data_1RVY
#
_model_server_result.job_id            T2zs2WkbCvfPyPuEOMBxuQ 
_model_server_result.datetime_utc      '2024-11-25 04:43:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1rvy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    1RVY 
#
_exptl.entry_id    1RVY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1RVY 
_cell.length_a            114.7 
_cell.length_b            114.7 
_cell.length_c            156.37 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1RVY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 156.37 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 256 A LYS 257 1_555 C C4A PLG . A PLG 500 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.479 ? 
covale ? covale2 B NZ LYS 256 B LYS 257 1_555 E C4A PLP . B PLP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.478 ? 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 321 n n 
P O2 PO4 sing 322 n n 
P O3 PO4 sing 323 n n 
P O4 PO4 sing 324 n n 
#
_atom_sites.entry_id                     1RVY 
_atom_sites.fract_transf_matrix[1][1]    0.008718 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008718 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006395 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PLG A 1 500 500 PLG PLH . 
D 3 PO4 B 1 601 601 PO4 PO4 . 
E 4 PLP B 1 600 600 PLP PLP . 
F 5 HOH A 1 511 511 HOH HOH . 
F 5 HOH A 2 512 512 HOH HOH . 
F 5 HOH A 3 513 513 HOH HOH . 
F 5 HOH A 4 514 514 HOH HOH . 
F 5 HOH A 5 515 515 HOH HOH . 
F 5 HOH A 6 516 516 HOH HOH . 
F 5 HOH A 7 517 517 HOH HOH . 
F 5 HOH A 8 518 518 HOH HOH . 
F 5 HOH A 9 519 519 HOH HOH . 
F 5 HOH A 10 520 520 HOH HOH . 
F 5 HOH A 11 521 521 HOH HOH . 
F 5 HOH A 12 522 522 HOH HOH . 
F 5 HOH A 13 523 523 HOH HOH . 
F 5 HOH A 14 524 524 HOH HOH . 
F 5 HOH A 15 526 526 HOH HOH . 
F 5 HOH A 16 527 527 HOH HOH . 
F 5 HOH A 17 528 528 HOH HOH . 
F 5 HOH A 18 529 529 HOH HOH . 
F 5 HOH A 19 530 530 HOH HOH . 
F 5 HOH A 20 531 531 HOH HOH . 
F 5 HOH A 21 532 532 HOH HOH . 
F 5 HOH A 22 533 533 HOH HOH . 
F 5 HOH A 23 534 534 HOH HOH . 
F 5 HOH A 24 535 535 HOH HOH . 
F 5 HOH A 25 536 536 HOH HOH . 
F 5 HOH A 26 537 537 HOH HOH . 
F 5 HOH A 27 538 538 HOH HOH . 
F 5 HOH A 28 539 539 HOH HOH . 
F 5 HOH A 29 541 541 HOH HOH . 
F 5 HOH A 30 542 542 HOH HOH . 
F 5 HOH A 31 543 543 HOH HOH . 
F 5 HOH A 32 544 544 HOH HOH . 
F 5 HOH A 33 545 545 HOH HOH . 
F 5 HOH A 34 546 546 HOH HOH . 
F 5 HOH A 35 547 547 HOH HOH . 
F 5 HOH A 36 548 548 HOH HOH . 
F 5 HOH A 37 549 549 HOH HOH . 
F 5 HOH A 38 550 550 HOH HOH . 
F 5 HOH A 39 551 551 HOH HOH . 
F 5 HOH A 40 552 552 HOH HOH . 
F 5 HOH A 41 553 553 HOH HOH . 
F 5 HOH A 42 560 560 HOH HOH . 
F 5 HOH A 43 561 561 HOH HOH . 
F 5 HOH A 44 562 562 HOH HOH . 
F 5 HOH A 45 564 564 HOH HOH . 
F 5 HOH A 46 613 613 HOH HOH . 
F 5 HOH A 47 625 625 HOH HOH . 
