data_1RVW # _model_server_result.job_id q208a3zAa7_B1cAMk58i7A _model_server_result.datetime_utc '2024-11-17 17:48:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rvw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 1RVW # _exptl.entry_id 1RVW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RVW _cell.length_a 54.282 _cell.length_b 54.282 _cell.length_c 194.122 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RVW _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 54.282 54.282 97.061 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 99 A LYS 99 1_555 C O2 PO4 . A PO4 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.79 ? covale ? covale2 A NZ LYS 99 A LYS 99 8_665 C O4 PO4 . A PO4 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.75 ? metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 D FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc2 D FE HEM . A HEM 201 1_555 E C CMO . A CMO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc3 B NE2 HIS 92 B HIS 92 1_555 F FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc4 F FE HEM . B HEM 201 1_555 G C CMO . B CMO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # _atom_sites.entry_id 1RVW _atom_sites.fract_transf_matrix[1][1] 0.018422 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018422 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005151 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 A 1 142 1 PO4 PO4 . D 4 HEM A 1 201 201 HEM HEM . E 5 CMO A 1 202 202 CMO CMO . F 4 HEM B 1 201 201 HEM HEM . G 5 CMO B 1 202 202 CMO CMO . H 6 HOH A 1 203 1 HOH HOH . H 6 HOH A 2 204 2 HOH HOH . H 6 HOH A 3 205 4 HOH HOH . H 6 HOH A 4 206 7 HOH HOH . H 6 HOH A 5 207 8 HOH HOH . H 6 HOH A 6 208 9 HOH HOH . H 6 HOH A 7 209 10 HOH HOH . H 6 HOH A 8 210 15 HOH HOH . H 6 HOH A 9 211 16 HOH HOH . H 6 HOH A 10 212 17 HOH HOH . H 6 HOH A 11 213 18 HOH HOH . H 6 HOH A 12 214 20 HOH HOH . H 6 HOH A 13 215 21 HOH HOH . H 6 HOH A 14 216 22 HOH HOH . I 6 HOH B 1 203 3 HOH HOH . I 6 HOH B 2 204 5 HOH HOH . I 6 HOH B 3 205 6 HOH HOH . I 6 HOH B 4 206 11 HOH HOH . I 6 HOH B 5 207 12 HOH HOH . I 6 HOH B 6 208 13 HOH HOH . I 6 HOH B 7 209 14 HOH HOH . I 6 HOH B 8 210 19 HOH HOH . I 6 HOH B 9 211 23 HOH HOH . I 6 HOH B 10 212 24 HOH HOH . I 6 HOH B 11 213 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . F 4 -20.107 46.08 50.08 1 36.57 ? CHA HEM 201 B 1 HETATM 2 C CHB HEM . . . F 4 -19.085 49.004 46.364 1 32.83 ? CHB HEM 201 B 1 HETATM 3 C CHC HEM . . . F 4 -14.409 48.524 47.351 1 29.91 ? CHC HEM 201 B 1 HETATM 4 C CHD HEM . . . F 4 -15.391 45.241 50.787 1 45.97 ? CHD HEM 201 B 1 HETATM 5 C C1A HEM . . . F 4 -20.226 46.974 49.027 1 35.87 ? C1A HEM 201 B 1 HETATM 6 C C2A HEM . . . F 4 -21.453 47.306 48.366 1 36.8 ? C2A HEM 201 B 1 HETATM 7 C C3A HEM . . . F 4 -21.164 48.114 47.314 1 28.96 ? C3A HEM 201 