data_1RWJ # _model_server_result.job_id kb23N8aDjknw2DAn0iDR7w _model_server_result.datetime_utc '2025-02-20 10:59:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rwj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":92}' # _entry.id 1RWJ # _exptl.entry_id 1RWJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RWJ _cell.length_a 43.8 _cell.length_b 43.8 _cell.length_c 123.8 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RWJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 32 A CYS 32 1_555 B CAB HEC . A HEC 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? covale ? covale2 A SG CYS 35 A CYS 35 1_555 B CAC HEC . A HEC 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.817 ? covale ? covale3 A SG CYS 60 A CYS 60 1_555 C CAB HEC . A HEC 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.811 ? covale ? covale4 A SG CYS 63 A CYS 63 1_555 C CAC HEC . A HEC 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.809 ? covale ? covale5 A SG CYS 76 A CYS 76 1_555 D CAB HEC . A HEC 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.807 ? covale ? covale6 A SG CYS 79 A CYS 79 1_555 D CAC HEC . A HEC 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.817 ? metalc ? metalc1 A NE2 HIS 23 A HIS 23 1_555 B FE HEC . A HEC 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc2 A NE2 HIS 26 A HIS 26 1_555 C FE HEC . A HEC 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc3 A NE2 HIS 36 A HIS 36 1_555 B FE HEC . A HEC 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc4 A SD MET 51 A MET 51 1_555 D FE HEC . A HEC 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc5 A NE2 HIS 64 A HIS 64 1_555 C FE HEC . A HEC 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc6 A NE2 HIS 80 A HIS 80 1_555 D FE HEC . A HEC 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 110 n n FE NB HEC sing 111 n n FE NC HEC sing 112 n n FE ND HEC sing 113 n n CHA C1A HEC doub 114 n n CHA C4D HEC sing 115 n n CHA HHA HEC sing 116 n n CHB C4A HEC doub 117 n n CHB C1B HEC sing 118 n n CHB HHB HEC sing 119 n n CHC C4B HEC doub 120 n n CHC C1C HEC sing 121 n n CHC HHC HEC sing 122 n n CHD C4C HEC doub 123 n n CHD C1D HEC sing 124 n n CHD HHD HEC sing 125 n n NA C1A HEC sing 126 n y NA C4A HEC sing 127 n y C1A C2A HEC sing 128 n y C2A C3A HEC doub 129 n y C2A CAA HEC sing 130 n n C3A C4A HEC sing 131 n y C3A CMA HEC sing 132 n n CMA HMA1 HEC sing 133 n n CMA HMA2 HEC sing 134 n n CMA HMA3 HEC sing 135 n n CAA CBA HEC sing 136 n n CAA HAA1 HEC sing 137 n n CAA HAA2 HEC sing 138 n n CBA CGA HEC sing 139 n n CBA HBA1 HEC sing 140 n n CBA HBA2 HEC sing 141 n n CGA O1A HEC doub 142 n n CGA O2A HEC sing 143 n n O2A H2A HEC sing 144 n n NB C1B HEC