F 5 HOH A 48 640 640 HOH HOH . 
F 5 HOH A 49 651 651 HOH HOH . 
F 5 HOH A 50 655 655 HOH HOH . 
F 5 HOH A 51 657 657 HOH HOH . 
F 5 HOH A 52 663 663 HOH HOH . 
G 5 HOH B 1 525 525 HOH HOH . 
G 5 HOH B 2 540 540 HOH HOH . 
G 5 HOH B 3 556 556 HOH HOH . 
G 5 HOH B 4 557 557 HOH HOH . 
G 5 HOH B 5 611 611 HOH HOH . 
G 5 HOH B 6 612 612 HOH HOH . 
G 5 HOH B 7 614 614 HOH HOH . 
G 5 HOH B 8 615 615 HOH HOH . 
G 5 HOH B 9 616 616 HOH HOH . 
G 5 HOH B 10 617 617 HOH HOH . 
G 5 HOH B 11 618 618 HOH HOH . 
G 5 HOH B 12 619 619 HOH HOH . 
G 5 HOH B 13 620 620 HOH HOH . 
G 5 HOH B 14 621 621 HOH HOH . 
G 5 HOH B 15 622 622 HOH HOH . 
G 5 HOH B 16 623 623 HOH HOH . 
G 5 HOH B 17 624 624 HOH HOH . 
G 5 HOH B 18 626 626 HOH HOH . 
G 5 HOH B 19 627 627 HOH HOH . 
G 5 HOH B 20 628 628 HOH HOH . 
G 5 HOH B 21 629 629 HOH HOH . 
G 5 HOH B 22 630 630 HOH HOH . 
G 5 HOH B 23 631 631 HOH HOH . 
G 5 HOH B 24 632 632 HOH HOH . 
G 5 HOH B 25 633 633 HOH HOH . 
G 5 HOH B 26 634 634 HOH HOH . 
G 5 HOH B 27 635 635 HOH HOH . 
G 5 HOH B 28 636 636 HOH HOH . 
G 5 HOH B 29 637 637 HOH HOH . 
G 5 HOH B 30 638 638 HOH HOH . 
G 5 HOH B 31 639 639 HOH HOH . 
G 5 HOH B 32 641 641 HOH HOH . 
G 5 HOH B 33 642 642 HOH HOH . 
G 5 HOH B 34 643 643 HOH HOH . 
G 5 HOH B 35 644 644 HOH HOH . 
G 5 HOH B 36 645 645 HOH HOH . 
G 5 HOH B 37 646 646 HOH HOH . 
G 5 HOH B 38 647 647 HOH HOH . 
G 5 HOH B 39 648 648 HOH HOH . 
G 5 HOH B 40 649 649 HOH HOH . 
G 5 HOH B 41 650 650 HOH HOH . 
G 5 HOH B 42 652 652 HOH HOH . 
G 5 HOH B 43 653 653 HOH HOH . 
G 5 HOH B 44 654 654 HOH HOH . 
G 5 HOH B 45 656 656 HOH HOH . 
G 5 HOH B 46 658 658 HOH HOH . 
G 5 HOH B 47 659 659 HOH HOH . 
G 5 HOH B 48 660 660 HOH HOH . 
G 5 HOH B 49 661 661 HOH HOH . 
G 5 HOH B 50 694 694 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . D 3 31.305 61.07 63.376 1 71.45 ? P PO4 601 B 1 
HETATM 2 O O1 PO4 . . . D 3 30.566 60.655 64.592 1 70.04 ? O1 PO4 601 B 1 
HETATM 3 O O2 PO4 . . . D 3 30.553 60.632 62.176 1 69.44 ? O2 PO4 601 B 1 
HETATM 4 O O3 PO4 . . . D 3 32.655 60.446 63.377 1 70.72 ? O3 PO4 601 B 1 
HETATM 5 O O4 PO4 . . . D 3 31.444 62.547 63.358 1 71.82 ? O4 PO4 601 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           5 
#