B 1 HETATM 8 C C4A HEM . . . F 4 -19.758 48.272 47.328 1 32.82 ? C4A HEM 201 B 1 HETATM 9 C CMA HEM . . . F 4 -22.053 48.656 46.216 1 22.52 ? CMA HEM 201 B 1 HETATM 10 C CAA HEM . . . F 4 -22.794 46.771 48.8 1 35.25 ? CAA HEM 201 B 1 HETATM 11 C CBA HEM . . . F 4 -23.346 47.74 49.821 1 42.58 ? CBA HEM 201 B 1 HETATM 12 C CGA HEM . . . F 4 -24.83 47.579 50.003 1 42.63 ? CGA HEM 201 B 1 HETATM 13 O O1A HEM . . . F 4 -25.544 48.605 50.047 1 39.81 ? O1A HEM 201 B 1 HETATM 14 O O2A HEM . . . F 4 -25.279 46.419 50.099 1 45.5 ? O2A HEM 201 B 1 HETATM 15 C C1B HEM . . . F 4 -17.731 49.11 46.313 1 29.99 ? C1B HEM 201 B 1 HETATM 16 C C2B HEM . . . F 4 -17.039 49.97 45.392 1 31.94 ? C2B HEM 201 B 1 HETATM 17 C C3B HEM . . . F 4 -15.706 49.901 45.67 1 29.56 ? C3B HEM 201 B 1 HETATM 18 C C4B HEM . . . F 4 -15.605 48.975 46.815 1 27.71 ? C4B HEM 201 B 1 HETATM 19 C CMB HEM . . . F 4 -17.7 50.846 44.357 1 30.2 ? CMB HEM 201 B 1 HETATM 20 C CAB HEM . . . F 4 -14.707 50.645 45.036 1 22.69 ? CAB HEM 201 B 1 HETATM 21 C CBB HEM . . . F 4 -13.402 50.157 44.599 1 16.97 ? CBB HEM 201 B 1 HETATM 22 C C1C HEM . . . F 4 -14.244 47.536 48.337 1 36.99 ? C1C HEM 201 B 1 HETATM 23 C C2C HEM . . . F 4 -12.961 46.965 48.77 1 32.92 ? C2C HEM 201 B 1 HETATM 24 C C3C HEM . . . F 4 -13.237 46.087 49.748 1 36.98 ? C3C HEM 201 B 1 HETATM 25 C C4C HEM . . . F 4 -14.686 46.043 49.889 1 41.31 ? C4C HEM 201 B 1 HETATM 26 C CMC HEM . . . F 4 -11.58 47.262 48.213 1 30.56 ? CMC HEM 201 B 1 HETATM 27 C CAC HEM . . . F 4 -12.298 45.486 50.564 1 41.32 ? CAC HEM 201 B 1 HETATM 28 C CBC HEM . . . F 4 -12.146 44.047 50.694 1 38.56 ? CBC HEM 201 B 1 HETATM 29 C C1D HEM . . . F 4 -16.789 45.195 50.914 1 41.59 ? C1D HEM 201 B 1 HETATM 30 C C2D HEM . . . F 4 -17.486 44.283 51.793 1 39.33 ? C2D HEM 201 B 1 HETATM 31 C C3D HEM . . . F 4 -18.799 44.523 51.58 1 39.53 ? C3D HEM 201 B 1 HETATM 32 C C4D HEM . . . F 4 -18.922 45.57 50.591 1 39.88 ? C4D HEM 201 B 1 HETATM 33 C CMD HEM . . . F 4 -16.882 43.194 52.697 1 28.88 ? CMD HEM 201 B 1 HETATM 34 C CAD HEM . . . F 4 -19.892 43.673 52.17 1 43.38 ? CAD HEM 201 B 1 HETATM 35 C CBD HEM . . . F 4 -20.945 44.369 53.001 1 54.88 ? CBD HEM 201 B 1 HETATM 36 C CGD HEM . . . F 4 -22.337 43.822 52.727 1 64.51 ? CGD HEM 201 B 1 HETATM 37 O O1D HEM . . . F 4 -22.658 42.723 53.236 1 63.8 ? O1D HEM 201 B 1 HETATM 38 O O2D HEM . . . F 4 -23.108 44.489 51.999 1 68.6 ? O2D HEM 201 B 1 HETATM 39 N NA HEM . . . F 4 -19.172 47.532 48.354 1 38.17 ? NA HEM 201 B 1 HETATM 40 N NB HEM . . . F 4 -16.857 48.495 47.208 1 31.41 ? NB HEM 201 B 1 HETATM 41 N NC HEM . . . F 4 -15.309 46.926 49.008 1 42.11 ? NC HEM 201 B 1 HETATM 42 N ND HEM . . . F 4 -17.68 45.95 50.152 1 40.82 ? ND HEM 201 B 1 HETATM 43 FE FE HEM . . . F 4 -17.266 47.181 48.675 1 33.66 ? FE HEM 201 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #