 HOH B 4 206 11 HOH HOH . 
I 6 HOH B 5 207 12 HOH HOH . 
I 6 HOH B 6 208 13 HOH HOH . 
I 6 HOH B 7 209 14 HOH HOH . 
I 6 HOH B 8 210 19 HOH HOH . 
I 6 HOH B 9 211 23 HOH HOH . 
I 6 HOH B 10 212 24 HOH HOH . 
I 6 HOH B 11 213 25 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . D 4 16.427 52.746 31.575 1 21.93 ? CHA HEM 201 A 1 
HETATM 2 C CHB HEM . . . D 4 14.297 48.494 32.215 1 16.73 ? CHB HEM 201 A 1 
HETATM 3 C CHC HEM . . . D 4 11.231 50.632 35.235 1 14.66 ? CHC HEM 201 A 1 
HETATM 4 C CHD HEM . . . D 4 12.815 54.959 33.876 1 17.27 ? CHD HEM 201 A 1 
HETATM 5 C C1A HEM . . . D 4 16.114 51.382 31.449 1 23.56 ? C1A HEM 201 A 1 
HETATM 6 C C2A HEM . . . D 4 16.703 50.41 30.523 1 25.01 ? C2A HEM 201 A 1 
HETATM 7 C C3A HEM . . . D 4 16.124 49.21 30.749 1 23.24 ? C3A HEM 201 A 1 
HETATM 8 C C4A HEM . . . D 4 15.15 49.46 31.764 1 19.49 ? C4A HEM 201 A 1 
HETATM 9 C CMA HEM . . . D 4 16.376 47.851 30.084 1 13.99 ? CMA HEM 201 A 1 
HETATM 10 C CAA HEM . . . D 4 17.745 50.697 29.456 1 26.13 ? CAA HEM 201 A 1 
HETATM 11 C CBA HEM . . . D 4 19.005 51.1 30.19 1 36.6 ? CBA HEM 201 A 1 
HETATM 12 C CGA HEM . . . D 4 20.273 50.767 29.426 1 41.04 ? CGA HEM 201 A 1 
HETATM 13 O O1A HEM . . . D 4 21.199 50.174 30.03 1 39.74 ? O1A HEM 201 A 1 
HETATM 14 O O2A HEM . . . D 4 20.343 51.106 28.225 1 44.73 ? O2A HEM 201 A 1 
HETATM 15 C C1B HEM . . . D 4 13.258 48.701 33.061 1 15.96 ? C1B HEM 201 A 1 
HETATM 16 C C2B HEM . . . D 4 12.508 47.621 33.649 1 19.9 ? C2B HEM 201 A 1 
HETATM 17 C C3B HEM . . . D 4 11.696 48.216 34.586 1 23.97 ? C3B HEM 201 A 1 
HETATM 18 C C4B HEM . . . D 4 11.951 49.658 34.538 1 16.42 ? C4B HEM 201 A 1 
HETATM 19 C CMB HEM . . . D 4 12.712 46.144 33.321 1 12.34 ? CMB HEM 201 A 1 
HETATM 20 C CAB HEM . . . D 4 10.84 47.594 35.483 1 24.82 ? CAB HEM 201 A 1 
HETATM 21 C CBB HEM . . . D 4 9.729 46.835 35.025 1 24.33 ? CBB HEM 201 A 1 
HETATM 22 C C1C HEM . . . D 4 11.353 52.014 35.078 1 20.64 ? C1C HEM 201 A 1 
HETATM 23 C C2C HEM . . . D 4 10.546 53.021 35.743 1 21.98 ? C2C HEM 201 A 1 
HETATM 24 C C3C HEM . . . D 4 11.002 54.215 35.291 1 23.94 ? C3C HEM 201 A 1 
HETATM 25 C C4C HEM . . . D 4 12.058 53.955 34.39 1 18.81 ? C4C HEM 201 A 1 
HETATM 26 C CMC HEM . . . D 4 9.446 52.798 36.774 1 24.21 ? CMC HEM 201 A 1 
HETATM 27 C CAC HEM . . . D 4 10.584 55.498 35.614 1 27.62 ? CAC HEM 201 A 1 
HETATM 28 C CBC HEM . . . D 4 9.249 55.975 35.312 1 30.66 ? CBC HEM 201 A 1 
HETATM 29 C C1D HEM . . . D 4 13.954 54.749 33.174 1 25.1 ? C1D HEM 201 A 1 
HETATM 30 C C2D HEM . . . D 4 14.783 55.833 32.693 1 23.82 ? C2D HEM 201 A 1 
HETATM 31 C C3D HEM . . . D 4 15.823 55.197 32.119 1 22.96 ? C3D HEM 201 A 1 
HETATM 32 C C4D HEM . . . D 4 15.664 53.734 32.23 1 27.49 ? C4D HEM 201 A 1 
HETATM 33 C CMD HEM . . . D 4 14.464 57.333 32.674 1 19.38 ? CMD HEM 201 A 1 
HETATM 34 C CAD HEM . . . D 4 16.855 55.898 31.296 1 23.8 ? CAD HEM 201 A 1 
HETATM 35 C CBD HEM . . . D 4 16.332 56.17 29.895 1 27.48 ? CBD HEM 201 A 1 
HETATM 36 C CGD HEM . . . D 4 17.408 56.727 28.991 1 25.24 ? CGD HEM 201 A 1 
HETATM 37 O O1D HEM . . . D 4 18.267 55.947 28.544 1 30.79 ? O1D HEM 201 A 1 
HETATM 38 O O2D HEM . . . D 4 17.406 57.946 28.735 1 32.75 ? O2D HEM 201 A 1 
HETATM 39 N NA HEM . . . D 4 15.085 50.787 32.122 1 24.14 ? NA HEM 201 A 1 
HETATM 40 N NB HEM . . . D 4 12.925 49.932 33.594 1 20.22 ? NB HEM 201 A 1 
HETATM 41 N NC HEM . . . D 4 12.283 52.609 34.238 1 22.12 ? NC HEM 201 A 1 
HETATM 42 N ND HEM . . . D 4 14.473 53.473 32.862 1 29.29 ? ND HEM 201 A 1 
HETATM 43 FE FE HEM . . . D 4 13.645 51.694 33.087 1 20.82 ? FE HEM 201 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           337 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#