sing 145 n y NB C4B HEC sing 146 n y C1B C2B HEC doub 147 n y C2B C3B HEC sing 148 n y C2B CMB HEC sing 149 n n C3B C4B HEC sing 150 n y C3B CAB HEC doub 151 e n CMB HMB1 HEC sing 152 n n CMB HMB2 HEC sing 153 n n CMB HMB3 HEC sing 154 n n CAB CBB HEC sing 155 n n CAB HAB HEC sing 156 n n CBB HBB1 HEC sing 157 n n CBB HBB2 HEC sing 158 n n CBB HBB3 HEC sing 159 n n NC C1C HEC sing 160 n y NC C4C HEC sing 161 n y C1C C2C HEC doub 162 n y C2C C3C HEC sing 163 n y C2C CMC HEC sing 164 n n C3C C4C HEC sing 165 n y C3C CAC HEC doub 166 e n CMC HMC1 HEC sing 167 n n CMC HMC2 HEC sing 168 n n CMC HMC3 HEC sing 169 n n CAC CBC HEC sing 170 n n CAC HAC HEC sing 171 n n CBC HBC1 HEC sing 172 n n CBC HBC2 HEC sing 173 n n CBC HBC3 HEC sing 174 n n ND C1D HEC sing 175 n y ND C4D HEC sing 176 n y C1D C2D HEC doub 177 n y C2D C3D HEC sing 178 n y C2D CMD HEC sing 179 n n C3D C4D HEC doub 180 n y C3D CAD HEC sing 181 n n CMD HMD1 HEC sing 182 n n CMD HMD2 HEC sing 183 n n CMD HMD3 HEC sing 184 n n CAD CBD HEC sing 185 n n CAD HAD1 HEC sing 186 n n CAD HAD2 HEC sing 187 n n CBD CGD HEC sing 188 n n CBD HBD1 HEC sing 189 n n CBD HBD2 HEC sing 190 n n CGD O1D HEC doub 191 n n CGD O2D HEC sing 192 n n O2D H2D HEC sing 193 n n # _atom_sites.entry_id 1RWJ _atom_sites.fract_transf_matrix[1][1] 0.022831 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022831 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008078 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 90 90 HEC HEM . C 2 HEC A 1 91 91 HEC HEM . D 2 HEC A 1 92 92 HEC HEM . E 3 HOH A 1 101 101 HOH WAT . E 3 HOH A 2 102 102 HOH WAT . E 3 HOH A 3 103 103 HOH WAT . E 3 HOH A 4 104 104 HOH WAT . E 3 HOH A 5 105 105 HOH WAT . E 3 HOH A 6 106 106 HOH WAT . E 3 HOH A 7 107 107 HOH WAT . E 3 HOH A 8 108 108 HOH WAT . E 3 HOH A 9 109 109 HOH WAT . E 3 HOH A 10 110 110 HOH WAT . E 3 HOH A 11 111 111 HOH WAT . E 3 HOH A 12 112 112 HOH WAT . E 3 HOH A 13 113 113 HOH WAT . E 3 HOH A 14 114 114 HOH WAT . E 3 HOH A 15 115 115 HOH WAT . E 3 HOH A 16 116 116 HOH WAT . E 3 HOH A 17 117 117 HOH WAT . E 3 HOH A 18 118 118 HOH WAT . E 3 HOH A 19 119 119 HOH WAT . E 3 HOH A 20 120 120 HOH WAT . E 3 HOH A 21 121 121 HOH WAT . E 3 HOH A 22 122 122 HOH WAT . E 3 HOH A 23 123 123 HOH WAT . E 3 HOH A 24 124 124 HOH WAT . E 3 HOH A 25 125 125 HOH WAT . E 3 HOH A 26 126 126 HOH WAT . E 3 HOH A 27 127 127 HOH WAT . E 3 HOH A 28 128 128 HOH WAT . E 3 HOH A 29 129 129 HOH WAT . E 3 HOH A 30 130 130 HOH WAT . E 3 HOH A 31 131 131 HOH WAT . E 3 HOH A 32 132 132 HOH WAT . E 3 HOH A 33 133 133 HOH WAT . E 3 HOH A 34 134 134 HOH WAT . E 3 HOH A 35 135 135 HOH WAT . E 3 HOH A 36 136 136 HOH WAT . E 3 HOH A 37 137 137 HOH WAT . E 3 HOH A 38 138 138 HOH WAT . E 3 HOH A 39 139 139 HOH WAT . E 3 HOH A 40 140 140 HOH WAT . E 3 HOH A 41 141 141 HOH WAT . E 3 HOH A 42 142 142 HOH WAT . E 3 HOH A 43 143 143 HOH WAT . E 3 HOH A 44 144 144 HOH WAT . E 3 HOH A 45 145 145 HOH WAT . E 3 HOH A 46 146 146 HOH WAT . E 3 HOH A 47 147 147 HOH WAT . E 3 HOH A 48 148 148 HOH WAT . E 3 HOH A 49 149 149 HOH WAT . E 3 HOH A 50 150 150 HOH WAT . E 3 HOH A 51 151 151 HOH WAT . E 3 HOH A 52 152 152 HOH WAT . E 3 HOH A 53 153 153 HOH WAT . E 3 HOH A 54 154 154 HOH WAT . E 3 HOH A 55 155 155 HOH WAT . E 3 HOH A 56 156 156 HOH WAT . E 3 HOH A 57 157 157 HOH WAT . E 3 HOH A 58 158 158 HOH WAT . E 3 HOH A 59 159 159 HOH WAT . E 3 HOH A 60 160 160 HOH WAT . E 3 HOH A 61 161 161 HOH WAT . E 3 HOH A 62 162 162 HOH WAT . E 3 HOH A 63 163 163 HOH WAT . E 3 HOH A 64 164 164 HOH WAT . E 3 HOH A 65 165 165 HOH WAT . E 3 HOH A 66 166 166 HOH WAT . E 3 HOH A 67 167 167 HOH WAT . E 3 HOH A 68 168 168 HOH WAT . E 3 HOH A 69 169 169 HOH WAT . E 3 HOH A 70 170 170 HOH WAT . E 3 HOH A 71 171 171 HOH WAT . E 3 HOH A 72 172 172 HOH WAT . E 3 HOH A 73 173 173 HOH WAT . E 3 HOH A 74 174 174 HOH WAT . E 3 HOH A 75 175 175 HOH WAT . E 3 HOH A 76 176 176 HOH WAT . E 3 HOH A 77 177 177 HOH WAT . E 3 HOH A 78 178 178 HOH WAT . E 3 HOH A 79 179 179 HOH WAT . E 3 HOH A 80 180 180 HOH WAT . E 3 HOH A 81 181 181 HOH WAT . E 3 HOH A 82 182 182 HOH WAT . E 3 HOH A 83 183 183 HOH WAT . E 3 HOH A 84 184 184 HOH WAT . E 3 HOH A 85 185 185 HOH WAT . E 3 HOH A 86 186 186 HOH WAT . E 3 HOH A 87 187 187 HOH WAT . E 3 HOH A 88 188 188 HOH WAT . E 3 HOH A 89 189 189 HOH WAT . E 3 HOH A 90 190 190 HOH WAT . E 3 HOH A 91 191 191 HOH WAT . E 3 HOH A 92 192 192 HOH WAT . E 3 HOH A 93 193 193 HOH WAT . E 3 HOH A 94 194 194 HOH WAT . E 3 HOH A 95 195 195 HOH WAT . E 3 HOH A 96 196 196 HOH WAT . E 3 HOH A 97 197 197 HOH WAT . E 3 HOH A 98 198 198 HOH WAT . E 3 HOH A 99 199 199 HOH WAT . E 3 HOH A 100 200 200 HOH WAT . E 3 HOH A 101 201 201 HOH WAT . E 3 HOH A 102 202 202 HOH WAT . E 3 HOH A 103 203 203 HOH WAT . E 3 HOH A 104 204 204 HOH WAT . E 3 HOH A 105 205 205 HOH WAT . E 3 HOH A 106 206 206 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . D 2 19.579 3.123 2.869 1 18.82 ? FE HEC 92 A 1 HETATM 2 C CHA HEC . . . D 2 20.165 -0.118 3.715 1 17.61 ? CHA HEC 92 A 1 HETATM 3 C CHB HEC . . . D 2 20.654 2.512 -0.312 1 18 ? CHB HEC 92 A 1 HETATM 4 C CHC HEC . . . D 2 18.476 6.238 1.942 1 17.54 ? CHC HEC 92 A 1 HETATM 5 C CHD HEC . . . D 2 19.117 3.922 6.171 1 18.29 ? CHD HEC 92 A 1 HETATM 6 N NA HEC . . . D 2 20.224 1.537 1.906 1 18.09 ? NA HEC 92 A 1 HETATM 7 C C1A HEC . . . D 2 20.286 0.236 2.376 1 19.39 ? C1A HEC 92 A 1 HETATM 8 C C2A HEC . . . D 2 20.728 -0.673 1.332 1 19.03 ? C2A HEC 92 A 1 HETATM 9 C C3A HEC . . . D 2 21.021 0.09 0.254 1 19.04 ? C3A HEC 92 A 1 HETATM 10 C C4A HEC . . . D 2 20.691 1.454 0.595 1 18.18 ? C4A HEC 92 A 1 HETATM 11 C CMA HEC . . . D 2 21.579 -0.426 -1.073 1 19.03 ? CMA HEC 92 A 1 HETATM 12 C CAA HEC . . . D 2 20.701 -2.202 1.394 1 19.81 ? CAA HEC 92 A 1 HETATM 13 C CBA HEC . . . D 2 19.283 -2.768 1.348 1 21.07 ? CBA HEC 92 A 1 HETATM 14 C CGA HEC . . . D 2 18.544 -2.374 0.082 1 21.52 ? CGA HEC 92 A 1 HETATM 15 O O1A HEC . . . D 2 19.001 -2.753 -1.015 1 22.74 ? O1A HEC 92 A 1 HETATM 16 O O2A HEC . . . D 2 17.511 -1.68 0.18 1 21.27 ? O2A HEC 92 A 1 HETATM 17 N NB HEC . . . D 2 19.509 4.12 1.182 1 18.2 ? NB HEC 92 A 1 HETATM 18 C C1B HEC . . . D 2 20.092 3.765 -0.026 1 19.54 ? C1B HEC 92 A 1 HETATM 19 C C2B HEC . . . D 2 19.928 4.821 -1.002 1 19.65 ? C2B HEC 92 A 1 HETATM 20 C C3B HEC . . . D 2 19.202 5.808 -0.411 1 20.32 ? C3B HEC 92 A 1 HETATM 21 C C4B HEC . . . D 2 18.972 5.386 0.96 1 19.72 ? C4B HEC 92 A 1 HETATM 22 C CMB HEC . . . D 2 20.528 4.838 -2.405 1 19.15 ? CMB HEC 92 A 1 HETATM 23 C CAB HEC . . . D 2 18.619 7.068 -1.047 1 22.12 ? CAB HEC 92 A 1 HETATM 24 C CBB HEC . . . D 2 17.633 6.815 -2.178 1 21.44 ? CBB HEC 92 A 1 HETATM 25 N NC HEC . . . D 2 18.89 4.707 3.831 1 17.98 ? NC HEC 92 A 1 HETATM 26 C C1C HEC . . . D 2 18.444 5.923 3.3 1 18.76 ? C1C HEC 92 A 1 HETATM 27 C C2C HEC . . . D 2 17.982 6.82 4.334 1 19.24 ? C2C HEC 92 A 1 HETATM 28 C C3C HEC . . . D 2 18.178 6.177 5.523 1 18.15 ? C3C HEC 92 A 1 HETATM 29 C C4C HEC . . . D 2 18.733 4.866 5.207 1 18.25 ? C4C HEC 92 A 1 HETATM 30 C CMC HEC . . . D 2 17.455 8.237 4.132 1 18.97 ? CMC HEC 92 A 1 HETATM 31 C CAC HEC . . . D 2 18.019 6.758 6.935 1 18.23 ? CAC HEC 92 A 1 HETATM 32 C CBC HEC . . . D 2 16.624 7.241 7.317 1 16.6 ? CBC HEC 92 A 1 HETATM 33 N ND HEC . . . D 2 19.743 2.149 4.565 1 16.55 ? ND HEC 92 A 1 HETATM 34 C C1D HEC . . . D 2 19.608 2.655 5.852 1 18.03 ? C1D HEC 92 A 1 HETATM 35 C C2D HEC . . . D 2 19.871 1.612 6.826 1 17.65 ? C2D HEC 92 A 1 HETATM 36 C C3D HEC . . . D 2 20.083 0.469 6.14 1 18.06 ? C3D HEC 92 A 1 HETATM 37 C C4D HEC . . . D 2 19.997 0.801 4.736 1 17.29 ? C4D HEC 92 A 1 HETATM 38 C CMD HEC . . . D 2 19.949 1.779 8.332 1 16.73 ? CMD HEC 92 A 1 HETATM 39 C CAD HEC . . . D 2 20.34 -0.922 6.708 1 19.25 ? CAD HEC 92 A 1 HETATM 40 C CBD HEC . . . D 2 19.152 -1.574 7.394 1 20.87 ? CBD HEC 92 A 1 HETATM 41 C CGD HEC . . . D 2 19.466 -2.971 7.9 1 21.43 ? CGD HEC 92 A 1 HETATM 42 O O1D HEC . . . D 2 18.701 -3.479 8.749 1 19.92 ? O1D HEC 92 A 1 HETATM 43 O O2D HEC . . . D 2 20.471 -3.563 7.444 1 19.86 ? O2D HEC 92 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #