data_1RVW # _model_server_result.job_id '_vwSquRGfI9OBlkumxnCUA' _model_server_result.datetime_utc '2024-11-17 17:44:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rvw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 1RVW # _exptl.entry_id 1RVW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RVW _cell.length_a 54.282 _cell.length_b 54.282 _cell.length_c 194.122 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RVW _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 54.282 54.282 97.061 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 99 A LYS 99 1_555 C O2 PO4 . A PO4 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.79 ? covale ? covale2 A NZ LYS 99 A LYS 99 8_665 C O4 PO4 . A PO4 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.75 ? metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 D FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc2 D FE HEM . A HEM 201 1_555 E C CMO . A CMO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc3 B NE2 HIS 92 B HIS 92 1_555 F FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc4 F FE HEM . B HEM 201 1_555 G C CMO . B CMO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # _atom_sites.entry_id 1RVW _atom_sites.fract_transf_matrix[1][1] 0.018422 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018422 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005151 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 A 1 142 1 PO4 PO4 . D 4 HEM A 1 201 201 HEM HEM . E 5 CMO A 1 202 202 CMO CMO . F 4 HEM B 1 201 201 HEM HEM . G 5 CMO B 1 202 202 CMO CMO . H 6 HOH A 1 203 1 HOH HOH . H 6 HOH A 2 204 2 HOH HOH . H 6 HOH A 3 205 4 HOH HOH . H 6 HOH A 4 206 7 HOH HOH . H 6 HOH A 5 207 8 HOH HOH . H 6 HOH A 6 208 9 HOH HOH . H 6 HOH A 7 209 10 HOH HOH . H 6 HOH A 8 210 15 HOH HOH . H 6 HOH A 9 211 16 HOH HOH . H 6 HOH A 10 212 17 HOH HOH . H 6 HOH A 11 213 18 HOH HOH . H 6 HOH A 12 214 20 HOH HOH . H 6 HOH A 13 215 21 HOH HOH . H 6 HOH A 14 216 22 HOH HOH . I 6 HOH B 1 203 3 HOH HOH . I 6 HOH B 2 204 5 HOH HOH . I 6 HOH B 3 205 6 HOH HOH . I 6 HOH B 4 206 11 HOH HOH . I 6 HOH B 5 207 12 HOH HOH . I 6 HOH B 6 208 13 HOH HOH . I 6 HOH B 7 209 14 HOH HOH . I 6 HOH B 8 210 19 HOH HOH . I 6 HOH B 9 211 23 HOH HOH . I 6 HOH B 10 212 24 HOH HOH . I 6 HOH B 11 213 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . D 4 16.427 52.746 31.575 1 21.93 ? CHA HEM 201 A 1 HETATM 2 C CHB HEM . . . D 4 14.297 48.494 32.215 1 16.73 ? CHB HEM 201 A 1 HETATM 3 C CHC HEM . . . D 4 11.231 50.632 35.235 1 14.66 ? CHC HEM 201 A 1 HETATM 4 C CHD HEM . . . D 4 12.815 54.959 33.876 1 17.27 ? CHD HEM 201 A 1 HETATM 5 C C1A HEM . . . D 4 16.114 51.382 31.449 1 23.56 ? C1A HEM 201 A 1 HETATM 6 C C2A HEM . . . D 4 16.703 50.41 30.523 1 25.01 ? C2A HEM 201 A 1 HETATM 7 C C3A HEM . . . D 4 16.124 49.21 30.749 1 23.24 ? C3A HEM 201 A 1 HETATM 8 C C4A HEM . . . D 4 15.15 49.46 31.764 1 19.49 ? C4A HEM 201 A 1 HETATM 9 C CMA HEM . . . D 4 16.376 47.851 30.084 1 13.99 ? CMA HEM 201 A 1 HETATM 10 C CAA HEM . . . D 4 17.745 50.697 29.456 1 26.13 ? CAA HEM 201 A 1 HETATM 11 C CBA HEM . . . D 4 19.005 51.1 30.19 1 36.6 ? CBA HEM 201 A 1 HETATM 12 C CGA HEM . . . D 4 20.273 50.767 29.426 1 41.04 ? CGA HEM 201 A 1 HETATM 13 O O1A HEM . . . D 4 21.199 50.174 30.03 1 39.74 ? O1A HEM 201 A 1 HETATM 14 O O2A HEM . . . D 4 20.343 51.106 28.225 1 44.73 ? O2A HEM 201 A 1 HETATM 15 C C1B HEM . . . D 4 13.258 48.701 33.061 1 15.96 ? C1B HEM 201 A 1 HETATM 16 C C2B HEM . . . D 4 12.508 47.621 33.649 1 19.9 ? C2B HEM 201 A 1 HETATM 17 C C3B HEM . . . D 4 11.696 48.216 34.586 1 23.97 ? C3B HEM 201 A 1 HETATM 18 C C4B HEM . . . D 4 11.951 49.658 34.538 1 16.42 ? C4B HEM 201 A 1 HETATM 19 C CMB HEM . . . D 4 12.712 46.144 33.321 1 12.34 ? CMB HEM 201 A 1 HETATM 20 C CAB HEM . . . D 4 10.84 47.594 35.483 1 24.82 ? CAB HEM 201 A 1 HETATM 21 C CBB HEM . . . D 4 9.729 46.835 35.025 1 24.33 ? CBB HEM 201 A 1 HETATM 22 C C1C HEM . . . D 4 11.353 52.014 35.078 1 20.64 ? C1C HEM 201 A 1 HETATM 23 C C2C HEM . . . D 4 10.546 53.021 35.743 1 21.98 ? C2C HEM 201 A 1 HETATM 24 C C3C HEM . . . D 4 11.002 54.215 35.291 1 23.94 ? C3C HEM 201 A 1 HETATM 25 C C4C HEM . . . D 4 12.058 53.955 34.39 1 18.81 ? C4C HEM 201 A 1 HETATM 26 C CMC HEM . . . D 4 9.446 52.798 36.774 1 24.21 ? CMC HEM 201 A 1 HETATM 27 C CAC HEM . . . D 4 10.584 55.498 35.614 1 27.62 ? CAC HEM 201 A 1 HETATM 28 C CBC HEM . . . D 4 9.249 55.975 35.312 1 30.66 ? CBC HEM 201 A 1 HETATM 29 C C1D HEM . . . D 4 13.954 54.749 33.174 1 25.1 ? C1D HEM 201 A 1 HETATM 30 C C2D HEM . . . D 4 14.783 55.833 32.693 1 23.82 ? C2D HEM 201 A 1 HETATM 31 C C3D HEM . . . D 4 15.823 55.197 32.119 1 22.96 ? C3D HEM 201 A 1 HETATM 32 C C4D HEM . . . D 4 15.664 53.734 32.23 1 27.49 ? C4D HEM 201 A 1 HETATM 33 C CMD HEM . . . D 4 14.464 57.333 32.674 1 19.38 ? CMD HEM 201 A 1 HETATM 34 C CAD HEM . . . D 4 16.855 55.898 31.296 1 23.8 ? CAD HEM 201 A 1 HETATM 35 C CBD HEM . . . D 4 16.332 56.17 29.895 1 27.48 ? CBD HEM 201 A 1 HETATM 36 C CGD HEM . . . D 4 17.408 56.727 28.991 1 25.24 ? CGD HEM 201 A 1 HETATM 37 O O1D HEM . . . D 4 18.267 55.947 28.544 1 30.79 ? O1D HEM 201 A 1 HETATM 38 O O2D HEM . . . D 4 17.406 57.946 28.735 1 32.75 ? O2D HEM 201 A 1 HETATM 39 N NA HEM . . . D 4 15.085 50.787 32.122 1 24.14 ? NA HEM 201 A 1 HETATM 40 N NB HEM . . . D 4 12.925 49.932 33.594 1 20.22 ? NB HEM 201 A 1 HETATM 41 N NC HEM . . . D 4 12.283 52.609 34.238 1 22.12 ? NC HEM 201 A 1 HETATM 42 N ND HEM . . . D 4 14.473 53.473 32.862 1 29.29 ? ND HEM 201 A 1 HETATM 43 FE FE HEM . . . D 4 13.645 51.694 33.087 1 20.82 ? FE HEM 201 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #